Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001088

Physical Location & Seq

Genomic Coordinates Reverse (-)

58471461 .. 58473092

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG401300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGATGGTTGTGCTACATTTTACCGCCGAGATGTATTCAAAGAAATCGTAAAATATGAGTGTGCGTTTGATAGCTCTATTATGAGAGTGATAGAAGCATTGCAGCCATTGGAACCTCAACAGAGAGATAGAGCTTGTATAAGGCTGAAGAAGGACAATGTTGCACTTGTTGTTATATTAGAAAAACTGGAAAGTGAGGGCACCTGCAATGGAATTCAACCTAGAATTTGTGTGGCAAATACACACATATCTGCAAATCCAAAGTTCCCAGATGTAAAATTGTTCCAAGTTGTGGACCTGATGATTACTGGACTGAACAAAATTGCCGAGATGAAAATTCCTCTGTTGGTTTGTGGAGATTTTAACTCTCTTCCTCTGAGTGAGCCTCATAAGTTCATAACTGCTGGCAGAGTCGACAATCTTCCCAACGATACTGATCCATTCGGCATATGTCAGCATCTAAAGCTTCACCATTCACTTTCACTGAAAATGGGAAGAGATGTTGGGAGTGGAATGGCTTTAGGATCAAGTGTATTATTTGCTCCAGTTGCTGCTATTCTAGGGACCAGTCCATCTCTTCTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos zf-C6H2

Protein Analysis

195

Amino Acids

21.43

Weight (kDa)

6.94

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58560 AT3G58580
fragaria_vesca	FvH4_5g37360 FvH4_5g37360 FvH4_5g37650 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630
malus_domestica	MD08G1182500.v1.1 MD12G1053300.v1.1 MD14G1051700.v1.1 MD15G1368200.v1.1 MD15G1368500.v1.1
prunus_persica	Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.7G084300_v2.0.a1
pyrus_communis	pycom08g15630 pycom15g33010 pycom15g33030
rosa_chinensis	RchiOBHm_Chr3g0478881 RchiOBHm_Chr7g0227401 RchiOBHm_Chr7g0239031
rosa_laevigata	RLG00000000789 RLG00000001657 RLG00000023618
rosa_multiflora	Rmu_sc0000868.1_g000004 Rmu_sc0004831.1_g000003 Rmu_sc0005651.1_g000003 Rmu_sc0005751.1_g000015
rosa_roxburghii	Rroxscaffold_3G00221350 Rroxscaffold_3G00237900 Rroxscaffold_3G00237980 Rroxscaffold_3G00238050 Rroxscaffold_5G00332920 Rroxscaffold_6G00403000 Rroxscaffold_6G00413120 Rroxscaffold_7G00214960
rosa_rugosa	Rorug03G0168800 Rorug03G0168900 Rorug07G0324800
rosa_samantha	Rh2DG401300 Rh3AG220500 Rh3BG252400 Rh3CG249200 Rh3DG245400 Rh6AG177800 Rh7AG393200 Rh7AG479600 Rh7BG452100 Rh7CG412400 Rh7CG497100 Rh7DG464600
rosa_wichuraiana	Rw2G030830 Rw3G019830 Rw6G015170 Rw7G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	212
Acc36I	ACCTGC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	200
AccB7I	CCANNNNNTGG	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	414
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	431, 532
AcsI	RAATTY	3 cut(s)	213, 225, 336
AcuI	CTGAAG	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	40, 218
AluBI	AGCT	3 cut(s)	75, 134, 466
AluI	AGCT	3 cut(s)	75, 134, 466
AlwI	GGATC	2 cut(s)	431, 532
AlwNI	CAGNNNCTG	1 cut(s)	551
ApeKI	GCWGC	2 cut(s)	103, 551
ApoI	RAATTY	3 cut(s)	213, 225, 336
AspS9I	GGNCC	2 cut(s)	295, 564
AsuHPI	GGTGA	1 cut(s)	461
AvaII	GGWCC	2 cut(s)	295, 564
BaeGI	GKGCMC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	115, 538
BccI	CCATC	1 cut(s)	580
BfaI	CTAG	2 cut(s)	222, 560
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	2 cut(s)	104, 552
BlsI	GCNGC	2 cut(s)	105, 553
Bme18I	GGWCC	2 cut(s)	295, 564
BmgT120I	GGNCC	2 cut(s)	295, 564
BmiI	GGNNCC	3 cut(s)	114, 202, 565
BmsI	GCATC	1 cut(s)	466
BplI	GAGNNNNNCTC	2 cut(s)	370, 402
BpmI	CTGGAG	1 cut(s)	528
BsaBI	GATNNNNATC	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	4 cut(s)	192, 313, 545, 567
Bse3DI	GCAATG	2 cut(s)	98, 214
Bse8I	GATNNNNATC	1 cut(s)	435
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	2 cut(s)	98, 214
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	4 cut(s)	192, 313, 545, 567
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	115, 538
BshNI	GGYRCC	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	577
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	436, 524
BspACI	CCGC	1 cut(s)	25
BspCNI	CTCAG	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	114, 202, 565
BspMI	ACCTGC	1 cut(s)	212
BspPI	GGATC	2 cut(s)	431, 532
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	2 cut(s)	98, 214
BsrI	ACTGG	4 cut(s)	192, 313, 545, 567
BssMI	GATC	2 cut(s)	436, 524
Bst6I	CTCTTC	3 cut(s)	375, 490, 582
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	439, 527
BstMBI	GATC	2 cut(s)	436, 524
BstMWI	GCNNNNNNNGC	2 cut(s)	463, 548
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	115, 538
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	482
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	1 cut(s)	406
CaiI	CAGNNNCTG	1 cut(s)	551
Cfr13I	GGNCC	2 cut(s)	295, 564
CviJI	RGCY	7 cut(s)	75, 106, 134, 145, 385, 466, 518
CviKI_1	RGCY	7 cut(s)	75, 106, 134, 145, 385, 466, 518
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	2 cut(s)	438, 526
DpnII	GATC	2 cut(s)	436, 524
Eam1104I	CTCTTC	3 cut(s)	375, 490, 582
EarI	CTCTTC	3 cut(s)	375, 490, 582
Eco47I	GGWCC	2 cut(s)	295, 564
Eco57I	CTGAAG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	213
FaqI	GGGAC	1 cut(s)	577
FauNDI	CATATG	1 cut(s)	449
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	104, 552
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	104, 552
FspBI	CTAG	2 cut(s)	222, 560
GluI	GCNGC	2 cut(s)	104, 552
GsuI	CTGGAG	1 cut(s)	528
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	411
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	2 cut(s)	295, 415
Hpy188I	TCNGA	1 cut(s)	378
Hpy8I	GTNNAC	2 cut(s)	295, 415
HpyAV	CCTTC	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	103, 164, 207, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	463, 548
HpyF3I	CTNAG	1 cut(s)	377
Kzo9I	GATC	2 cut(s)	436, 524
LmnI	GCTCC	1 cut(s)	547
LpnPI	CCDG	8 cut(s)	173, 217, 282, 294, 311, 390, 558, 580
Lsp1109I	GCAGC	2 cut(s)	115, 538
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	2 cut(s)	222, 560
MalI	GATC	2 cut(s)	438, 526
MboI	GATC	2 cut(s)	436, 524
MboII	GAAGA	5 cut(s)	160, 362, 413, 507, 569
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	5 cut(s)	213, 225, 278, 321, 336
MlyI	GAGTC	1 cut(s)	420
MnlI	CCTC	5 cut(s)	126, 190, 351, 384, 396
MseI	TTAA	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	463, 548
NdeI	CATATG	1 cut(s)	449
NdeII	GATC	2 cut(s)	436, 524
NlaIV	GGNNCC	3 cut(s)	114, 202, 565
NmeAIII	GCCGAG	2 cut(s)	53, 352
PaqCI	CACCTGC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	105, 553
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PspN4I	GGNNCC	3 cut(s)	114, 202, 565
PspPI	GGNCC	2 cut(s)	295, 564
PstNI	CAGNNNCTG	1 cut(s)	551
SalI	GTCGAC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	104, 552
Sau3AI	GATC	2 cut(s)	436, 524
Sau96I	GGNCC	2 cut(s)	295, 564
SchI	GAGTC	1 cut(s)	420
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	7 cut(s)	77, 118, 136, 206, 223, 300, 468
SfaNI	GCATC	1 cut(s)	466
SinI	GGWCC	2 cut(s)	295, 564
Sse9I	AATT	5 cut(s)	213, 225, 278, 321, 336
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	2 cut(s)	222, 560
TaqI	TCGA	1 cut(s)	414
TasI	AATT	5 cut(s)	213, 225, 278, 321, 336
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	489
TseI	GCWGC	2 cut(s)	103, 551
TspDTI	ATGAA	2 cut(s)	347, 385
TspRI	CASTG	1 cut(s)	489
Van91I	CCANNNNNTGG	1 cut(s)	292
VpaK11BI	GGWCC	2 cut(s)	295, 564
XapI	RAATTY	3 cut(s)	213, 225, 336
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	2 cut(s)	222, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.