Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001088

Physical Location & Seq

Genomic Coordinates Reverse (-)

50634188 .. 50636672

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20367

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGATCCTCCTCAAAATCCCAATGTGGGTTCTTCTTCTTCTTCTTCTCCTCGAAGACCTGAGTTGGGTTCCTCTTCTTCTCCAAGGCCTGATGTGGGTTCTTCTTCTTCTTCTCCAAGACCTGAAGTGGGTTCTTCTTCTTCTTCTTCTTCATCTTCTTTGAGCTTACCGAGATTCAGTCTCATCGTGATGATGGGCACTACACATTCAATTACACCAGTCTTCGGCTGCAGAATCGACCCTACAGCTCGTGTGCCCAAGAAGGACGATGAAGTCGCCCCCCCCCCCGAGCACGAGTTCAGTTTCAAATGGTATCGGGAGTATATTAGCCCTTCTATCCCCAGAGACAAGATCAAGTGCTCTGTCCACCCTGATGAGGTGGCCACTTTCCGGTGTAATGATTGTGTCAAATTGAAGTTACCATTCAAGGGAAGTTATCATTGCTCTCCCACTTGTTATTCTGAGGCATGGGAGAAACACAGGATGTGCCATCGTTGTGCTAAAGCTGTTGGTGAGACTTCTTCTGATAATCAACAAGCAGAAGAAGAGATGTATAGCTGGCTTGACTTTGAAGATGATCCACTCAATAAAATTCCAAAGCTGGAACGAGATGGAAAACAATGGGTTGAGGTGTGCTCTTCAAGGTGTTATGTACCCACAGTGAATGACCTTAACTGCAGGTTGATGCTGGAATCTAAGGCTGTCGATTGTTCAACTGGTCTGGATTTGTGCCTGAGTGACATCATCATGACGGTTCCTGTTCTTTATCCGCCTCATCAGAAACCTCGCTCCATGCTTGAGTGTCGGTGGAAGCTTGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos zf-C6H2

Protein Analysis

274

Amino Acids

30.63

Weight (kDa)

6.19

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58560 AT3G58580
fragaria_vesca	FvH4_5g37360 FvH4_5g37360 FvH4_5g37650 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630
malus_domestica	MD08G1182500.v1.1 MD12G1053300.v1.1 MD14G1051700.v1.1 MD15G1368200.v1.1 MD15G1368500.v1.1
prunus_persica	Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.7G084300_v2.0.a1
pyrus_communis	pycom08g15630 pycom15g33010 pycom15g33030
rosa_chinensis	RchiOBHm_Chr3g0478881 RchiOBHm_Chr7g0227401 RchiOBHm_Chr7g0239031
rosa_laevigata	RLG00000000789 RLG00000001657 RLG00000023618
rosa_multiflora	Rmu_sc0000868.1_g000004 Rmu_sc0004831.1_g000003 Rmu_sc0005651.1_g000003 Rmu_sc0005751.1_g000015
rosa_roxburghii	Rroxscaffold_3G00221350 Rroxscaffold_3G00237900 Rroxscaffold_3G00237980 Rroxscaffold_3G00238050 Rroxscaffold_5G00332920 Rroxscaffold_6G00403000 Rroxscaffold_6G00413120 Rroxscaffold_7G00214960
rosa_rugosa	Rorug03G0168800 Rorug03G0168900 Rorug07G0324800
rosa_samantha	Rh2DG401300 Rh3AG220500 Rh3BG252400 Rh3CG249200 Rh3DG245400 Rh6AG177800 Rh7AG393200 Rh7AG479600 Rh7BG452100 Rh7CG412400 Rh7CG497100 Rh7DG464600
rosa_wichuraiana	Rw2G030830 Rw3G019830 Rw6G015170 Rw7G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	669
AciI	CCGC	1 cut(s)	770
AclWI	GGATC	2 cut(s)	12, 572
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	591
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	654
AfiI	CCNNNNNNNGG	8 cut(s)	26, 65, 95, 128, 224, 376, 390, 428
AgsI	TTSAA	7 cut(s)	210, 307, 415, 427, 572, 642, 714
AluBI	AGCT	6 cut(s)	165, 248, 506, 558, 601, 814
AluI	AGCT	6 cut(s)	165, 248, 506, 558, 601, 814
Alw21I	GWGCWC	3 cut(s)	294, 362, 638
Alw26I	GTCTC	3 cut(s)	185, 339, 509
AlwI	GGATC	2 cut(s)	12, 572
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	2 cut(s)	86, 381
ApeKI	GCWGC	1 cut(s)	228
ApoI	RAATTY	1 cut(s)	591
AsuHPI	GGTGA	1 cut(s)	524
AvaI	CYCGRG	1 cut(s)	287
BaeGI	GKGCMC	2 cut(s)	200, 258
BalI	TGGCCA	1 cut(s)	383
BamHI	GGATCC	1 cut(s)	4
BauI	CACGAG	2 cut(s)	249, 293
BbsI	GAAGAC	2 cut(s)	61, 214
Bbv12I	GWGCWC	3 cut(s)	294, 362, 638
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	3 cut(s)	187, 498, 605
BcoDI	GTCTC	3 cut(s)	185, 339, 509
BfmI	CTRYAG	3 cut(s)	229, 243, 676
BfuAI	ACCTGC	1 cut(s)	669
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	287
BmiI	GGNNCC	3 cut(s)	6, 70, 756
BmsI	GCATC	1 cut(s)	675
BpiI	GAAGAC	2 cut(s)	61, 214
BplI	GAGNNNNNCTC	2 cut(s)	620, 652
BpuEI	CTTGAG	1 cut(s)	818
BsaJI	CCNNGG	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	8 cut(s)	26, 65, 95, 128, 224, 376, 390, 428
Bse1I	ACTGG	2 cut(s)	218, 721
Bse3DI	GCAATG	1 cut(s)	439
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	489
BseLI	CCNNNNNNNGG	8 cut(s)	26, 65, 95, 128, 224, 376, 390, 428
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	3 cut(s)	51, 453, 725
BseNI	ACTGG	2 cut(s)	218, 721
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	2 cut(s)	200, 258
BseXI	GCAGC	1 cut(s)	215
BshFI	GGCC	2 cut(s)	88, 383
BsiHKAI	GWGCWC	3 cut(s)	294, 362, 638
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	391
BslI	CCNNNNNNNGG	8 cut(s)	26, 65, 95, 128, 224, 376, 390, 428
BsmAI	GTCTC	3 cut(s)	185, 339, 509
BsnI	GGCC	2 cut(s)	88, 383
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	5 cut(s)	200, 258, 294, 362, 638
Bsp143I	GATC	3 cut(s)	4, 351, 577
BspACI	CCGC	1 cut(s)	770
BspANI	GGCC	2 cut(s)	88, 383
BspCNI	CTCAG	3 cut(s)	52, 454, 726
BspHI	TCATGA	1 cut(s)	747
BspLI	GGNNCC	3 cut(s)	6, 70, 756
BspMAI	CTGCAG	2 cut(s)	233, 680
BspMI	ACCTGC	1 cut(s)	669
BspPI	GGATC	2 cut(s)	12, 572
BspQI	GCTCTTC	1 cut(s)	643
BsrDI	GCAATG	1 cut(s)	439
BsrI	ACTGG	2 cut(s)	218, 721
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	3 cut(s)	4, 351, 577
BssSI	CACGAG	2 cut(s)	249, 293
BssT1I	CCWWGG	1 cut(s)	83
Bst2BI	CACGAG	2 cut(s)	249, 293
Bst4CI	ACNGT	2 cut(s)	661, 754
Bst6I	CTCTTC	3 cut(s)	79, 540, 643
BstC8I	GCNNGC	1 cut(s)	560
BstDEI	CTNAG	4 cut(s)	60, 462, 696, 734
BstF5I	GGATG	1 cut(s)	489
BstKTI	GATC	3 cut(s)	7, 354, 580
BstMAI	GTCTC	3 cut(s)	185, 339, 509
BstMBI	GATC	3 cut(s)	4, 351, 577
BstSFI	CTRYAG	3 cut(s)	229, 243, 676
BstSLI	GKGCMC	2 cut(s)	200, 258
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	2 cut(s)	61, 214
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	88, 383
BtsCI	GGATG	1 cut(s)	489
BtsIMutI	CAGTG	1 cut(s)	666
BveI	ACCTGC	1 cut(s)	669
Cac8I	GCNNGC	1 cut(s)	560
CciI	TCATGA	1 cut(s)	747
Csp6I	GTAC	1 cut(s)	653
CviAII	CATG	3 cut(s)	468, 748, 793
CviQI	GTAC	1 cut(s)	653
DdeI	CTNAG	4 cut(s)	60, 462, 696, 734
DpnI	GATC	3 cut(s)	6, 353, 579
DpnII	GATC	3 cut(s)	4, 351, 577
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	3 cut(s)	79, 540, 643
EarI	CTCTTC	3 cut(s)	79, 540, 643
EciI	GGCGGA	1 cut(s)	759
Eco130I	CCWWGG	1 cut(s)	83
Eco147I	AGGCCT	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	3 cut(s)	471, 751, 796
FaiI	YATR	6 cut(s)	324, 469, 555, 651, 749, 794
FatI	CATG	3 cut(s)	467, 747, 792
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	229
HaeIII	GGCC	2 cut(s)	88, 383
HapII	CCGG	1 cut(s)	391
Hin1II	CATG	3 cut(s)	471, 751, 796
HindIII	AAGCTT	1 cut(s)	812
HinfI	GANTC	3 cut(s)	174, 234, 692
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	3 cut(s)	463, 526, 780
Hpy188III	TCNNGA	4 cut(s)	187, 317, 722, 748
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	2 cut(s)	256, 342
HpyCH4III	ACNGT	2 cut(s)	661, 754
HpyCH4V	TGCA	2 cut(s)	231, 678
HpyF3I	CTNAG	4 cut(s)	60, 462, 696, 734
Hsp92II	CATG	3 cut(s)	471, 751, 796
Kzo9I	GATC	3 cut(s)	4, 351, 577
LguI	GCTCTTC	1 cut(s)	643
LmnI	GCTCC	1 cut(s)	794
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	1 cut(s)	675
MaeIII	GTNAC	2 cut(s)	417, 737
MalI	GATC	3 cut(s)	6, 353, 579
MboI	GATC	3 cut(s)	4, 351, 577
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	5 cut(s)	200, 258, 294, 362, 638
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	3 cut(s)	210, 410, 591
MluNI	TGGCCA	1 cut(s)	383
MnlI	CCTC	9 cut(s)	18, 21, 60, 82, 370, 457, 622, 783, 795
Mox20I	TGGCCA	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	1 cut(s)	672
MslI	CAYNNNNRTG	4 cut(s)	188, 372, 495, 746
Msp20I	TGGCCA	1 cut(s)	383
MspI	CCGG	1 cut(s)	391
NdeII	GATC	3 cut(s)	4, 351, 577
NlaIII	CATG	3 cut(s)	471, 751, 796
NlaIV	GGNNCC	3 cut(s)	6, 70, 756
NmuCI	GTSAC	1 cut(s)	737
PagI	TCATGA	1 cut(s)	747
PceI	AGGCCT	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	643
PfeI	GAWTC	3 cut(s)	174, 234, 692
PkrI	GCNGC	1 cut(s)	230
PspN4I	GGNNCC	3 cut(s)	6, 70, 756
PstI	CTGCAG	2 cut(s)	233, 680
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	654
RsaNI	GTAC	1 cut(s)	653
RseI	CAYNNNNRTG	4 cut(s)	188, 372, 495, 746
SapI	GCTCTTC	1 cut(s)	643
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	3 cut(s)	4, 351, 577
SduI	GDGCHC	5 cut(s)	200, 258, 294, 362, 638
SfaNI	GCATC	1 cut(s)	675
SfcI	CTRYAG	3 cut(s)	229, 243, 676
SmiMI	CAYNNNNRTG	4 cut(s)	188, 372, 495, 746
SmlI	CTYRAG	1 cut(s)	797
SmoI	CTYRAG	1 cut(s)	797
Sse9I	AATT	3 cut(s)	210, 410, 591
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	1 cut(s)	770
StuI	AGGCCT	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	2 cut(s)	661, 754
TaqI	TCGA	3 cut(s)	52, 237, 705
TasI	AATT	3 cut(s)	210, 410, 591
TfiI	GAWTC	3 cut(s)	174, 234, 692
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	1 cut(s)	666
TseFI	GTSAC	1 cut(s)	737
TseI	GCWGC	1 cut(s)	228
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	2 cut(s)	141, 285
TspRI	CASTG	1 cut(s)	666
XapI	RAATTY	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.