Rw7G040100

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001088
Physical Location & Seq
Forward (+)
62119227 .. 62126531
7305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040100.1

Sequence Viewer

Length: 1875 bp
ATGGATCCTCCTCAAAATCCCAATGTGGGTTCTTCTTCTTCTCGAAGACCTGAAGCGGGTTCCTCTTCTTCTCCAAGACCGAATGGGTTCTTCTTCTTCTCTTCTTTGAGCTTAACGAGATTCAGTCTCAGCGTGAAGATGGGCAACACACAATCAATCACACCAGTCTTCGGCTGCAGAATCGACCCCACAGCTCGTGTGCCCAAGAAGGACGATGAAGTTCCCCCCGAGCACGAGTTCAGTTTCAAATGGTATCGGGAGTATATTAGCCCTTCTATCCCCAGAGACAAGATCAAGTGCTCTGTCCACCCTGATGAGGTGGCCACTTTCCAGTGTAATGATTGTGTCAAATTGAAGTTACCATTCAAGGGAAGTTATCATTGCTCTCCCACTTGTTATTCTGAGGCATGGAAGAAACACAGGATGTGCCATCGTTGTGCTAAAGCTGTTGGTGAGACTTCTTCTGATAACCAACAAGCAGAAGAAGAGATGTATAGCTGGCTTGACTTTGAAGATGATCCACTCAATGAAATTCCAAAGCTGGAACGAGATGGAAAACAGTGGGTTGAGGTGTGCTCTTCAAGGTGTTATGTACCCACAGTGAATGACCTTAACTGCAGGTTGATGCTGGAATCTAAGGCTGTTGATTGTTCAACTGGTCTGGATTTGTGCCTGAGTGACATCATCATGACAGTTCCTGTTTTTTATCCGCCTCATCAGAAACCTCGCTCCATGCTTGAGTGTCGGCAGAAGCTTGGGGACTCTGATTTCAAAGCGCACACTTGCAGTGGTGTAAAATTTAGTGTGCTATCATATAATGTCCTTGGTAATCTTTATACTGATCCGTTTAGGTACTCTTACTGCCCAGAATGGGCTAGGTCTTGGGAATATCGTCAGCAGAATTTACTAAACGAGATCATTGAATATGATGCAGACATCCTCTGTCTTCAAGAGGTACAAAATAATCATCTTGAGTATTTCTTCGAACCTGAGTTGGCAAAATGTGGATATTCTGTTATATACAAGAAGAGAAGAGGATCATTTTTTGCAAGAGACGGGTTTTGCATGGATGGTTGTGCTACATTTTACCGCCGAGATGTATTCAAAGAAATCGTAAAATATGAGCGTGCGTTTGATAGCTCTGTTATGAGAGTGATAGAAGCATTGCAGCCATTGGAACCTCAACAGAGAAATAGAGCTTGTATAAGGCTGCAGAAGGACAATGTTGCACTTGTTGTTATATTAGAAAAACTGGAAAAGGGCACTTGCGATGGAATTCAACCTAGAATTTGTGTGGTACTATGTGCAAATACGCACATATCTGCAAATCCACAGTTCCCAGATGTAAAATTGTTCCAGGTTGTGGACCTGATTACTGGACTGGACAAAATTGCCAAGATGAAAATTCCTCTGTTGGTTTGTGGAGATTTCAACTCTCTTCCTCTGAGTGAGCCTCATAAGTTCATAACTGCTGGCAGAGTCGACAATCTTCCCAACGATACTGATCCATTTGGCATATGTCAGCATCTAAAGCTTCACCATTCACTTCCACTGAAAAGTGCATATGCATCTTTTTATAACTCGGATGGTATCGAGGAGGAACAACGTAGGAAGTTCAATTCTGAAAGCAGGGAGCCTTTGTTCACCCACATCACACCAAGTTTCACAGGAACCCTAGATTACCTATTCTACACAGAGGATAGTTTGACGCTTGATGGTGTGTTGGAGCTACTTGACCGTGACAATCTGGGTGTTGGTATTCCATCTCCTTTTTGGTCATCAGATCATATTGCCCTCATTGCACGGTTTGTCCTCAATTCAACCTCTCCCCAGCAACAGGGTTCACAAGCAATTCCTGCTGACTTGTGGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Exo_endo_phos zf-C6H2

Protein Analysis

624

Amino Acids

71.14

Weight (kDa)

5.83

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 270 - 596 1e-22 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1578
Acc36I ACCTGC 1 cut(s) 609
AccB7I CCANNNNNTGG 1 cut(s) 1363
AccI GTMKAC 1 cut(s) 1482
AciI CCGC 3 cut(s) 56, 710, 1090
AclWI GGATC 5 cut(s) 12, 512, 836, 1045, 1499
AcoI YGGCCR 2 cut(s) 321, 1868
AcsI RAATTY 6 cut(s) 531, 797, 901, 1275, 1287, 1404
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 4 cut(s) 594, 854, 957, 1299
AfiI CCNNNNNNNGG 8 cut(s) 26, 56, 170, 316, 368, 871, 1363, 1837
AjnI CCWGG 1 cut(s) 1356
AloI GAACNNNNNNTCC 2 cut(s) 1625, 1657
Alw21I GWGCWC 3 cut(s) 234, 302, 578
Alw26I GTCTC 4 cut(s) 131, 279, 449, 1047
AlwI GGATC 5 cut(s) 12, 512, 836, 1045, 1499
AlwNI CAGNNNCTG 1 cut(s) 698
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 2 cut(s) 321, 1868
ApeKI GCWGC 3 cut(s) 174, 1168, 1210
ApoI RAATTY 6 cut(s) 531, 797, 901, 1275, 1287, 1404
Asp700I GAANNNNTTC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 778
AspS9I GGNCC 1 cut(s) 1366
AsuHPI GGTGA 3 cut(s) 464, 1529, 1636
AsuII TTCGAA 1 cut(s) 984
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 1366
BaeGI GKGCMC 2 cut(s) 204, 1265
BalI TGGCCA 2 cut(s) 323, 1870
BamHI GGATCC 1 cut(s) 4
BauI CACGAG 2 cut(s) 195, 233
BbsI GAAGAC 3 cut(s) 52, 160, 938
Bbv12I GWGCWC 3 cut(s) 234, 302, 578
BbvI GCAGC 3 cut(s) 161, 1180, 1197
BccI CCATC 8 cut(s) 133, 438, 545, 1064, 1265, 1580, 1709, 1771
BciT130I CCWGG 1 cut(s) 1358
BcoDI GTCTC 4 cut(s) 131, 279, 449, 1047
BfaI CTAG 3 cut(s) 876, 1284, 1676
BfmI CTRYAG 3 cut(s) 175, 616, 1211
BfuAI ACCTGC 1 cut(s) 609
BisI GCNGC 3 cut(s) 175, 1169, 1211
BlsI GCNGC 3 cut(s) 176, 1170, 1212
Bme1390I CCNGG 1 cut(s) 1358
Bme18I GGWCC 1 cut(s) 1366
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 1366
BmiI GGNNCC 5 cut(s) 6, 61, 1179, 1635, 1672
BmrFI CCNGG 1 cut(s) 1358
BmsI GCATC 4 cut(s) 615, 919, 1534, 1577
BpiI GAAGAC 3 cut(s) 52, 160, 938
BplI GAGNNNNNCTC 4 cut(s) 560, 592, 1438, 1470
Bpu14I TTCGAA 1 cut(s) 984
BpuEI CTTGAG 2 cut(s) 758, 992
BsaBI GATNNNNATC 1 cut(s) 1503
BsaJI CCNNGG 1 cut(s) 823
BsaXI ACNNNNNCTCC 2 cut(s) 1625, 1655
Bsc4I CCNNNNNNNGG 8 cut(s) 26, 56, 170, 316, 368, 871, 1363, 1837
Bse1I ACTGG 6 cut(s) 164, 331, 661, 1257, 1381, 1386
Bse3DI GCAATG 3 cut(s) 379, 1163, 1797
Bse8I GATNNNNATC 1 cut(s) 1503
BseBI CCWGG 1 cut(s) 1358
BseDI CCNNGG 1 cut(s) 823
BseGI GGATG 4 cut(s) 429, 936, 1075, 1591
BseJI GATNNNNATC 1 cut(s) 1503
BseLI CCNNNNNNNGG 8 cut(s) 26, 56, 170, 316, 368, 871, 1363, 1837
BseMI GCAATG 3 cut(s) 379, 1163, 1797
BseMII CTCAG 5 cut(s) 142, 393, 665, 981, 1436
BseNI ACTGG 6 cut(s) 164, 331, 661, 1257, 1381, 1386
BseRI GAGGAG 1 cut(s) 1610
BseSI GKGCMC 2 cut(s) 204, 1265
BseXI GCAGC 3 cut(s) 161, 1180, 1197
BseYI CCCAGC 1 cut(s) 1830
BshFI GGCC 2 cut(s) 323, 1870
BsiHKAI GWGCWC 3 cut(s) 234, 302, 578
BsiHKCI CYCGRG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 8 cut(s) 26, 56, 170, 316, 368, 871, 1363, 1837
BsmAI GTCTC 4 cut(s) 131, 279, 449, 1047
BsmBI CGTCTC 1 cut(s) 1047
BsmFI GGGAC 1 cut(s) 773
BsnI GGCC 2 cut(s) 323, 1870
BsoBI CYCGRG 1 cut(s) 227
Bsp119I TTCGAA 1 cut(s) 984
Bsp1286I GDGCHC 5 cut(s) 204, 234, 302, 578, 1265
Bsp143I GATC 8 cut(s) 4, 291, 517, 841, 915, 1037, 1504, 1783
BspACI CCGC 3 cut(s) 56, 710, 1090
BspANI GGCC 2 cut(s) 323, 1870
BspCNI CTCAG 5 cut(s) 141, 394, 666, 982, 1437
BspHI TCATGA 1 cut(s) 687
BspLI GGNNCC 5 cut(s) 6, 61, 1179, 1635, 1672
BspMAI CTGCAG 3 cut(s) 179, 620, 1215
BspMI ACCTGC 1 cut(s) 609
BspPI GGATC 5 cut(s) 12, 512, 836, 1045, 1499
BspQI GCTCTTC 1 cut(s) 583
BspT104I TTCGAA 1 cut(s) 984
BsrDI GCAATG 3 cut(s) 379, 1163, 1797
BsrI ACTGG 6 cut(s) 164, 331, 661, 1257, 1381, 1386
BssECI CCNNGG 1 cut(s) 823
BssMI GATC 8 cut(s) 4, 291, 517, 841, 915, 1037, 1504, 1783
BssSI CACGAG 2 cut(s) 195, 233
BssT1I CCWWGG 1 cut(s) 823
Bst2BI CACGAG 2 cut(s) 195, 233
Bst2UI CCWGG 1 cut(s) 1358
Bst4CI ACNGT 6 cut(s) 561, 601, 694, 1335, 1739, 1806
Bst6I CTCTTC 7 cut(s) 70, 106, 480, 583, 1022, 1027, 1443
BstAPI GCANNNNNTGC 1 cut(s) 1856
BstBI TTCGAA 1 cut(s) 984
BstC8I GCNNGC 3 cut(s) 500, 1128, 1474
BstDEI CTNAG 6 cut(s) 128, 402, 636, 674, 990, 1445
BstF5I GGATG 4 cut(s) 429, 936, 1075, 1591
BstHHI GCGC 1 cut(s) 778
BstKTI GATC 8 cut(s) 7, 294, 520, 844, 918, 1040, 1507, 1786
BstMAI GTCTC 4 cut(s) 131, 279, 449, 1047
BstMBI GATC 8 cut(s) 4, 291, 517, 841, 915, 1037, 1504, 1783
BstMWI GCNNNNNNNGC 3 cut(s) 1531, 1799, 1856
BstNI CCWGG 1 cut(s) 1358
BstSCI CCNGG 1 cut(s) 1356
BstSFI CTRYAG 3 cut(s) 175, 616, 1211
BstSLI GKGCMC 2 cut(s) 204, 1265
BstV1I GCAGC 3 cut(s) 161, 1180, 1197
BstV2I GAAGAC 3 cut(s) 52, 160, 938
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 323, 1870
BtgZI GCGATG 1 cut(s) 1284
BtsCI GGATG 4 cut(s) 429, 936, 1075, 1591
BtsI GCAGTG 1 cut(s) 793
BtsIMutI CAGTG 5 cut(s) 338, 566, 606, 793, 1550
BveI ACCTGC 1 cut(s) 609
Cac8I GCNNGC 3 cut(s) 500, 1128, 1474
CaiI CAGNNNCTG 1 cut(s) 698
CciI TCATGA 1 cut(s) 687
CfoI GCGC 1 cut(s) 778
Cfr13I GGNCC 1 cut(s) 1366
CseI GACGC 1 cut(s) 1717
Csp6I GTAC 4 cut(s) 593, 853, 956, 1298
CviAII CATG 4 cut(s) 408, 688, 733, 1066
CviQI GTAC 4 cut(s) 593, 853, 956, 1298
DdeI CTNAG 6 cut(s) 128, 402, 636, 674, 990, 1445
DpnI GATC 8 cut(s) 6, 293, 519, 843, 917, 1039, 1506, 1785
DpnII GATC 8 cut(s) 4, 291, 517, 841, 915, 1037, 1504, 1783
EaeI YGGCCR 2 cut(s) 321, 1868
Eam1104I CTCTTC 7 cut(s) 70, 106, 480, 583, 1022, 1027, 1443
EarI CTCTTC 7 cut(s) 70, 106, 480, 583, 1022, 1027, 1443
EciI GGCGGA 1 cut(s) 699
Eco130I CCWWGG 1 cut(s) 823
Eco47I GGWCC 1 cut(s) 1366
Eco57I CTGAAG 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 227
EcoRI GAATTC 1 cut(s) 1275
EcoRII CCWGG 1 cut(s) 1356
EcoT14I CCWWGG 1 cut(s) 823
EcoT22I ATGCAT 1 cut(s) 1570
ErhI CCWWGG 1 cut(s) 823
Esp3I CGTCTC 1 cut(s) 1047
FaeI CATG 4 cut(s) 411, 691, 736, 1069
FaqI GGGAC 1 cut(s) 773
FatI CATG 4 cut(s) 407, 687, 732, 1065
FauI CCCGC 1 cut(s) 49
FauNDI CATATG 2 cut(s) 1517, 1564
FblI GTMKAC 1 cut(s) 1482
Fnu4HI GCNGC 3 cut(s) 175, 1169, 1211
FokI GGATG 4 cut(s) 436, 923, 1082, 1598
Fsp4HI GCNGC 3 cut(s) 175, 1169, 1211
FspBI CTAG 3 cut(s) 876, 1284, 1676
GlaI GCGC 1 cut(s) 777
GluI GCNGC 3 cut(s) 175, 1169, 1211
GsaI CCCAGC 1 cut(s) 1834
HaeIII GGCC 2 cut(s) 323, 1870
HgaI GACGC 1 cut(s) 1717
HhaI GCGC 1 cut(s) 778
Hin1II CATG 4 cut(s) 411, 691, 736, 1069
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HincII GTYRAC 1 cut(s) 1483
HindII GTYRAC 1 cut(s) 1483
HindIII AAGCTT 2 cut(s) 752, 1532
HinfI GANTC 5 cut(s) 120, 180, 632, 761, 1479
HphI GGTGA 3 cut(s) 464, 1529, 1636
Hpy166II GTNNAC 5 cut(s) 307, 1366, 1483, 1644, 1844
Hpy188I TCNGA 8 cut(s) 403, 466, 720, 766, 1446, 1585, 1624, 1783
Hpy188III TCNNGA 6 cut(s) 42, 257, 662, 688, 950, 971
Hpy8I GTNNAC 5 cut(s) 307, 1366, 1483, 1644, 1844
HpyAV CCTTC 3 cut(s) 202, 282, 1210
HpyCH4III ACNGT 6 cut(s) 561, 601, 694, 1335, 1739, 1806
HpyCH4IV ACGT 1 cut(s) 1606
HpyF10VI GCNNNNNNNGC 3 cut(s) 1531, 1799, 1856
HpyF3I CTNAG 6 cut(s) 128, 402, 636, 674, 990, 1445
HpySE526I ACGT 1 cut(s) 1606
Hsp92II CATG 4 cut(s) 411, 691, 736, 1069
HspAI GCGC 1 cut(s) 776
Kzo9I GATC 8 cut(s) 4, 291, 517, 841, 915, 1037, 1504, 1783
LguI GCTCTTC 1 cut(s) 583
LmnI GCTCC 3 cut(s) 734, 1633, 1726
Lsp1109I GCAGC 3 cut(s) 161, 1180, 1197
LweI GCATC 4 cut(s) 615, 919, 1534, 1577
MaeI CTAG 3 cut(s) 876, 1284, 1676
MaeII ACGT 1 cut(s) 1606
MaeIII GTNAC 3 cut(s) 357, 677, 1739
MalI GATC 8 cut(s) 6, 293, 519, 843, 917, 1039, 1506, 1785
MboI GATC 8 cut(s) 4, 291, 517, 841, 915, 1037, 1504, 1783
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 5 cut(s) 204, 234, 302, 578, 1265
MlsI TGGCCA 2 cut(s) 323, 1870
MluNI TGGCCA 2 cut(s) 323, 1870
MlyI GAGTC 2 cut(s) 755, 1488
MmeI TCCRAC 1 cut(s) 1704
Mox20I TGGCCA 2 cut(s) 323, 1870
Mph1103I ATGCAT 1 cut(s) 1570
MroXI GAANNNNTTC 1 cut(s) 86
MscI TGGCCA 2 cut(s) 323, 1870
MseI TTAA 2 cut(s) 113, 612
MslI CAYNNNNRTG 3 cut(s) 312, 435, 686
Msp20I TGGCCA 2 cut(s) 323, 1870
MspR9I CCNGG 1 cut(s) 1358
MvaI CCWGG 1 cut(s) 1358
MwoI GCNNNNNNNGC 3 cut(s) 1531, 1799, 1856
NdeI CATATG 2 cut(s) 1517, 1564
NdeII GATC 8 cut(s) 4, 291, 517, 841, 915, 1037, 1504, 1783
NlaIII CATG 4 cut(s) 411, 691, 736, 1069
NlaIV GGNNCC 5 cut(s) 6, 61, 1179, 1635, 1672
NmeAIII GCCGAG 1 cut(s) 1118
NmuCI GTSAC 2 cut(s) 677, 1739
NsiI ATGCAT 1 cut(s) 1570
NspV TTCGAA 1 cut(s) 984
PagI TCATGA 1 cut(s) 687
PciSI GCTCTTC 1 cut(s) 583
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 3 cut(s) 120, 180, 632
PflMI CCANNNNNTGG 1 cut(s) 1363
PkrI GCNGC 3 cut(s) 176, 1170, 1212
PleI GAGTC 2 cut(s) 755, 1487
PpsI GAGTC 2 cut(s) 755, 1487
PsiI TTATAA 1 cut(s) 1578
Psp6I CCWGG 1 cut(s) 1356
PspFI CCCAGC 1 cut(s) 1830
PspGI CCWGG 1 cut(s) 1356
PspN4I GGNNCC 5 cut(s) 6, 61, 1179, 1635, 1672
PspPI GGNCC 1 cut(s) 1366
PstI CTGCAG 3 cut(s) 179, 620, 1215
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 4 cut(s) 594, 854, 957, 1299
RsaNI GTAC 4 cut(s) 593, 853, 956, 1298
RseI CAYNNNNRTG 3 cut(s) 312, 435, 686
SalI GTCGAC 1 cut(s) 1481
SapI GCTCTTC 1 cut(s) 583
SaqAI TTAA 2 cut(s) 113, 612
SatI GCNGC 3 cut(s) 175, 1169, 1211
Sau3AI GATC 8 cut(s) 4, 291, 517, 841, 915, 1037, 1504, 1783
Sau96I GGNCC 1 cut(s) 1366
SchI GAGTC 2 cut(s) 755, 1488
ScrFI CCNGG 1 cut(s) 1358
SduI GDGCHC 5 cut(s) 204, 234, 302, 578, 1265
SfaNI GCATC 4 cut(s) 615, 919, 1534, 1577
SfcI CTRYAG 3 cut(s) 175, 616, 1211
SfuI TTCGAA 1 cut(s) 984
SinI GGWCC 1 cut(s) 1366
SmiMI CAYNNNNRTG 3 cut(s) 312, 435, 686
SmlI CTYRAG 2 cut(s) 737, 971
SmoI CTYRAG 2 cut(s) 737, 971
SsiI CCGC 3 cut(s) 56, 710, 1090
SspMI CTAG 3 cut(s) 876, 1284, 1676
StyD4I CCNGG 1 cut(s) 1356
StyI CCWWGG 1 cut(s) 823
TaaI ACNGT 6 cut(s) 561, 601, 694, 1335, 1739, 1806
TaiI ACGT 1 cut(s) 1609
TaqI TCGA 5 cut(s) 43, 183, 984, 1482, 1593
TaqII GACCGA 1 cut(s) 94
TfiI GAWTC 3 cut(s) 120, 180, 632
Tru1I TTAA 2 cut(s) 113, 612
Tru9I TTAA 2 cut(s) 113, 612
TscAI CASTG 5 cut(s) 338, 566, 606, 793, 1557
TseFI GTSAC 2 cut(s) 677, 1739
TseI GCWGC 3 cut(s) 174, 1168, 1210
Tsp45I GTSAC 2 cut(s) 677, 1739
TspDTI ATGAA 4 cut(s) 231, 543, 1415, 1453
TspGWI ACGGA 1 cut(s) 834
TspRI CASTG 5 cut(s) 338, 566, 606, 793, 1557
Van91I CCANNNNNTGG 1 cut(s) 1363
VpaK11BI GGWCC 1 cut(s) 1366
XapI RAATTY 6 cut(s) 531, 797, 901, 1275, 1287, 1404
XcmI CCANNNNNNNNNTGG 1 cut(s) 1770
XmiI GTMKAC 1 cut(s) 1482
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 3 cut(s) 876, 1284, 1676
Zsp2I ATGCAT 1 cut(s) 1570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.