Rroxscaffold_6G00413120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001088
Physical Location & Seq
Forward (+)
35554082 .. 35561325
7244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413120.1

Sequence Viewer

Length: 573 bp
ATGGAAAACAGTGGGTTGAGGTGTGCTCATCAAAGTCTTACTCTCCCACGAGCGTATGACATTGACTGCAGTTTACTTCTACAGTTCAAGGCTATAGATATTTCAGATGGTATTGATCGTGCCCATGTGACTTTATCACAAACCTCGCTCTATACTCGATCTTGTTGGGAAGTCGCAGCCTTTGATATCGAGAGAACCATGTTCGAAGGTGCAAGGATTTGTATACCGACCTACAACATACTTGCCGGTTGTTATGTCAACCGAAGAAGTACCGGCCCGTGCGTAATGGGCTCGTTCTTGGGGAATATCGAAGACACAATTTACTTCATGAAATTACCGGGAAACGGAGAAAATGCAGTCTTTGAGAGAGATGGAAGTGGATTGATTGATAATAAGATAAGAACTTTATCTTTGCCATCCAACGCAGTACCCTACTTCCGGCGGCGATGGAATTGCCTTTGTCATCGCTCCGACGAGAGGCCTCCGGGAGGTCTTCCGAACCATACACGAGCCTGTTCAATGCCTCCAACAATGGGAATTTCACCAATCATGTTTTTGCTTTGTGGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.15

Weight (kDa)

7.52

Isoelectric Point (pI)

61.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 223
AciI CCGC 1 cut(s) 442
AcsI RAATTY 1 cut(s) 537
AfaI GTAC 2 cut(s) 271, 429
AfiI CCNNNNNNNGG 5 cut(s) 344, 438, 477, 488, 533
AgsI TTSAA 2 cut(s) 88, 519
AluBI AGCT 1 cut(s) 569
AluI AGCT 1 cut(s) 569
Alw21I GWGCWC 1 cut(s) 28
AoxI GGCC 2 cut(s) 274, 479
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 275
AsuC2I CCSGG 2 cut(s) 339, 486
AsuHPI GGTGA 1 cut(s) 534
AsuII TTCGAA 1 cut(s) 204
BaeGI GKGCMC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 293
BauI CACGAG 2 cut(s) 48, 507
BbsI GAAGAC 2 cut(s) 318, 485
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 188
BccI CCATC 4 cut(s) 101, 365, 424, 441
BcgI CGANNNNNNTGC 2 cut(s) 435, 469
BcnI CCSGG 2 cut(s) 339, 486
BfmI CTRYAG 3 cut(s) 67, 80, 93
BisI GCNGC 2 cut(s) 177, 443
BlsI GCNGC 2 cut(s) 178, 444
Bme1390I CCNGG 2 cut(s) 339, 486
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 2 cut(s) 339, 486
BpiI GAAGAC 2 cut(s) 318, 485
BplI GAGNNNNNCTC 2 cut(s) 10, 42
Bpu14I TTCGAA 1 cut(s) 204
BpuMI CCSGG 2 cut(s) 339, 486
Bsc4I CCNNNNNNNGG 5 cut(s) 344, 438, 477, 488, 533
Bse118I RCCGGY 2 cut(s) 245, 272
BseGI GGATG 1 cut(s) 416
BseLI CCNNNNNNNGG 5 cut(s) 344, 438, 477, 488, 533
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 1 cut(s) 188
BshFI GGCC 2 cut(s) 276, 481
BsiHKAI GWGCWC 1 cut(s) 28
BsiSI CCGG 5 cut(s) 246, 273, 338, 439, 485
BslI CCNNNNNNNGG 5 cut(s) 344, 438, 477, 488, 533
BsnI GGCC 2 cut(s) 276, 481
Bsp119I TTCGAA 1 cut(s) 204
Bsp1286I GDGCHC 3 cut(s) 28, 124, 293
Bsp143I GATC 2 cut(s) 115, 158
BspACI CCGC 1 cut(s) 442
BspANI GGCC 2 cut(s) 276, 481
BspHI TCATGA 1 cut(s) 327
BspMAI CTGCAG 1 cut(s) 71
BspT104I TTCGAA 1 cut(s) 204
BsrFI RCCGGY 2 cut(s) 245, 272
BssAI RCCGGY 2 cut(s) 245, 272
BssMI GATC 2 cut(s) 115, 158
BssNAI GTATAC 1 cut(s) 224
BssSI CACGAG 2 cut(s) 48, 507
Bst1107I GTATAC 1 cut(s) 224
Bst2BI CACGAG 2 cut(s) 48, 507
Bst4CI ACNGT 2 cut(s) 11, 84
BstBI TTCGAA 1 cut(s) 204
BstENI CCTNNNNNAGG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 416
BstKTI GATC 2 cut(s) 118, 161
BstMBI GATC 2 cut(s) 115, 158
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstSCI CCNGG 2 cut(s) 337, 484
BstSFI CTRYAG 3 cut(s) 67, 80, 93
BstSLI GKGCMC 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 2 cut(s) 318, 485
BstZ17I GTATAC 1 cut(s) 224
BsuRI GGCC 2 cut(s) 276, 481
BtgZI GCGATG 2 cut(s) 449, 460
BtsCI GGATG 1 cut(s) 416
BtsIMutI CAGTG 1 cut(s) 16
CciI TCATGA 1 cut(s) 327
Cfr10I RCCGGY 2 cut(s) 245, 272
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 270, 428
CviAII CATG 4 cut(s) 125, 199, 328, 550
CviJI RGCY 7 cut(s) 92, 179, 276, 291, 481, 512, 569
CviKI_1 RGCY 7 cut(s) 92, 179, 276, 291, 481, 512, 569
CviQI GTAC 2 cut(s) 270, 428
DpnI GATC 2 cut(s) 117, 160
DpnII GATC 2 cut(s) 115, 158
Eco147I AGGCCT 1 cut(s) 481
Eco24I GRGCYC 1 cut(s) 293
Eco32I GATATC 1 cut(s) 187
EcoNI CCTNNNNNAGG 1 cut(s) 486
EcoRV GATATC 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 293
FaeI CATG 4 cut(s) 128, 202, 331, 553
FatI CATG 4 cut(s) 124, 198, 327, 549
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 177, 443
FokI GGATG 1 cut(s) 403
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 177, 443
GluI GCNGC 2 cut(s) 177, 443
HaeIII GGCC 2 cut(s) 276, 481
HapII CCGG 5 cut(s) 246, 273, 338, 439, 485
Hin1II CATG 4 cut(s) 128, 202, 331, 553
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HpaII CCGG 5 cut(s) 246, 273, 338, 439, 485
HphI GGTGA 1 cut(s) 534
Hpy166II GTNNAC 3 cut(s) 74, 224, 259
Hpy188I TCNGA 3 cut(s) 106, 472, 498
Hpy188III TCNNGA 2 cut(s) 190, 328
Hpy8I GTNNAC 3 cut(s) 74, 224, 259
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 2 cut(s) 11, 84
HpyCH4V TGCA 3 cut(s) 69, 212, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
Hsp92II CATG 4 cut(s) 128, 202, 331, 553
Kzo9I GATC 2 cut(s) 115, 158
LmnI GCTCC 2 cut(s) 473, 566
LpnPI CCDG 6 cut(s) 259, 286, 351, 452, 498, 526
Lsp1109I GCAGC 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 117, 160
MboI GATC 2 cut(s) 115, 158
MboII GAAGA 3 cut(s) 276, 323, 485
MhlI GDGCHC 3 cut(s) 28, 124, 293
MluCI AATT 4 cut(s) 318, 332, 451, 537
MmeI TCCRAC 3 cut(s) 444, 495, 551
MnlI CCTC 6 cut(s) 12, 154, 471, 482, 492, 534
MspI CCGG 5 cut(s) 246, 273, 338, 439, 485
MspR9I CCNGG 2 cut(s) 339, 486
MwoI GCNNNNNNNGC 1 cut(s) 288
NciI CCSGG 2 cut(s) 339, 486
NdeII GATC 2 cut(s) 115, 158
NlaIII CATG 4 cut(s) 128, 202, 331, 553
NmuCI GTSAC 1 cut(s) 127
NspV TTCGAA 1 cut(s) 204
PagI TCATGA 1 cut(s) 327
PceI AGGCCT 1 cut(s) 481
PfoI TCCNGGA 1 cut(s) 484
PkrI GCNGC 2 cut(s) 178, 444
PspPI GGNCC 1 cut(s) 275
PstI CTGCAG 1 cut(s) 71
RsaI GTAC 2 cut(s) 271, 429
RsaNI GTAC 2 cut(s) 270, 428
SatI GCNGC 2 cut(s) 177, 443
Sau3AI GATC 2 cut(s) 115, 158
Sau96I GGNCC 1 cut(s) 275
ScrFI CCNGG 2 cut(s) 339, 486
SduI GDGCHC 3 cut(s) 28, 124, 293
SetI ASST 6 cut(s) 23, 146, 211, 233, 493, 571
SfcI CTRYAG 3 cut(s) 67, 80, 93
SfuI TTCGAA 1 cut(s) 204
Sse9I AATT 4 cut(s) 318, 332, 451, 537
SseBI AGGCCT 1 cut(s) 481
SsiI CCGC 1 cut(s) 442
StuI AGGCCT 1 cut(s) 481
StyD4I CCNGG 2 cut(s) 337, 484
TaaI ACNGT 2 cut(s) 11, 84
TaqI TCGA 4 cut(s) 157, 189, 204, 309
TasI AATT 4 cut(s) 318, 332, 451, 537
TauI GCSGC 1 cut(s) 445
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 316, 344
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 1 cut(s) 16
XagI CCTNNNNNAGG 1 cut(s) 486
XapI RAATTY 1 cut(s) 537
XmiI GTMKAC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.