Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001088

Physical Location & Seq

Genomic Coordinates Forward (+)

14265716 .. 14267960

Gene Structure 2245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0168900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCCATGGTCACTGCCTCTGCTCATTGTTCTCTCAAGCTTTCCTCTCCTTTGCTACGCACCTCTGCGTTTCCCACTATCCCAACAGCTTCCTCCAAATGCTTCTTCCCTTCGTCGTTGACGCCTGATTTATCTGCCACTAGAAGAAGAGCTCTCTTCTCTCCTTCAGTTATAAAAAGCAAAATTAGCCAAGATGTTGATTGTGTTGAGGAGGCTGAGCGGCTACAAATACAAGTGGGGAAGCCCAGTGAGACTTTCTTGTACTCCAATCTTCTGCCTCTGCTGTTTTTGGCTGCTCTCCCTGGAGCTGGTGCTGTGACATCTCTATTTGAGCCTTTCGTTGAGCTTGTCAAATCATTCAATCTTCCTGGATGGCTAGTGCATTGGGGTCATCCAGGCAACATGGCTGTTGTGCTTTTTGCAATGGGTGGCTATGGATCTTATCTTGGATACCGGATACGGTATTCTGATGATATGGAGGAGAAGGCCAAAGCCAAAGACTTGCACCCCAAGCTTCTAGCTGGGATGTTTTTCTTCTTTGCTGCTGGAGCTACTGGTGGAGTAACAGCTCTTCTCACTTCTGACAAACCCATTTTTGAGAGCTCTCATGCTGTCACTGGATTTATTGGCCTTGGTCTCTTGACCATTCAGACAATTTTACCTTCTTTGTTTGAGGGTAATCCAAACTTAAGAAGTGTTCATGGGGTCTTGGGTACTGGGATAATGACATTGTTTGTTGTCCATGCTGCTCTTGGACTTCAACTTGGTCTAAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0005986 GO:0006073 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009311 GO:0009312 GO:0009987 GO:0010467 GO:0016051 GO:0016070 GO:0016071 GO:0019252 GO:0032991 GO:0033692 GO:0034637 GO:0034641 GO:0034645 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046351 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos zf-C6H2

Protein Analysis

259

Amino Acids

27.73

Weight (kDa)

8.43

Isoelectric Point (pI)

31.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4079	PF13301	127 - 258	4.9e-27	Protein of unknown function (DUF4079)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58560 AT3G58580
fragaria_vesca	FvH4_5g37360 FvH4_5g37360 FvH4_5g37650 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630
malus_domestica	MD08G1182500.v1.1 MD12G1053300.v1.1 MD14G1051700.v1.1 MD15G1368200.v1.1 MD15G1368500.v1.1
prunus_persica	Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.7G084300_v2.0.a1
pyrus_communis	pycom08g15630 pycom15g33010 pycom15g33030
rosa_chinensis	RchiOBHm_Chr3g0478881 RchiOBHm_Chr7g0227401 RchiOBHm_Chr7g0239031
rosa_laevigata	RLG00000000789 RLG00000001657 RLG00000023618
rosa_multiflora	Rmu_sc0000868.1_g000004 Rmu_sc0004831.1_g000003 Rmu_sc0005651.1_g000003 Rmu_sc0005751.1_g000015
rosa_roxburghii	Rroxscaffold_3G00221350 Rroxscaffold_3G00237900 Rroxscaffold_3G00237980 Rroxscaffold_3G00238050 Rroxscaffold_5G00332920 Rroxscaffold_6G00403000 Rroxscaffold_6G00413120 Rroxscaffold_7G00214960
rosa_rugosa	Rorug03G0168800 Rorug03G0168900 Rorug07G0324800
rosa_samantha	Rh2DG401300 Rh3AG220500 Rh3BG252400 Rh3CG249200 Rh3DG245400 Rh6AG177800 Rh7AG393200 Rh7AG479600 Rh7BG452100 Rh7CG412400 Rh7CG497100 Rh7DG464600
rosa_wichuraiana	Rw2G030830 Rw3G019830 Rw6G015170 Rw7G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
AccBSI	CCGCTC	1 cut(s)	220
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	1 cut(s)	445
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	2 cut(s)	263, 715
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflII	CTTAAG	1 cut(s)	688
AgsI	TTSAA	2 cut(s)	361, 761
AjnI	CCWGG	3 cut(s)	301, 367, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
Alw21I	GWGCWC	2 cut(s)	154, 605
Alw26I	GTCTC	2 cut(s)	245, 641
AlwI	GGATC	1 cut(s)	445
AoxI	GGCC	3 cut(s)	3, 486, 628
ApeKI	GCWGC	3 cut(s)	293, 542, 746
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	154, 605
BarI	GAAGNNNNNNTAC	2 cut(s)	555, 587
Bbv12I	GWGCWC	2 cut(s)	154, 605
BbvI	GCAGC	3 cut(s)	280, 529, 733
BccI	CCATC	1 cut(s)	366
BciT130I	CCWGG	3 cut(s)	303, 369, 396
BciVI	GTATCC	2 cut(s)	443, 450
BcoDI	GTCTC	2 cut(s)	245, 641
BfaI	CTAG	3 cut(s)	141, 377, 518
BfrI	CTTAAG	1 cut(s)	688
BfuI	GTATCC	2 cut(s)	443, 450
BisI	GCNGC	4 cut(s)	221, 294, 543, 747
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	4 cut(s)	222, 295, 544, 748
Bme1390I	CCNGG	3 cut(s)	303, 369, 396
BmrFI	CCNGG	3 cut(s)	303, 369, 396
BmrI	ACTGGG	2 cut(s)	240, 726
BmuI	ACTGGG	2 cut(s)	240, 726
BpmI	CTGGAG	2 cut(s)	324, 567
Bpu1102I	GCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	641
BsaJI	CCNNGG	3 cut(s)	6, 301, 631
BsaWI	WCCGGW	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	4 cut(s)	246, 559, 622, 721
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	3 cut(s)	303, 369, 396
BseDI	CCNNGG	3 cut(s)	6, 301, 631
BseGI	GGATG	3 cut(s)	377, 391, 531
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	4 cut(s)	246, 559, 622, 721
BseRI	GAGGAG	2 cut(s)	224, 494
BseXI	GCAGC	3 cut(s)	280, 529, 733
BseYI	CCCAGC	1 cut(s)	521
BshFI	GGCC	3 cut(s)	5, 488, 630
BsiHKAI	GWGCWC	2 cut(s)	154, 605
BsiSI	CCGG	1 cut(s)	454
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	2 cut(s)	245, 641
BsnI	GGCC	3 cut(s)	5, 488, 630
Bso31I	GGTCTC	1 cut(s)	641
Bsp1286I	GDGCHC	2 cut(s)	154, 605
Bsp143I	GATC	1 cut(s)	437
Bsp1720I	GCTNAGC	1 cut(s)	216
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	3 cut(s)	5, 488, 630
BspCNI	CTCAG	1 cut(s)	208
BspPI	GGATC	1 cut(s)	445
BspQI	GCTCTTC	2 cut(s)	142, 576
BspTI	CTTAAG	1 cut(s)	688
BspTNI	GGTCTC	1 cut(s)	641
BsrBI	CCGCTC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	4 cut(s)	246, 559, 622, 721
BssECI	CCNNGG	3 cut(s)	6, 301, 631
BssMI	GATC	1 cut(s)	437
BssNI	GRCGYC	1 cut(s)	122
BssT1I	CCWWGG	2 cut(s)	6, 631
Bst2UI	CCWGG	3 cut(s)	303, 369, 396
Bst4CI	ACNGT	1 cut(s)	462
Bst6I	CTCTTC	3 cut(s)	142, 161, 576
BstACI	GRCGYC	1 cut(s)	122
BstAFI	CTTAAG	1 cut(s)	688
BstDEI	CTNAG	2 cut(s)	216, 770
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	3 cut(s)	377, 391, 531
BstKTI	GATC	1 cut(s)	440
BstMAI	GTCTC	2 cut(s)	245, 641
BstMBI	GATC	1 cut(s)	437
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 511, 548
BstNI	CCWGG	3 cut(s)	303, 369, 396
BstSCI	CCNGG	3 cut(s)	301, 367, 394
BstV1I	GCAGC	3 cut(s)	280, 529, 733
BstX2I	RGATCY	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	437
BsuI	GTATCC	2 cut(s)	443, 450
BsuRI	GGCC	3 cut(s)	5, 488, 630
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	3 cut(s)	377, 391, 531
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 253, 615
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	262, 714
CviAII	CATG	5 cut(s)	7, 403, 608, 701, 743
CviQI	GTAC	2 cut(s)	262, 714
DdeI	CTNAG	2 cut(s)	216, 770
DpnI	GATC	1 cut(s)	439
DpnII	GATC	1 cut(s)	437
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	142, 161, 576
EarI	CTCTTC	3 cut(s)	142, 161, 576
Ecl136II	GAGCTC	2 cut(s)	152, 603
Eco130I	CCWWGG	2 cut(s)	6, 631
Eco24I	GRGCYC	2 cut(s)	154, 605
Eco31I	GGTCTC	1 cut(s)	641
Eco53kI	GAGCTC	2 cut(s)	152, 603
Eco57I	CTGAAG	1 cut(s)	150
EcoICRI	GAGCTC	2 cut(s)	152, 603
EcoRII	CCWGG	3 cut(s)	301, 367, 394
EcoT14I	CCWWGG	2 cut(s)	6, 631
EcoT38I	GRGCYC	2 cut(s)	154, 605
ErhI	CCWWGG	2 cut(s)	6, 631
FaeI	CATG	5 cut(s)	10, 406, 611, 704, 746
FaiI	YATR	8 cut(s)	8, 173, 404, 435, 476, 609, 702, 744
FatI	CATG	5 cut(s)	6, 402, 607, 700, 742
Fnu4HI	GCNGC	4 cut(s)	221, 294, 543, 747
FokI	GGATG	3 cut(s)	378, 384, 538
FriOI	GRGCYC	2 cut(s)	154, 605
Fsp4HI	GCNGC	4 cut(s)	221, 294, 543, 747
FspBI	CTAG	3 cut(s)	141, 377, 518
GluI	GCNGC	4 cut(s)	221, 294, 543, 747
GsaI	CCCAGC	1 cut(s)	525
GsuI	CTGGAG	2 cut(s)	324, 567
HaeIII	GGCC	3 cut(s)	5, 488, 630
HapII	CCGG	1 cut(s)	454
HgaI	GACGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	5 cut(s)	10, 406, 611, 704, 746
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HindIII	AAGCTT	3 cut(s)	38, 512, 772
HpaII	CCGG	1 cut(s)	454
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	3 cut(s)	469, 583, 651
Hpy188III	TCNNGA	1 cut(s)	640
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	4 cut(s)	120, 174, 478, 672
HpyCH4III	ACNGT	1 cut(s)	462
HpyCH4V	TGCA	3 cut(s)	382, 422, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 511, 548
HpyF3I	CTNAG	2 cut(s)	216, 770
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	5 cut(s)	10, 406, 611, 704, 746
Kzo9I	GATC	1 cut(s)	437
LguI	GCTCTTC	2 cut(s)	142, 576
LmnI	GCTCC	2 cut(s)	305, 548
Lsp1109I	GCAGC	3 cut(s)	280, 529, 733
MaeI	CTAG	3 cut(s)	141, 377, 518
MaeIII	GTNAC	4 cut(s)	10, 316, 562, 613
MalI	GATC	1 cut(s)	439
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	1 cut(s)	437
MboII	GAAGA	8 cut(s)	97, 148, 156, 159, 263, 356, 526, 563
MflI	RGATCY	1 cut(s)	437
MhlI	GDGCHC	2 cut(s)	154, 605
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	183, 654
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	9 cut(s)	28, 55, 73, 103, 202, 205, 288, 472, 667
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	689
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	688
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	3 cut(s)	303, 369, 396
MvaI	CCWGG	3 cut(s)	303, 369, 396
MwoI	GCNNNNNNNGC	3 cut(s)	186, 511, 548
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	437
NlaIII	CATG	5 cut(s)	10, 406, 611, 704, 746
NmuCI	GTSAC	3 cut(s)	10, 316, 613
PciSI	GCTCTTC	2 cut(s)	142, 576
PfoI	TCCNGGA	1 cut(s)	367
PkrI	GCNGC	4 cut(s)	222, 295, 544, 748
PsiI	TTATAA	1 cut(s)	173
Psp124BI	GAGCTC	2 cut(s)	154, 605
Psp6I	CCWGG	3 cut(s)	301, 367, 394
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	3 cut(s)	301, 367, 394
PsuI	RGATCY	1 cut(s)	437
RsaI	GTAC	2 cut(s)	263, 715
RsaNI	GTAC	2 cut(s)	262, 714
SacI	GAGCTC	2 cut(s)	154, 605
SapI	GCTCTTC	2 cut(s)	142, 576
SaqAI	TTAA	1 cut(s)	689
SatI	GCNGC	4 cut(s)	221, 294, 543, 747
Sau3AI	GATC	1 cut(s)	437
ScrFI	CCNGG	3 cut(s)	303, 369, 396
SduI	GDGCHC	2 cut(s)	154, 605
SmlI	CTYRAG	2 cut(s)	35, 688
SmoI	CTYRAG	2 cut(s)	35, 688
Sse9I	AATT	2 cut(s)	183, 654
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	3 cut(s)	141, 377, 518
SstI	GAGCTC	2 cut(s)	154, 605
StyD4I	CCNGG	3 cut(s)	301, 367, 394
StyI	CCWWGG	2 cut(s)	6, 631
TaaI	ACNGT	1 cut(s)	462
TasI	AATT	2 cut(s)	183, 654
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	689
Tru9I	TTAA	1 cut(s)	689
TscAI	CASTG	3 cut(s)	19, 253, 622
TseFI	GTSAC	3 cut(s)	10, 316, 613
TseI	GCWGC	3 cut(s)	293, 542, 746
Tsp45I	GTSAC	3 cut(s)	10, 316, 613
TspDTI	ATGAA	1 cut(s)	689
TspRI	CASTG	3 cut(s)	19, 253, 622
Vha464I	CTTAAG	1 cut(s)	688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XspI	CTAG	3 cut(s)	141, 377, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.