Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001088

Physical Location & Seq

Genomic Coordinates Reverse (-)

52953316 .. 52958558

Gene Structure 5243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG412400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAAGTCCCCCCCCCCCCCCGAGCACGAGTTCAGTTTCAAATGGTATCGGGAGTATATTAGCCCTTCTATCCCCAGAGACATGATCAAGTGCTCTGTCCACCCTGATGAGGTGGCCACTTTCCGGTGTAATGATTGTGTCAAATTGAAGTTACCATTCAAGGGAAGTTATCATTGCTCTCCCACTTGTTATTCTGAGGCATGGGAGAAACACAGGATGTGCCATCGTTGTGCTAAAGCTGTTGGTGAGACTTCTTCTGATAATCAACAAGCAGAAGAAGAGATGTATAGCTGGCTTGACTTTGAAGATGATCCACTCAATGAAATTCCAAAGCTGGAACGAGATGGAAAACAATGGGTTGAGGTGTGCTCTTCAAGGTGTTATGTACCCACAGTGAATGACCTTAACTGCAGGTTGATGCTGGAATCTAAGGCTGTTGATTGTTCAACTGTTCTGGATTTGTGCCTGAGTGACATCATCATGACGGTTCCTGTTCTTTATCCGCCTCATCAGAAACCTCGCTCCATGCTTGAGTGTCGGTGGAAGCTTGGGGACTCTGATCTCAAAGCGCACACTTCCAGTGGTGTAAAATTTAATGTGCTATCATATAATGTCCTTGGTAATCTTTATACTGATCCGTTTAGGTACTCTTACTGCCCAGAATGGGCTAGGTCTGGGGAATATCGTCAGCAGAATTTACTAAACGAGATCATTGAATACGATGCAGACATTCTCTGTCTTCAAGAGGTACAAAGTAATCATCTTGAGTATTTCTTCGAACCTGAGTTGGCAAAATGCGGATATTCTGTTATATACAAGAAGAGAAGAGGATCATGTGCGTTTGATAGCTCTATTATGAGAGTGATAGAAGCATTGCAGCCATTGGAACCTCAACAGAGAGATAGAGCTTGTATAAGGCTGAAGAAGGTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos zf-C6H2

Protein Analysis

311

Amino Acids

36.23

Weight (kDa)

5.9

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	201 - 267	3.5e-07	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58560 AT3G58580
fragaria_vesca	FvH4_5g37360 FvH4_5g37360 FvH4_5g37650 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630
malus_domestica	MD08G1182500.v1.1 MD12G1053300.v1.1 MD14G1051700.v1.1 MD15G1368200.v1.1 MD15G1368500.v1.1
prunus_persica	Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.7G084300_v2.0.a1
pyrus_communis	pycom08g15630 pycom15g33010 pycom15g33030
rosa_chinensis	RchiOBHm_Chr3g0478881 RchiOBHm_Chr7g0227401 RchiOBHm_Chr7g0239031
rosa_laevigata	RLG00000000789 RLG00000001657 RLG00000023618
rosa_multiflora	Rmu_sc0000868.1_g000004 Rmu_sc0004831.1_g000003 Rmu_sc0005651.1_g000003 Rmu_sc0005751.1_g000015
rosa_roxburghii	Rroxscaffold_3G00221350 Rroxscaffold_3G00237900 Rroxscaffold_3G00237980 Rroxscaffold_3G00238050 Rroxscaffold_5G00332920 Rroxscaffold_6G00403000 Rroxscaffold_6G00413120 Rroxscaffold_7G00214960
rosa_rugosa	Rorug03G0168800 Rorug03G0168900 Rorug07G0324800
rosa_samantha	Rh2DG401300 Rh3AG220500 Rh3BG252400 Rh3CG249200 Rh3DG245400 Rh6AG177800 Rh7AG393200 Rh7AG479600 Rh7BG452100 Rh7CG412400 Rh7CG497100 Rh7DG464600
rosa_wichuraiana	Rw2G030830 Rw3G019830 Rw6G015170 Rw7G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	402
AciI	CCGC	2 cut(s)	503, 798
AclWI	GGATC	3 cut(s)	305, 629, 838
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	3 cut(s)	324, 590, 694
AfaI	GTAC	3 cut(s)	387, 647, 750
AfiI	CCNNNNNNNGG	4 cut(s)	109, 123, 161, 664
AgsI	TTSAA	8 cut(s)	40, 148, 160, 305, 375, 447, 716, 743
AluBI	AGCT	6 cut(s)	239, 291, 334, 547, 849, 908
AluI	AGCT	6 cut(s)	239, 291, 334, 547, 849, 908
Alw21I	GWGCWC	3 cut(s)	27, 95, 371
Alw26I	GTCTC	2 cut(s)	72, 242
AlwI	GGATC	3 cut(s)	305, 629, 838
Ama87I	CYCGRG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	877
ApoI	RAATTY	3 cut(s)	324, 590, 694
AspLEI	GCGC	1 cut(s)	571
AsuHPI	GGTGA	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	777
AvaI	CYCGRG	1 cut(s)	20
BalI	TGGCCA	1 cut(s)	116
BauI	CACGAG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	731
Bbv12I	GWGCWC	3 cut(s)	27, 95, 371
BbvI	GCAGC	1 cut(s)	889
BccI	CCATC	2 cut(s)	231, 338
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	72, 242
BfaI	CTAG	1 cut(s)	669
BfmI	CTRYAG	1 cut(s)	409
BfuAI	ACCTGC	1 cut(s)	402
BisI	GCNGC	1 cut(s)	878
BlsI	GCNGC	1 cut(s)	879
BmeT110I	CYCGRG	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	489, 888
BmsI	GCATC	2 cut(s)	408, 712
BpiI	GAAGAC	1 cut(s)	731
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
Bpu14I	TTCGAA	1 cut(s)	777
BpuEI	CTTGAG	2 cut(s)	551, 785
BsaJI	CCNNGG	1 cut(s)	616
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 123, 161, 664
Bse1I	ACTGG	1 cut(s)	579
Bse3DI	GCAATG	2 cut(s)	172, 872
BseDI	CCNNGG	1 cut(s)	616
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	4 cut(s)	109, 123, 161, 664
BseMI	GCAATG	2 cut(s)	172, 872
BseMII	CTCAG	3 cut(s)	186, 458, 774
BseNI	ACTGG	1 cut(s)	579
BseXI	GCAGC	1 cut(s)	889
BshFI	GGCC	1 cut(s)	116
BsiHKAI	GWGCWC	3 cut(s)	27, 95, 371
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	4 cut(s)	109, 123, 161, 664
BsmAI	GTCTC	2 cut(s)	72, 242
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	20
Bsp119I	TTCGAA	1 cut(s)	777
Bsp1286I	GDGCHC	3 cut(s)	27, 95, 371
Bsp143I	GATC	6 cut(s)	84, 310, 559, 634, 708, 830
BspACI	CCGC	2 cut(s)	503, 798
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	3 cut(s)	187, 459, 775
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	2 cut(s)	489, 888
BspMAI	CTGCAG	1 cut(s)	413
BspMI	ACCTGC	1 cut(s)	402
BspPI	GGATC	3 cut(s)	305, 629, 838
BspQI	GCTCTTC	1 cut(s)	376
BspT104I	TTCGAA	1 cut(s)	777
BsrDI	GCAATG	2 cut(s)	172, 872
BsrI	ACTGG	1 cut(s)	579
BssECI	CCNNGG	1 cut(s)	616
BssMI	GATC	6 cut(s)	84, 310, 559, 634, 708, 830
BssSI	CACGAG	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	616
Bst2BI	CACGAG	1 cut(s)	26
Bst4CI	ACNGT	3 cut(s)	394, 451, 487
Bst6I	CTCTTC	4 cut(s)	273, 376, 815, 820
BstBI	TTCGAA	1 cut(s)	777
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	4 cut(s)	195, 429, 467, 783
BstF5I	GGATG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	6 cut(s)	87, 313, 562, 637, 711, 833
BstMAI	GTCTC	2 cut(s)	72, 242
BstMBI	GATC	6 cut(s)	84, 310, 559, 634, 708, 830
BstSFI	CTRYAG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	889
BstV2I	GAAGAC	1 cut(s)	731
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	399, 586
BveI	ACCTGC	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	293
CciI	TCATGA	1 cut(s)	480
CfoI	GCGC	1 cut(s)	571
Csp6I	GTAC	3 cut(s)	386, 646, 749
CviAII	CATG	5 cut(s)	82, 201, 481, 526, 834
CviQI	GTAC	3 cut(s)	386, 646, 749
DdeI	CTNAG	4 cut(s)	195, 429, 467, 783
DpnI	GATC	6 cut(s)	86, 312, 561, 636, 710, 832
DpnII	GATC	6 cut(s)	84, 310, 559, 634, 708, 830
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	4 cut(s)	273, 376, 815, 820
EarI	CTCTTC	4 cut(s)	273, 376, 815, 820
EciI	GGCGGA	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	616
Eco88I	CYCGRG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	5 cut(s)	85, 204, 484, 529, 837
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	5 cut(s)	81, 200, 480, 525, 833
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	878
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	878
FspBI	CTAG	1 cut(s)	669
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	1 cut(s)	878
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	124
HhaI	GCGC	1 cut(s)	571
Hin1II	CATG	5 cut(s)	85, 204, 484, 529, 837
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	2 cut(s)	425, 554
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	4 cut(s)	196, 259, 513, 559
Hpy188III	TCNNGA	5 cut(s)	50, 455, 481, 743, 764
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	75, 919
HpyCH4III	ACNGT	3 cut(s)	394, 451, 487
HpyCH4V	TGCA	4 cut(s)	411, 725, 877, 931
HpyF3I	CTNAG	4 cut(s)	195, 429, 467, 783
Hsp92II	CATG	5 cut(s)	85, 204, 484, 529, 837
HspAI	GCGC	1 cut(s)	569
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	6 cut(s)	84, 310, 559, 634, 708, 830
LguI	GCTCTTC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	527
Lsp1109I	GCAGC	1 cut(s)	889
LweI	GCATC	2 cut(s)	408, 712
MaeI	CTAG	1 cut(s)	669
MaeIII	GTNAC	2 cut(s)	150, 470
MalI	GATC	6 cut(s)	86, 312, 561, 636, 710, 832
MboI	GATC	6 cut(s)	84, 310, 559, 634, 708, 830
MhlI	GDGCHC	3 cut(s)	27, 95, 371
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	4 cut(s)	143, 324, 590, 694
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	548
MnlI	CCTC	8 cut(s)	103, 190, 355, 516, 528, 739, 821, 900
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	2 cut(s)	405, 594
MslI	CAYNNNNRTG	3 cut(s)	105, 228, 479
Msp20I	TGGCCA	1 cut(s)	116
MspI	CCGG	1 cut(s)	124
NdeII	GATC	6 cut(s)	84, 310, 559, 634, 708, 830
NlaIII	CATG	5 cut(s)	85, 204, 484, 529, 837
NlaIV	GGNNCC	2 cut(s)	489, 888
NmuCI	GTSAC	1 cut(s)	470
NspV	TTCGAA	1 cut(s)	777
PagI	TCATGA	1 cut(s)	480
PciSI	GCTCTTC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	1 cut(s)	879
PleI	GAGTC	1 cut(s)	548
PpsI	GAGTC	1 cut(s)	548
PspN4I	GGNNCC	2 cut(s)	489, 888
PstI	CTGCAG	1 cut(s)	413
RsaI	GTAC	3 cut(s)	387, 647, 750
RsaNI	GTAC	3 cut(s)	386, 646, 749
RseI	CAYNNNNRTG	3 cut(s)	105, 228, 479
SapI	GCTCTTC	1 cut(s)	376
SaqAI	TTAA	2 cut(s)	405, 594
SatI	GCNGC	1 cut(s)	878
Sau3AI	GATC	6 cut(s)	84, 310, 559, 634, 708, 830
SchI	GAGTC	1 cut(s)	548
SduI	GDGCHC	3 cut(s)	27, 95, 371
SfaNI	GCATC	2 cut(s)	408, 712
SfcI	CTRYAG	1 cut(s)	409
SfuI	TTCGAA	1 cut(s)	777
SmiMI	CAYNNNNRTG	3 cut(s)	105, 228, 479
SmlI	CTYRAG	2 cut(s)	530, 764
SmoI	CTYRAG	2 cut(s)	530, 764
Sse9I	AATT	4 cut(s)	143, 324, 590, 694
SsiI	CCGC	2 cut(s)	503, 798
SspMI	CTAG	1 cut(s)	669
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	3 cut(s)	394, 451, 487
TaqI	TCGA	1 cut(s)	777
TasI	AATT	4 cut(s)	143, 324, 590, 694
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	2 cut(s)	405, 594
Tru9I	TTAA	2 cut(s)	405, 594
TscAI	CASTG	2 cut(s)	399, 586
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	1 cut(s)	877
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	2 cut(s)	17, 336
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	2 cut(s)	399, 586
XapI	RAATTY	3 cut(s)	324, 590, 694
XspI	CTAG	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.