pycom15g33010

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001088
Physical Location & Seq
Reverse (-)
32340203 .. 32345667
5465 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g33010.4

Sequence Viewer

Length: 1410 bp
ATGGCTCAAGAATCTGGGTCGTCTAAGTCCCCCAAATGGAGACTGAATCTGTATTTTCCTTCGAAGGCTCCTGCGTTCGGCTGCAGATTCCAGCCCCACATTCACATGCTCATAATCGATGACTCGTTTCAGTTCCCGCCTCACAAGTATTCTTTCACATGGTACCGAGAGGATGTTTGCTTGTCTCCCAATCAAGAGAAGGTTCGCTGTTATGTCCACCATGAAGAGTTGGCCACAATTCAGTGTACAGTTTGTGTAAGTCAAAATCGACTTGGCAAGATAAGTTACTATTGCTCTAGAAGTTGTTATAAGGCTGCCTGGGACAAGCACAAGGTGCACCATCATTTTGCAGCTCCAAATCCTAATCCACAAGCAGTGAAAATTATCAAGAGTTTTGGGCCTTATGGCTCCCATCCTGATTTACCTGACTATCAGGATGATGGTTCGCAGCCTGATGAGACGGTGGAACAAGATGGGAAAACATGGACTGAGGTGGGTTCTTCTGAATATTATGTACCCACAGAGAATGATATTGGATTTTGTCTGAGGCTCAAATTTGAAGTTGTTGATTCTTCAACGTTTACACAATTGTTCCCAGCAAGAATCAAAGTGACGGATCCTGTGATTTATCCTCCTCCTCATCCACCGCGTTGTACAATGTGGAACTCTTGCAACGCTGACCTCAAAGAACACTCTTCTAACGACGTAACCTTTAGGGTACTGTCCTATAATATCCTCGCTGATTATCTTGCTACTAGTGGTGGTAACTGGCACTTTTACTGCCCAGATTGGGCTCTTTCATGGGAATATCGTCAGCAAAATTTACTTTATGAGATCATTGAATATGACGCAGTTATCCTATGTCTTCAAGAGGTACAGAAAGATCATTTTGAGAATTTCCTCAAACCTGAGTTGGCAAAATATGGATACTCGGTTATATACAAGAAGAAAAAGTTCGAGACATATTCGTTTAAGTCCCATCATACAACTGATGGATGTGCTACATTTTACCGCTGTCAACGATTCAAAGAGATTGCAACATATGAGCTTGAGTTTAATAATTCAGCAAAGCCCTTTGTTGATTCATTGGTTGGTAAACAGAAAAGTGAAGCTCGCCGTCTGCTGAAGGACAATGTTGCACTTGTTGTTATATTAGAAATGGTGGAAAATGAGGACTCCTCTGATGGAAATCGACCTAGAATTTGTGTGACCCATTTACATGCAAATGTAAAAAATCCAGACATAAAATTACTGCAGGTTGTAACACTCATCCATGCACTTGAGAAAATTGCCAAGTTGAAGATTCCCCTGTTGATTTGTGCAGATTTGAACTCTGTGCCTCAAAGTGATCCTTATACGTTCATAAGCAAGGGCAGAGTTGAGATTCTTCCCAACAAAGAAACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Exo_endo_phos zf-C6H2

Protein Analysis

470

Amino Acids

54.11

Weight (kDa)

6.55

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 1246
Acc65I GGTACC 1 cut(s) 162
AccB1I GGYRCC 1 cut(s) 162
AccII CGCG 1 cut(s) 649
AciI CCGC 3 cut(s) 137, 647, 1012
AclI AACGTT 1 cut(s) 578
AclWI GGATC 3 cut(s) 611, 624, 1343
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 4 cut(s) 554, 820, 895, 1200
AcuI CTGAAG 1 cut(s) 1145
AdeI CACNNNGTG 1 cut(s) 334
AfaI GTAC 6 cut(s) 164, 247, 516, 655, 720, 876
AfiI CCNNNNNNNGG 3 cut(s) 36, 77, 790
AgsI TTSAA 7 cut(s) 560, 576, 842, 869, 1027, 1300, 1330
AhlI ACTAGT 1 cut(s) 755
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 3 cut(s) 353, 1048, 1112
AluI AGCT 3 cut(s) 353, 1048, 1112
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 4 cut(s) 34, 189, 452, 953
Alw44I GTGCAC 1 cut(s) 335
AlwI GGATC 3 cut(s) 611, 624, 1343
AoxI GGCC 2 cut(s) 231, 398
ApaLI GTGCAC 1 cut(s) 335
ApeKI GCWGC 4 cut(s) 81, 314, 350, 448
ApoI RAATTY 4 cut(s) 554, 820, 895, 1200
ArsI GACNNNNNNTTYG 2 cut(s) 1185, 1217
Asp700I GAANNNNTTC 1 cut(s) 953
Asp718I GGTACC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 398
AsuII TTCGAA 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 339
BalI TGGCCA 1 cut(s) 233
BamHI GGATCC 1 cut(s) 616
BanI GGYRCC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 796
BbsI GAAGAC 1 cut(s) 857
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 4 cut(s) 68, 301, 362, 460
BccI CCATC 7 cut(s) 348, 420, 434, 467, 986, 987, 1178
BceAI ACGGC 1 cut(s) 1101
BciT130I CCWGG 1 cut(s) 319
BciVI GTATCC 1 cut(s) 920
BcoDI GTCTC 4 cut(s) 34, 189, 452, 953
BcuI ACTAGT 1 cut(s) 755
BfaI CTAG 3 cut(s) 297, 756, 1197
BfmI CTRYAG 2 cut(s) 82, 1253
BfuAI ACCTGC 1 cut(s) 1246
BfuI GTATCC 1 cut(s) 920
BisI GCNGC 4 cut(s) 82, 315, 351, 449
BlsI GCNGC 4 cut(s) 83, 316, 352, 450
Bme1390I CCNGG 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 4 cut(s) 69, 164, 409, 618
BmrFI CCNGG 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 857
BplI GAGNNNNNCTC 2 cut(s) 1163, 1195
Bpu14I TTCGAA 1 cut(s) 62
BpuEI CTTGAG 2 cut(s) 1070, 1301
Bsa29I ATCGAT 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 1188
BsaJI CCNNGG 1 cut(s) 318
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 77, 790
Bse1I ACTGG 1 cut(s) 773
Bse8I GATNNNNATC 1 cut(s) 1188
BseBI CCWGG 1 cut(s) 319
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 6 cut(s) 178, 412, 442, 640, 1001, 1269
BseJI GATNNNNATC 1 cut(s) 1188
BseLI CCNNNNNNNGG 3 cut(s) 36, 77, 790
BseMII CTCAG 3 cut(s) 480, 536, 900
BseNI ACTGG 1 cut(s) 773
BseRI GAGGAG 3 cut(s) 624, 627, 1168
BseSI GKGCMC 1 cut(s) 339
BseXI GCAGC 4 cut(s) 68, 301, 362, 460
BseYI CCCAGC 1 cut(s) 595
BsgI GTGCAG 1 cut(s) 1341
Bsh1236I CGCG 1 cut(s) 649
BshFI GGCC 2 cut(s) 233, 400
BshNI GGYRCC 1 cut(s) 162
BshVI ATCGAT 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 339
BslFI GGGAC 3 cut(s) 13, 335, 961
BslI CCNNNNNNNGG 3 cut(s) 36, 77, 790
BsmAI GTCTC 4 cut(s) 34, 189, 452, 953
BsmBI CGTCTC 1 cut(s) 452
BsmFI GGGAC 3 cut(s) 13, 335, 961
BsnI GGCC 2 cut(s) 233, 400
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 339, 796
Bsp1407I TGTACA 2 cut(s) 245, 653
Bsp143I GATC 4 cut(s) 616, 834, 883, 1348
BspACI CCGC 3 cut(s) 137, 647, 1012
BspANI GGCC 2 cut(s) 233, 400
BspCNI CTCAG 3 cut(s) 481, 537, 901
BspDI ATCGAT 1 cut(s) 117
BspFNI CGCG 1 cut(s) 649
BspLI GGNNCC 4 cut(s) 69, 164, 409, 618
BspMAI CTGCAG 2 cut(s) 86, 1257
BspMI ACCTGC 1 cut(s) 1246
BspPI GGATC 3 cut(s) 611, 624, 1343
BspT104I TTCGAA 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 162
BsrGI TGTACA 2 cut(s) 245, 653
BsrI ACTGG 1 cut(s) 773
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 4 cut(s) 616, 834, 883, 1348
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 3 cut(s) 250, 463, 723
Bst6I CTCTTC 2 cut(s) 219, 700
BstAPI GCANNNNNTGC 1 cut(s) 334
BstAUI TGTACA 2 cut(s) 245, 653
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 1114
BstDEI CTNAG 4 cut(s) 24, 489, 545, 909
BstF5I GGATG 6 cut(s) 178, 412, 442, 640, 1001, 1269
BstFNI CGCG 1 cut(s) 649
BstKTI GATC 4 cut(s) 619, 837, 886, 1351
BstMAI GTCTC 4 cut(s) 34, 189, 452, 953
BstMBI GATC 4 cut(s) 616, 834, 883, 1348
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 1 cut(s) 319
BstNSI RCATGY 2 cut(s) 109, 1223
BstSCI CCNGG 1 cut(s) 317
BstSFI CTRYAG 2 cut(s) 82, 1253
BstSLI GKGCMC 1 cut(s) 339
BstUI CGCG 1 cut(s) 649
BstV1I GCAGC 4 cut(s) 68, 301, 362, 460
BstV2I GAAGAC 1 cut(s) 857
BstX2I RGATCY 1 cut(s) 616
BstYI RGATCY 1 cut(s) 616
Bsu15I ATCGAT 1 cut(s) 117
BsuI GTATCC 1 cut(s) 920
BsuRI GGCC 2 cut(s) 233, 400
BsuTUI ATCGAT 1 cut(s) 117
BtsCI GGATG 6 cut(s) 178, 412, 442, 640, 1001, 1269
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 248, 381
BveI ACCTGC 1 cut(s) 1246
Cac8I GCNNGC 1 cut(s) 1114
Cfr13I GGNCC 1 cut(s) 398
ClaI ATCGAT 1 cut(s) 117
CseI GACGC 1 cut(s) 857
Csp6I GTAC 6 cut(s) 163, 246, 515, 654, 719, 875
CviAII CATG 7 cut(s) 106, 159, 221, 483, 801, 1220, 1274
CviQI GTAC 6 cut(s) 163, 246, 515, 654, 719, 875
DdeI CTNAG 4 cut(s) 24, 489, 545, 909
DpnI GATC 4 cut(s) 618, 836, 885, 1350
DpnII GATC 4 cut(s) 616, 834, 883, 1348
DraIII CACNNNGTG 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 2 cut(s) 219, 700
EarI CTCTTC 2 cut(s) 219, 700
Eco24I GRGCYC 1 cut(s) 796
Eco57I CTGAAG 1 cut(s) 1145
EcoRII CCWGG 1 cut(s) 317
EcoT38I GRGCYC 1 cut(s) 796
Esp3I CGTCTC 1 cut(s) 452
FaeI CATG 7 cut(s) 109, 162, 224, 486, 804, 1223, 1277
FalI AAGNNNNNCTT 2 cut(s) 1336, 1368
FaqI GGGAC 3 cut(s) 13, 335, 961
FatI CATG 7 cut(s) 105, 158, 220, 482, 800, 1219, 1273
FauI CCCGC 1 cut(s) 144
FauNDI CATATG 1 cut(s) 1042
Fnu4HI GCNGC 4 cut(s) 82, 315, 351, 449
FokI GGATG 6 cut(s) 185, 399, 449, 627, 1008, 1256
FriOI GRGCYC 1 cut(s) 796
Fsp4HI GCNGC 4 cut(s) 82, 315, 351, 449
FspBI CTAG 3 cut(s) 297, 756, 1197
GluI GCNGC 4 cut(s) 82, 315, 351, 449
GsaI CCCAGC 1 cut(s) 599
HaeIII GGCC 2 cut(s) 233, 400
HgaI GACGC 1 cut(s) 857
Hin1II CATG 7 cut(s) 109, 162, 224, 486, 804, 1223, 1277
HincII GTYRAC 1 cut(s) 1019
HindII GTYRAC 1 cut(s) 1019
Hpy166II GTNNAC 6 cut(s) 217, 246, 337, 582, 1019, 1097
Hpy188I TCNGA 3 cut(s) 505, 546, 1183
Hpy188III TCNNGA 9 cut(s) 8, 194, 297, 388, 416, 434, 869, 958, 1238
Hpy8I GTNNAC 6 cut(s) 217, 246, 337, 582, 1019, 1097
Hpy99I CGWCG 1 cut(s) 707
HpyAV CCTTC 4 cut(s) 58, 69, 193, 1120
HpyCH4III ACNGT 3 cut(s) 250, 463, 723
HpyCH4IV ACGT 3 cut(s) 578, 705, 1358
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 4 cut(s) 24, 489, 545, 909
HpySE526I ACGT 3 cut(s) 578, 705, 1358
Hsp92II CATG 7 cut(s) 109, 162, 224, 486, 804, 1223, 1277
KpnI GGTACC 1 cut(s) 166
Kzo9I GATC 4 cut(s) 616, 834, 883, 1348
LmnI GCTCC 3 cut(s) 73, 358, 413
Lsp1109I GCAGC 4 cut(s) 68, 301, 362, 460
MaeI CTAG 3 cut(s) 297, 756, 1197
MaeII ACGT 3 cut(s) 578, 705, 1358
MaeIII GTNAC 6 cut(s) 284, 610, 706, 764, 1207, 1261
MalI GATC 4 cut(s) 618, 836, 885, 1350
MboI GATC 4 cut(s) 616, 834, 883, 1348
MboII GAAGA 8 cut(s) 236, 492, 564, 687, 857, 958, 1312, 1379
MfeI CAATTG 1 cut(s) 587
MflI RGATCY 1 cut(s) 616
MhlI GDGCHC 2 cut(s) 339, 796
MlsI TGGCCA 1 cut(s) 233
MluNI TGGCCA 1 cut(s) 233
MlyI GAGTC 2 cut(s) 116, 1169
Mox20I TGGCCA 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 953
MscI TGGCCA 1 cut(s) 233
MseI TTAA 3 cut(s) 972, 1056, 1408
MslI CAYNNNNRTG 3 cut(s) 104, 1218, 1224
Msp20I TGGCCA 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 1014
MspR9I CCNGG 1 cut(s) 319
MunI CAATTG 1 cut(s) 587
MvaI CCWGG 1 cut(s) 319
MvnI CGCG 1 cut(s) 649
MwoI GCNNNNNNNGC 1 cut(s) 334
NdeI CATATG 1 cut(s) 1042
NdeII GATC 4 cut(s) 616, 834, 883, 1348
NlaIII CATG 7 cut(s) 109, 162, 224, 486, 804, 1223, 1277
NlaIV GGNNCC 4 cut(s) 69, 164, 409, 618
NmuCI GTSAC 2 cut(s) 610, 1207
NspI RCATGY 2 cut(s) 109, 1223
NspV TTCGAA 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 953
PfeI GAWTC 9 cut(s) 11, 46, 87, 569, 603, 1023, 1082, 1303, 1384
PkrI GCNGC 4 cut(s) 83, 316, 352, 450
PleI GAGTC 2 cut(s) 116, 1169
PpsI GAGTC 2 cut(s) 116, 1169
PsiI TTATAA 1 cut(s) 309
Psp1406I AACGTT 1 cut(s) 578
Psp6I CCWGG 1 cut(s) 317
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 4 cut(s) 69, 164, 409, 618
PspPI GGNCC 1 cut(s) 398
PstI CTGCAG 2 cut(s) 86, 1257
PsuI RGATCY 1 cut(s) 616
RsaI GTAC 6 cut(s) 164, 247, 516, 655, 720, 876
RsaNI GTAC 6 cut(s) 163, 246, 515, 654, 719, 875
RseI CAYNNNNRTG 3 cut(s) 104, 1218, 1224
SaqAI TTAA 3 cut(s) 972, 1056, 1408
SatI GCNGC 4 cut(s) 82, 315, 351, 449
Sau3AI GATC 4 cut(s) 616, 834, 883, 1348
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 2 cut(s) 116, 1169
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 2 cut(s) 339, 796
SfcI CTRYAG 2 cut(s) 82, 1253
SfuI TTCGAA 1 cut(s) 62
SmiMI CAYNNNNRTG 3 cut(s) 104, 1218, 1224
SmlI CTYRAG 3 cut(s) 6, 1049, 1280
SmoI CTYRAG 3 cut(s) 6, 1049, 1280
SpeI ACTAGT 1 cut(s) 755
SsiI CCGC 3 cut(s) 137, 647, 1012
SspI AATATT 1 cut(s) 509
SspMI CTAG 3 cut(s) 297, 756, 1197
StyD4I CCNGG 1 cut(s) 317
TaaI ACNGT 3 cut(s) 250, 463, 723
TaiI ACGT 3 cut(s) 581, 708, 1361
TaqI TCGA 5 cut(s) 62, 117, 268, 957, 1192
TatI WGTACW 2 cut(s) 245, 653
TfiI GAWTC 9 cut(s) 11, 46, 87, 569, 603, 1023, 1082, 1303, 1384
Tru1I TTAA 3 cut(s) 972, 1056, 1408
Tru9I TTAA 3 cut(s) 972, 1056, 1408
TscAI CASTG 2 cut(s) 248, 381
TseFI GTSAC 2 cut(s) 610, 1207
TseI GCWGC 4 cut(s) 81, 314, 350, 448
Tsp45I GTSAC 2 cut(s) 610, 1207
TspDTI ATGAA 4 cut(s) 237, 789, 1074, 1351
TspGWI ACGGA 1 cut(s) 629
TspRI CASTG 2 cut(s) 248, 381
VneI GTGCAC 1 cut(s) 335
XapI RAATTY 4 cut(s) 554, 820, 895, 1200
XbaI TCTAGA 1 cut(s) 296
XceI RCATGY 2 cut(s) 109, 1223
XmnI GAANNNNTTC 1 cut(s) 953
XspI CTAG 3 cut(s) 297, 756, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.