Rmu_sc0005651.1_g000003

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005651.1
OG0001088
Physical Location & Seq
Reverse (-)
19638 .. 26994
7357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005651.1_g000003.1.cds

Sequence Viewer

Length: 1764 bp
atggatcctcctcaaaatcccaatgtgggttcttcttcttctcgaagacctgatatgggttcctcttcttctccaagacctgaagtgggttcttcttcttcttcaacaagacctgaagtgggttcttcttcttcatcttctttgagcttaacgacattcagtctcagcgtgaagatgggcaacacacaatcaatcacaccagtcttcggctgcagaatcgaccccacagctcgtgtgcccaagaaggacgatgaagttccccccgagcacgagttcagtttcaaatggtatcgggagtatattagcccttctatccccagagacaagatcaagtgctctatccaccctgatgaggtggccactttccagtgtaatgattgtgtcaaattgaagttaccattcaagggaagttatcattgctctcccacttgttattctgaggcatgggataaacacaggatgtgccatcgttgtgctaaagctgttggtgagacttcttctaataatcaacaagcagaagaagagatgtatagctggcttgactttgaagatgatccactcaatgaaattccaaagctggaacgagatggaaaacaatgggttgaggtgtgctcttcaaggtgttatgtacccacagtgaatgaccttaactgcaggttgatgctggaatctaaggctgttgattgttcaactggtctggatttgtgcctgagtgacatcatcatgacagttcctgttttttatccgcctcatcagaaacctcgctccatgcttgagtgtcggcggaagcttggggactctgatctcaaagtgcacacttgcagtggtgtaaaatttagtgtgctatcatataatgtccttggtaatctttatattgatccgtttaggtactcttactgcccagaatgggctaggtcttgggaatatcgtcagcagaatttactaaacgagatcattgaatatgatgcagacatcctctgtcttcaagaggtacaaagtaatcatcttgagtatttcttcgaacctgagttggcaaaatgtggatattctgttatatacaagaagagaagaggatcacgtgcgtttgatagctctgttatgagagtgatagaagcattgcagccattggaaactcaacagagaaatagagcttgtataaggctgcagaaggacaatgttgcacttgttgttatattagaaaaactggaaaagggcacttgcgatggaattcaacctagaatttgtgtggttgtggacctgattactggactggacaaaattgccaagatgaaaattcctctgttggtttgtggagatttcaactctcttcctctgagtgagcctcataagttcataactgctggcagagtcgacaatcttcccaacgatactgatccatttggcatatgtcagcatctaaagcttcaccattcacttccactgaaaagtgcatatgcatctttttataactcggatggtatcgaggaggaacaacgtaggaagttcaattctgaaagcagggagcctttgttcacccacttcacaccaagtttcacaggaaccctagattacctattctacacagaggatagtttgacgcttgatggtgtgttggagctacttgaccgtgacaatctgggtgttggtattccatctcctttttggtcatcagatcatattgccctcattgcacggtttgtcctcaattcaacctctccccagcaacagggttcacaagcaattcctgctgacttgtggccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Exo_endo_phos zf-C6H2

Protein Analysis

587

Amino Acids

66.4

Weight (kDa)

5.63

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1467
Acc36I ACCTGC 1 cut(s) 645
AccI GTMKAC 1 cut(s) 1371
AciI CCGC 2 cut(s) 746, 784
AclWI GGATC 5 cut(s) 12, 548, 872, 1081, 1388
AcoI YGGCCR 2 cut(s) 357, 1757
AcsI RAATTY 6 cut(s) 567, 833, 937, 1227, 1239, 1293
AcuI CTGAAG 2 cut(s) 102, 135
AcvI CACGTG 1 cut(s) 1079
AfaI GTAC 3 cut(s) 630, 890, 993
AfiI CCNNNNNNNGG 9 cut(s) 26, 56, 86, 119, 206, 352, 404, 907, 1726
AhdI GACNNNNNGTC 1 cut(s) 159
AloI GAACNNNNNNTCC 2 cut(s) 1514, 1546
Alw21I GWGCWC 4 cut(s) 270, 338, 614, 816
Alw26I GTCTC 3 cut(s) 167, 315, 485
Alw44I GTGCAC 1 cut(s) 812
AlwI GGATC 5 cut(s) 12, 548, 872, 1081, 1388
AlwNI CAGNNNCTG 1 cut(s) 734
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 2 cut(s) 357, 1757
ApaLI GTGCAC 1 cut(s) 812
ApeKI GCWGC 3 cut(s) 210, 1120, 1162
ApoI RAATTY 6 cut(s) 567, 833, 937, 1227, 1239, 1293
AspS9I GGNCC 1 cut(s) 1255
AsuHPI GGTGA 3 cut(s) 500, 1418, 1525
AsuII TTCGAA 1 cut(s) 1020
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 1255
BaeGI GKGCMC 3 cut(s) 240, 816, 1217
BalI TGGCCA 2 cut(s) 359, 1759
BamHI GGATCC 1 cut(s) 4
BauI CACGAG 2 cut(s) 231, 269
BbrPI CACGTG 1 cut(s) 1079
BbsI GAAGAC 3 cut(s) 52, 196, 974
Bbv12I GWGCWC 4 cut(s) 270, 338, 614, 816
BbvI GCAGC 3 cut(s) 197, 1132, 1149
BccI CCATC 7 cut(s) 169, 474, 581, 1217, 1469, 1598, 1660
BcoDI GTCTC 3 cut(s) 167, 315, 485
BfaI CTAG 3 cut(s) 912, 1236, 1565
BfmI CTRYAG 3 cut(s) 211, 652, 1163
BfuAI ACCTGC 1 cut(s) 645
BisI GCNGC 3 cut(s) 211, 1121, 1163
BlsI GCNGC 3 cut(s) 212, 1122, 1164
Bme18I GGWCC 1 cut(s) 1255
BmeRI GACNNNNNGTC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 1255
BmiI GGNNCC 4 cut(s) 6, 61, 1524, 1561
BmsI GCATC 4 cut(s) 651, 955, 1423, 1466
BpiI GAAGAC 3 cut(s) 52, 196, 974
BplI GAGNNNNNCTC 4 cut(s) 596, 628, 1327, 1359
Bpu14I TTCGAA 1 cut(s) 1020
BpuEI CTTGAG 2 cut(s) 794, 1028
BsaAI YACGTR 1 cut(s) 1079
BsaBI GATNNNNATC 1 cut(s) 1392
BsaJI CCNNGG 1 cut(s) 859
BsaXI ACNNNNNCTCC 2 cut(s) 1514, 1544
Bsc4I CCNNNNNNNGG 9 cut(s) 26, 56, 86, 119, 206, 352, 404, 907, 1726
Bse1I ACTGG 6 cut(s) 200, 367, 697, 1209, 1270, 1275
Bse3DI GCAATG 3 cut(s) 415, 1115, 1686
Bse8I GATNNNNATC 1 cut(s) 1392
BseDI CCNNGG 1 cut(s) 859
BseGI GGATG 3 cut(s) 465, 972, 1480
BseJI GATNNNNATC 1 cut(s) 1392
BseLI CCNNNNNNNGG 9 cut(s) 26, 56, 86, 119, 206, 352, 404, 907, 1726
BseMI GCAATG 3 cut(s) 415, 1115, 1686
BseMII CTCAG 5 cut(s) 178, 429, 701, 1017, 1325
BseNI ACTGG 6 cut(s) 200, 367, 697, 1209, 1270, 1275
BseRI GAGGAG 1 cut(s) 1499
BseSI GKGCMC 3 cut(s) 240, 816, 1217
BseXI GCAGC 3 cut(s) 197, 1132, 1149
BseYI CCCAGC 1 cut(s) 1719
BshFI GGCC 2 cut(s) 359, 1759
BsiHKAI GWGCWC 4 cut(s) 270, 338, 614, 816
BsiHKCI CYCGRG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 809
BslI CCNNNNNNNGG 9 cut(s) 26, 56, 86, 119, 206, 352, 404, 907, 1726
BsmAI GTCTC 3 cut(s) 167, 315, 485
BsmFI GGGAC 1 cut(s) 809
BsnI GGCC 2 cut(s) 359, 1759
BsoBI CYCGRG 1 cut(s) 263
Bsp119I TTCGAA 1 cut(s) 1020
Bsp1286I GDGCHC 6 cut(s) 240, 270, 338, 614, 816, 1217
Bsp143I GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1393, 1672
BspACI CCGC 2 cut(s) 746, 784
BspANI GGCC 2 cut(s) 359, 1759
BspCNI CTCAG 5 cut(s) 177, 430, 702, 1018, 1326
BspHI TCATGA 1 cut(s) 723
BspLI GGNNCC 4 cut(s) 6, 61, 1524, 1561
BspMAI CTGCAG 3 cut(s) 215, 656, 1167
BspMI ACCTGC 1 cut(s) 645
BspPI GGATC 5 cut(s) 12, 548, 872, 1081, 1388
BspQI GCTCTTC 1 cut(s) 619
BspT104I TTCGAA 1 cut(s) 1020
BsrDI GCAATG 3 cut(s) 415, 1115, 1686
BsrI ACTGG 6 cut(s) 200, 367, 697, 1209, 1270, 1275
BssECI CCNNGG 1 cut(s) 859
BssMI GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1393, 1672
BssSI CACGAG 2 cut(s) 231, 269
BssT1I CCWWGG 1 cut(s) 859
Bst2BI CACGAG 2 cut(s) 231, 269
Bst4CI ACNGT 4 cut(s) 637, 730, 1628, 1695
Bst6I CTCTTC 6 cut(s) 70, 516, 619, 1058, 1063, 1332
BstAPI GCANNNNNTGC 1 cut(s) 1745
BstBAI YACGTR 1 cut(s) 1079
BstBI TTCGAA 1 cut(s) 1020
BstC8I GCNNGC 2 cut(s) 536, 1363
BstDEI CTNAG 6 cut(s) 164, 438, 672, 710, 1026, 1334
BstF5I GGATG 3 cut(s) 465, 972, 1480
BstKTI GATC 9 cut(s) 7, 330, 556, 805, 880, 954, 1076, 1396, 1675
BstMAI GTCTC 3 cut(s) 167, 315, 485
BstMBI GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1393, 1672
BstMWI GCNNNNNNNGC 3 cut(s) 1420, 1688, 1745
BstSFI CTRYAG 3 cut(s) 211, 652, 1163
BstSLI GKGCMC 3 cut(s) 240, 816, 1217
BstV1I GCAGC 3 cut(s) 197, 1132, 1149
BstV2I GAAGAC 3 cut(s) 52, 196, 974
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 359, 1759
BtgZI GCGATG 1 cut(s) 1236
BtsCI GGATG 3 cut(s) 465, 972, 1480
BtsI GCAGTG 1 cut(s) 829
BtsIMutI CAGTG 4 cut(s) 374, 642, 829, 1439
BveI ACCTGC 1 cut(s) 645
Cac8I GCNNGC 2 cut(s) 536, 1363
CaiI CAGNNNCTG 1 cut(s) 734
CciI TCATGA 1 cut(s) 723
Cfr13I GGNCC 1 cut(s) 1255
CseI GACGC 1 cut(s) 1606
Csp6I GTAC 3 cut(s) 629, 889, 992
CviAII CATG 3 cut(s) 444, 724, 769
CviQI GTAC 3 cut(s) 629, 889, 992
DdeI CTNAG 6 cut(s) 164, 438, 672, 710, 1026, 1334
DpnI GATC 9 cut(s) 6, 329, 555, 804, 879, 953, 1075, 1395, 1674
DpnII GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1393, 1672
DriI GACNNNNNGTC 1 cut(s) 159
EaeI YGGCCR 2 cut(s) 357, 1757
Eam1104I CTCTTC 6 cut(s) 70, 516, 619, 1058, 1063, 1332
Eam1105I GACNNNNNGTC 1 cut(s) 159
EarI CTCTTC 6 cut(s) 70, 516, 619, 1058, 1063, 1332
EciI GGCGGA 2 cut(s) 735, 799
Eco130I CCWWGG 1 cut(s) 859
Eco47I GGWCC 1 cut(s) 1255
Eco57I CTGAAG 2 cut(s) 102, 135
Eco72I CACGTG 1 cut(s) 1079
Eco88I CYCGRG 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 1227
EcoT14I CCWWGG 1 cut(s) 859
EcoT22I ATGCAT 1 cut(s) 1459
ErhI CCWWGG 1 cut(s) 859
FaeI CATG 3 cut(s) 447, 727, 772
FaqI GGGAC 1 cut(s) 809
FatI CATG 3 cut(s) 443, 723, 768
FauNDI CATATG 2 cut(s) 1406, 1453
FblI GTMKAC 1 cut(s) 1371
Fnu4HI GCNGC 3 cut(s) 211, 1121, 1163
FokI GGATG 3 cut(s) 472, 959, 1487
Fsp4HI GCNGC 3 cut(s) 211, 1121, 1163
FspBI CTAG 3 cut(s) 912, 1236, 1565
GluI GCNGC 3 cut(s) 211, 1121, 1163
GsaI CCCAGC 1 cut(s) 1723
HaeIII GGCC 2 cut(s) 359, 1759
HgaI GACGC 1 cut(s) 1606
Hin1II CATG 3 cut(s) 447, 727, 772
HincII GTYRAC 1 cut(s) 1372
HindII GTYRAC 1 cut(s) 1372
HindIII AAGCTT 2 cut(s) 788, 1421
HinfI GANTC 4 cut(s) 216, 668, 797, 1368
HphI GGTGA 3 cut(s) 500, 1418, 1525
Hpy166II GTNNAC 5 cut(s) 814, 1255, 1372, 1533, 1733
Hpy188I TCNGA 7 cut(s) 439, 756, 802, 1335, 1474, 1513, 1672
Hpy188III TCNNGA 6 cut(s) 42, 293, 698, 724, 986, 1007
Hpy8I GTNNAC 5 cut(s) 814, 1255, 1372, 1533, 1733
HpyAV CCTTC 3 cut(s) 238, 318, 1162
HpyCH4III ACNGT 4 cut(s) 637, 730, 1628, 1695
HpyCH4IV ACGT 2 cut(s) 1078, 1495
HpyF10VI GCNNNNNNNGC 3 cut(s) 1420, 1688, 1745
HpyF3I CTNAG 6 cut(s) 164, 438, 672, 710, 1026, 1334
HpySE526I ACGT 2 cut(s) 1078, 1495
Hsp92II CATG 3 cut(s) 447, 727, 772
Kzo9I GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1393, 1672
LguI GCTCTTC 1 cut(s) 619
LmnI GCTCC 3 cut(s) 770, 1522, 1615
Lsp1109I GCAGC 3 cut(s) 197, 1132, 1149
LweI GCATC 4 cut(s) 651, 955, 1423, 1466
MaeI CTAG 3 cut(s) 912, 1236, 1565
MaeII ACGT 2 cut(s) 1078, 1495
MaeIII GTNAC 3 cut(s) 393, 713, 1628
MalI GATC 9 cut(s) 6, 329, 555, 804, 879, 953, 1075, 1395, 1674
MboI GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1393, 1672
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 6 cut(s) 240, 270, 338, 614, 816, 1217
MlsI TGGCCA 2 cut(s) 359, 1759
MluNI TGGCCA 2 cut(s) 359, 1759
MlyI GAGTC 2 cut(s) 791, 1377
MmeI TCCRAC 1 cut(s) 1593
Mox20I TGGCCA 2 cut(s) 359, 1759
Mph1103I ATGCAT 1 cut(s) 1459
MscI TGGCCA 2 cut(s) 359, 1759
MseI TTAA 2 cut(s) 149, 648
MslI CAYNNNNRTG 3 cut(s) 348, 471, 722
Msp20I TGGCCA 2 cut(s) 359, 1759
MwoI GCNNNNNNNGC 3 cut(s) 1420, 1688, 1745
NdeI CATATG 2 cut(s) 1406, 1453
NdeII GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1393, 1672
NlaIII CATG 3 cut(s) 447, 727, 772
NlaIV GGNNCC 4 cut(s) 6, 61, 1524, 1561
NmuCI GTSAC 2 cut(s) 713, 1628
NsiI ATGCAT 1 cut(s) 1459
NspV TTCGAA 1 cut(s) 1020
PagI TCATGA 1 cut(s) 723
PciSI GCTCTTC 1 cut(s) 619
PfeI GAWTC 2 cut(s) 216, 668
PkrI GCNGC 3 cut(s) 212, 1122, 1164
PleI GAGTC 2 cut(s) 791, 1376
PmaCI CACGTG 1 cut(s) 1079
PmlI CACGTG 1 cut(s) 1079
PpsI GAGTC 2 cut(s) 791, 1376
Ppu21I YACGTR 1 cut(s) 1079
PsiI TTATAA 1 cut(s) 1467
PspCI CACGTG 1 cut(s) 1079
PspFI CCCAGC 1 cut(s) 1719
PspN4I GGNNCC 4 cut(s) 6, 61, 1524, 1561
PspPI GGNCC 1 cut(s) 1255
PstI CTGCAG 3 cut(s) 215, 656, 1167
PstNI CAGNNNCTG 1 cut(s) 734
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 3 cut(s) 630, 890, 993
RsaNI GTAC 3 cut(s) 629, 889, 992
RseI CAYNNNNRTG 3 cut(s) 348, 471, 722
SalI GTCGAC 1 cut(s) 1370
SapI GCTCTTC 1 cut(s) 619
SaqAI TTAA 2 cut(s) 149, 648
SatI GCNGC 3 cut(s) 211, 1121, 1163
Sau3AI GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1393, 1672
Sau96I GGNCC 1 cut(s) 1255
SchI GAGTC 2 cut(s) 791, 1377
SduI GDGCHC 6 cut(s) 240, 270, 338, 614, 816, 1217
SfaNI GCATC 4 cut(s) 651, 955, 1423, 1466
SfcI CTRYAG 3 cut(s) 211, 652, 1163
SfuI TTCGAA 1 cut(s) 1020
SinI GGWCC 1 cut(s) 1255
SmiMI CAYNNNNRTG 3 cut(s) 348, 471, 722
SmlI CTYRAG 2 cut(s) 773, 1007
SmoI CTYRAG 2 cut(s) 773, 1007
SsiI CCGC 2 cut(s) 746, 784
SspMI CTAG 3 cut(s) 912, 1236, 1565
StyI CCWWGG 1 cut(s) 859
TaaI ACNGT 4 cut(s) 637, 730, 1628, 1695
TaiI ACGT 2 cut(s) 1081, 1498
TaqI TCGA 5 cut(s) 43, 219, 1020, 1371, 1482
TfiI GAWTC 2 cut(s) 216, 668
Tru1I TTAA 2 cut(s) 149, 648
Tru9I TTAA 2 cut(s) 149, 648
TscAI CASTG 4 cut(s) 374, 642, 829, 1446
TseFI GTSAC 2 cut(s) 713, 1628
TseI GCWGC 3 cut(s) 210, 1120, 1162
Tsp45I GTSAC 2 cut(s) 713, 1628
TspDTI ATGAA 5 cut(s) 123, 267, 579, 1304, 1342
TspGWI ACGGA 1 cut(s) 870
TspRI CASTG 4 cut(s) 374, 642, 829, 1446
VneI GTGCAC 1 cut(s) 812
VpaK11BI GGWCC 1 cut(s) 1255
XapI RAATTY 6 cut(s) 567, 833, 937, 1227, 1239, 1293
XcmI CCANNNNNNNNNTGG 1 cut(s) 1659
XmiI GTMKAC 1 cut(s) 1371
XspI CTAG 3 cut(s) 912, 1236, 1565
Zsp2I ATGCAT 1 cut(s) 1459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.