Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001088

Physical Location & Seq

Genomic Coordinates Reverse (-)

44788580 .. 44792126

Gene Structure 3547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1368200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGAGTTGCTATTGCTCTATAAGTTGTTATAAGGCTGCCTGGGACAAGCACAAGGTGCACCATCATTTTGCAGCTCCCAATCCTGATCCACAAGCAGTGAAAATTATCAAGAGTTTTGGGCCTTATGGCTCTTATCCTGATTTACCTGACTATCAGGATGATGGTTCGCAGCCTGATGAGATGGTGGAACAAGATGGGAAAACATGGATTGAGGTGGGTTCTTCCGAATATTATGTACCCACAGAGAATGATATTGGATTTTGTCTGAGGCTAAAATTGGAAGTTGTTGATTCTTCAACGCATACACAATTGTTCCCAGCAAGAATCAAAGTGACGGATCCTGTGATTTATCCTCCTCCTCATCCACCGCGTTGTACAATGTGGAACTCTTGCAACGCTGACCTCAAAGAACACTCTTCTAATGATGTAACCTTTAGGGTACTGTCCTATAATATCCTTGCTAATTATCTTGCTACTAGTGGTAGTAACTGGCACTTTTACTGCCCAGATTGGGCTCTTTCATGGGAATATCGTCAGCAAAATTTACTTTATGAGATCATTGAATATGACGCAGATATCCTATGTCTTCAAGAGGTACAGAAAGATCATTTTGAGAATTTCCTCAAACCTGAGTTGGCAAAATATGGATACTCGGTTATATACAAGAAGAAAAAGTTCGAGCTTGAGTTTAATAATTCAGCAAAGCCCCTTGTAGATTCATTGGCTGATAAACAGAAAAGTGAAGCTCGCCGTCTGCTGAAGGACAACGTTGCACTTGTTGTTATATTAGAAATGGTGGAAAATGAGGGCTCCTTGGATGGCAATCGACCTAGAATTTGTGTGGTTGTAACCCTCATCCATGCACTTGAGAAAATTGTCAAGTTGAAGATTCCCCTGCTGATTTGTGCAGATTTGAACTCTGTGCCTCAGAGTGATCCTTATACGTTCATAAGCAAGGGCAGAGTTGAGATTCTTCCAAGCAAAGAAACTGATCAATCGGGCATATTGCAGACACTCAAGCTTTCTCATTCATTGAATCTGAATTTGGAATCTGGAGAGCTTATGGTTTTTGTGTTAAGTGCATATGCAACTTTTTTTCAGTCCGATGGGGTCAAGGATCACCAACGTGAGAAGATGAATCATGGAACCAAGGAGCCTTTGTTCACCAACTTTACACCATCCTTCTTTGGAACTATAGATTATATATTCTACACATGTACCATTATTCATGACTTTTATAGTGTATCAGATTTTTCTGATAAAGTTCGGCCTAATATATGTTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos zf-C6H2

Protein Analysis

430

Amino Acids

49.13

Weight (kDa)

5.47

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	148 - 405	1.9e-14	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58560 AT3G58580
fragaria_vesca	FvH4_5g37360 FvH4_5g37360 FvH4_5g37650 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630
malus_domestica	MD08G1182500.v1.1 MD12G1053300.v1.1 MD14G1051700.v1.1 MD15G1368200.v1.1 MD15G1368500.v1.1
prunus_persica	Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.7G084300_v2.0.a1
pyrus_communis	pycom08g15630 pycom15g33010 pycom15g33030
rosa_chinensis	RchiOBHm_Chr3g0478881 RchiOBHm_Chr7g0227401 RchiOBHm_Chr7g0239031
rosa_laevigata	RLG00000000789 RLG00000001657 RLG00000023618
rosa_multiflora	Rmu_sc0000868.1_g000004 Rmu_sc0004831.1_g000003 Rmu_sc0005651.1_g000003 Rmu_sc0005751.1_g000015
rosa_roxburghii	Rroxscaffold_3G00221350 Rroxscaffold_3G00237900 Rroxscaffold_3G00237980 Rroxscaffold_3G00238050 Rroxscaffold_5G00332920 Rroxscaffold_6G00403000 Rroxscaffold_6G00413120 Rroxscaffold_7G00214960
rosa_rugosa	Rorug03G0168800 Rorug03G0168900 Rorug07G0324800
rosa_samantha	Rh2DG401300 Rh3AG220500 Rh3BG252400 Rh3CG249200 Rh3DG245400 Rh6AG177800 Rh7AG393200 Rh7AG479600 Rh7BG452100 Rh7CG412400 Rh7CG497100 Rh7DG464600
rosa_wichuraiana	Rw2G030830 Rw3G019830 Rw6G015170 Rw7G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	30
AccII	CGCG	1 cut(s)	370
AciI	CCGC	1 cut(s)	368
AclI	AACGTT	1 cut(s)	768
AclWI	GGATC	5 cut(s)	80, 332, 345, 929, 1125
AcsI	RAATTY	4 cut(s)	541, 616, 834, 1042
AcuI	CTGAAG	1 cut(s)	779
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	5 cut(s)	237, 376, 441, 597, 1219
AfiI	CCNNNNNNNGG	1 cut(s)	511
AflIII	ACRYGT	1 cut(s)	1214
AgsI	TTSAA	6 cut(s)	297, 563, 590, 886, 916, 1036
AhlI	ACTAGT	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	2 cut(s)	1028, 1060
AleI	CACNNNNGTG	1 cut(s)	1125
AloI	GAACNNNNNNTCC	2 cut(s)	1145, 1177
AluBI	AGCT	5 cut(s)	74, 682, 746, 1021, 1060
AluI	AGCT	5 cut(s)	74, 682, 746, 1021, 1060
Alw21I	GWGCWC	1 cut(s)	60
Alw44I	GTGCAC	1 cut(s)	56
AlwI	GGATC	5 cut(s)	80, 332, 345, 929, 1125
AoxI	GGCC	2 cut(s)	119, 1268
ApaLI	GTGCAC	1 cut(s)	56
ApeKI	GCWGC	3 cut(s)	35, 71, 169
ApoI	RAATTY	4 cut(s)	541, 616, 834, 1042
ArsI	GACNNNNNNTTYG	2 cut(s)	819, 851
Asp700I	GAANNNNTTC	1 cut(s)	674
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	1112, 1156
BaeGI	GKGCMC	1 cut(s)	60
BaeI	ACNNNNGTAYC	2 cut(s)	1201, 1234
BamHI	GGATCC	1 cut(s)	337
BanII	GRGCYC	2 cut(s)	517, 812
BbsI	GAAGAC	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	22, 83, 181
BccI	CCATC	7 cut(s)	69, 155, 175, 188, 812, 1100, 1186
BceAI	ACGGC	1 cut(s)	735
BciT130I	CCWGG	1 cut(s)	40
BciVI	GTATCC	1 cut(s)	641
BclI	TGATCA	1 cut(s)	991
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	2 cut(s)	477, 831
BfmI	CTRYAG	1 cut(s)	1194
BfuI	GTATCC	1 cut(s)	641
BisI	GCNGC	3 cut(s)	36, 72, 170
BlsI	GCNGC	3 cut(s)	37, 73, 171
Bme1390I	CCNGG	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	4 cut(s)	339, 811, 1147, 1155
BmrFI	CCNGG	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	578
BpmI	CTGGAG	1 cut(s)	1074
BpuEI	CTTGAG	3 cut(s)	704, 887, 1001
BsaBI	GATNNNNATC	1 cut(s)	822
BsaJI	CCNNGG	3 cut(s)	39, 813, 1149
BsaXI	ACNNNNNCTCC	2 cut(s)	1145, 1175
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
Bse1I	ACTGG	1 cut(s)	494
Bse8I	GATNNNNATC	1 cut(s)	822
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	3 cut(s)	39, 813, 1149
BseGI	GGATG	5 cut(s)	163, 361, 823, 855, 1178
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMII	CTCAG	3 cut(s)	257, 621, 941
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	2 cut(s)	345, 348
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	22, 83, 181
BseYI	CCCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	927
Bsh1236I	CGCG	1 cut(s)	370
BshFI	GGCC	2 cut(s)	121, 1270
BsiHKAI	GWGCWC	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	121, 1270
Bsp1286I	GDGCHC	3 cut(s)	60, 517, 812
Bsp1407I	TGTACA	1 cut(s)	374
Bsp143I	GATC	7 cut(s)	85, 337, 555, 604, 934, 991, 1117
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	2 cut(s)	121, 1270
BspCNI	CTCAG	3 cut(s)	258, 622, 940
BspFNI	CGCG	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	1228
BspLI	GGNNCC	4 cut(s)	339, 811, 1147, 1155
BspPI	GGATC	5 cut(s)	80, 332, 345, 929, 1125
BsrGI	TGTACA	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	3 cut(s)	39, 813, 1149
BssMI	GATC	7 cut(s)	85, 337, 555, 604, 934, 991, 1117
BssT1I	CCWWGG	2 cut(s)	813, 1149
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstAUI	TGTACA	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	3 cut(s)	266, 630, 927
BstF5I	GGATG	5 cut(s)	163, 361, 823, 855, 1178
BstFNI	CGCG	1 cut(s)	370
BstKTI	GATC	7 cut(s)	88, 340, 558, 607, 937, 994, 1120
BstMBI	GATC	7 cut(s)	85, 337, 555, 604, 934, 991, 1117
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	40
BstNSI	RCATGY	1 cut(s)	1218
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	1194
BstSLI	GKGCMC	1 cut(s)	60
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	3 cut(s)	22, 83, 181
BstV2I	GAAGAC	1 cut(s)	578
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuI	GTATCC	1 cut(s)	641
BsuRI	GGCC	2 cut(s)	121, 1270
BtsCI	GGATG	5 cut(s)	163, 361, 823, 855, 1178
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	748
CciI	TCATGA	1 cut(s)	1228
Cfr13I	GGNCC	1 cut(s)	119
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	5 cut(s)	236, 375, 440, 596, 1218
CviAII	CATG	6 cut(s)	204, 522, 860, 1142, 1215, 1229
CviQI	GTAC	5 cut(s)	236, 375, 440, 596, 1218
DdeI	CTNAG	3 cut(s)	266, 630, 927
DpnI	GATC	7 cut(s)	87, 339, 557, 606, 936, 993, 1119
DpnII	GATC	7 cut(s)	85, 337, 555, 604, 934, 991, 1117
DraIII	CACNNNGTG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
Eco130I	CCWWGG	2 cut(s)	813, 1149
Eco24I	GRGCYC	2 cut(s)	517, 812
Eco32I	GATATC	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	779
EcoRII	CCWGG	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	577
EcoT14I	CCWWGG	2 cut(s)	813, 1149
EcoT38I	GRGCYC	2 cut(s)	517, 812
ErhI	CCWWGG	2 cut(s)	813, 1149
FaeI	CATG	6 cut(s)	207, 525, 863, 1145, 1218, 1232
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	6 cut(s)	203, 521, 859, 1141, 1214, 1228
FauNDI	CATATG	1 cut(s)	1084
FbaI	TGATCA	1 cut(s)	991
Fnu4HI	GCNGC	3 cut(s)	36, 72, 170
FokI	GGATG	5 cut(s)	170, 348, 830, 842, 1165
FriOI	GRGCYC	2 cut(s)	517, 812
Fsp4HI	GCNGC	3 cut(s)	36, 72, 170
FspBI	CTAG	2 cut(s)	477, 831
GluI	GCNGC	3 cut(s)	36, 72, 170
GsaI	CCCAGC	1 cut(s)	320
GsuI	CTGGAG	1 cut(s)	1074
HaeIII	GGCC	2 cut(s)	121, 1270
HgaI	GACGC	1 cut(s)	578
Hin1II	CATG	6 cut(s)	207, 525, 863, 1145, 1218, 1232
HindIII	AAGCTT	1 cut(s)	1019
HinfI	GANTC	8 cut(s)	290, 324, 716, 889, 970, 1036, 1049, 1138
HphI	GGTGA	2 cut(s)	1112, 1156
Hpy166II	GTNNAC	2 cut(s)	58, 1164
Hpy188I	TCNGA	7 cut(s)	226, 267, 930, 1041, 1105, 1249, 1258
Hpy188III	TCNNGA	7 cut(s)	83, 109, 137, 155, 590, 1053, 1229
Hpy8I	GTNNAC	2 cut(s)	58, 1164
HpyAV	CCTTC	2 cut(s)	754, 1192
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4IV	ACGT	3 cut(s)	768, 944, 1126
HpyCH4V	TGCA	9 cut(s)	58, 71, 393, 773, 863, 908, 1009, 1082, 1088
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	3 cut(s)	266, 630, 927
HpySE526I	ACGT	3 cut(s)	768, 944, 1126
Hsp92II	CATG	6 cut(s)	207, 525, 863, 1145, 1218, 1232
Ksp22I	TGATCA	1 cut(s)	991
Kzo9I	GATC	7 cut(s)	85, 337, 555, 604, 934, 991, 1117
LmnI	GCTCC	3 cut(s)	79, 815, 1153
Lsp1109I	GCAGC	3 cut(s)	22, 83, 181
MaeI	CTAG	2 cut(s)	477, 831
MaeII	ACGT	3 cut(s)	768, 944, 1126
MaeIII	GTNAC	4 cut(s)	331, 427, 485, 847
MalI	GATC	7 cut(s)	87, 339, 557, 606, 936, 993, 1119
MboI	GATC	7 cut(s)	85, 337, 555, 604, 934, 991, 1117
MboII	GAAGA	8 cut(s)	213, 285, 408, 578, 679, 898, 965, 1144
MfeI	CAATTG	1 cut(s)	308
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	3 cut(s)	60, 517, 812
MroXI	GAANNNNTTC	1 cut(s)	674
MseI	TTAA	2 cut(s)	690, 1076
MslI	CAYNNNNRTG	1 cut(s)	1125
MspR9I	CCNGG	1 cut(s)	40
MunI	CAATTG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeI	CATATG	1 cut(s)	1084
NdeII	GATC	7 cut(s)	85, 337, 555, 604, 934, 991, 1117
NlaIII	CATG	6 cut(s)	207, 525, 863, 1145, 1218, 1232
NlaIV	GGNNCC	4 cut(s)	339, 811, 1147, 1155
NmuCI	GTSAC	1 cut(s)	331
NspI	RCATGY	1 cut(s)	1218
OliI	CACNNNNGTG	1 cut(s)	1125
PagI	TCATGA	1 cut(s)	1228
PciI	ACATGT	1 cut(s)	1214
PdmI	GAANNNNTTC	1 cut(s)	674
PfeI	GAWTC	8 cut(s)	290, 324, 716, 889, 970, 1036, 1049, 1138
PkrI	GCNGC	3 cut(s)	37, 73, 171
PscI	ACATGT	1 cut(s)	1214
PsiI	TTATAA	1 cut(s)	30
Psp1406I	AACGTT	1 cut(s)	768
Psp6I	CCWGG	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	4 cut(s)	339, 811, 1147, 1155
PspPI	GGNCC	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	5 cut(s)	237, 376, 441, 597, 1219
RsaNI	GTAC	5 cut(s)	236, 375, 440, 596, 1218
RseI	CAYNNNNRTG	1 cut(s)	1125
SaqAI	TTAA	2 cut(s)	690, 1076
SatI	GCNGC	3 cut(s)	36, 72, 170
Sau3AI	GATC	7 cut(s)	85, 337, 555, 604, 934, 991, 1117
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	3 cut(s)	60, 517, 812
SfcI	CTRYAG	1 cut(s)	1194
SmiMI	CAYNNNNRTG	1 cut(s)	1125
SmlI	CTYRAG	3 cut(s)	683, 866, 1016
SmoI	CTYRAG	3 cut(s)	683, 866, 1016
SpeI	ACTAGT	1 cut(s)	476
SsiI	CCGC	1 cut(s)	368
SspI	AATATT	1 cut(s)	230
SspMI	CTAG	2 cut(s)	477, 831
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	2 cut(s)	813, 1149
TaaI	ACNGT	1 cut(s)	444
TaiI	ACGT	3 cut(s)	771, 947, 1129
TaqI	TCGA	2 cut(s)	678, 826
TatI	WGTACW	1 cut(s)	374
TfiI	GAWTC	8 cut(s)	290, 324, 716, 889, 970, 1036, 1049, 1138
Tru1I	TTAA	2 cut(s)	690, 1076
Tru9I	TTAA	2 cut(s)	690, 1076
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	35, 71, 169
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	6 cut(s)	510, 708, 937, 1020, 1151, 1217
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	102
VneI	GTGCAC	1 cut(s)	56
XapI	RAATTY	4 cut(s)	541, 616, 834, 1042
XceI	RCATGY	1 cut(s)	1218
XmnI	GAANNNNTTC	1 cut(s)	674
XspI	CTAG	2 cut(s)	477, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.