Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001088

Physical Location & Seq

Genomic Coordinates Reverse (-)

50673099 .. 50677678

Gene Structure 4580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G030830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGATGGTTGTGCTACATTTTACCGCCGAGATGTATTCAAAGAAATCGTAAAATATGAGTGTGCGTTTGATAGGTCTATTATGAGAGTGATAGAAGCATTGCAGCCATTGGAACCTCAACAGAGAGATAGAGCTTGTATAAGGCTGAAGAAGGACAATGTTGCACTTGTTGTTATATTAGAAAAACTGGAAAGTGAGGGCACTTGCGATGGAATTCAACCTAGAATTTGTGTGGCAAATACACACATATCTGCAAATCCAAAGTTCCCAGATGTAAAATTGTTCCAGGTTGTGGACCTGATTACTGGACTGGACAAAATTGTCGAGATGAAAATTCCTCTGTTGGTTTGTGGAGATTTCAACTCTCTTCCTCTGAGTGAGCCTCATAAGTTGATAACTGCTGGCAGAGTCGACAATCTTCCCAACGATACTGATCCATTTGGCATATGTCACCATTCACTTTCACTGGTATGGTCATTATTATCCGTATCTCAATATTTACTCTTTAGATATATAGCATATATTTATGATATATACCTTACATTTATTTTTTATTCTAGAAACCTACCGAGGATAATTTTGCATCGAACAGATGAAGCTAGGTTATATCAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos zf-C6H2

Protein Analysis

205

Amino Acids

23.72

Weight (kDa)

6.51

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58560 AT3G58580
fragaria_vesca	FvH4_5g37360 FvH4_5g37360 FvH4_5g37650 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630
malus_domestica	MD08G1182500.v1.1 MD12G1053300.v1.1 MD14G1051700.v1.1 MD15G1368200.v1.1 MD15G1368500.v1.1
prunus_persica	Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.7G084300_v2.0.a1
pyrus_communis	pycom08g15630 pycom15g33010 pycom15g33030
rosa_chinensis	RchiOBHm_Chr3g0478881 RchiOBHm_Chr7g0227401 RchiOBHm_Chr7g0239031
rosa_laevigata	RLG00000000789 RLG00000001657 RLG00000023618
rosa_multiflora	Rmu_sc0000868.1_g000004 Rmu_sc0004831.1_g000003 Rmu_sc0005651.1_g000003 Rmu_sc0005751.1_g000015
rosa_roxburghii	Rroxscaffold_3G00221350 Rroxscaffold_3G00237900 Rroxscaffold_3G00237980 Rroxscaffold_3G00238050 Rroxscaffold_5G00332920 Rroxscaffold_6G00403000 Rroxscaffold_6G00413120 Rroxscaffold_7G00214960
rosa_rugosa	Rorug03G0168800 Rorug03G0168900 Rorug07G0324800
rosa_samantha	Rh2DG401300 Rh3AG220500 Rh3BG252400 Rh3CG249200 Rh3DG245400 Rh6AG177800 Rh7AG393200 Rh7AG479600 Rh7BG452100 Rh7CG412400 Rh7CG497100 Rh7DG464600
rosa_wichuraiana	Rw2G030830 Rw3G019830 Rw6G015170 Rw7G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AccB7I	CCANNNNNTGG	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	3 cut(s)	213, 225, 333
AcuI	CTGAAG	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	3 cut(s)	40, 218, 361
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	2 cut(s)	134, 599
AluI	AGCT	2 cut(s)	134, 599
AlwI	GGATC	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	3 cut(s)	213, 225, 333
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	287
BfaI	CTAG	3 cut(s)	222, 558, 600
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	592
BplI	GAGNNNNNCTC	2 cut(s)	367, 399
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	4 cut(s)	192, 310, 315, 471
Bse3DI	GCAATG	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	4 cut(s)	192, 310, 315, 471
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	1 cut(s)	25
BspCNI	CTCAG	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	98
BsrI	ACTGG	4 cut(s)	192, 310, 315, 471
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	433
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	295
CviJI	RGCY	5 cut(s)	106, 134, 145, 382, 599
CviKI_1	RGCY	5 cut(s)	106, 134, 145, 382, 599
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	285
FauNDI	CATATG	1 cut(s)	446
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	3 cut(s)	222, 558, 600
GluI	GCNGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	1 cut(s)	408
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	2 cut(s)	295, 412
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	2 cut(s)	325, 558
Hpy8I	GTNNAC	2 cut(s)	295, 412
HpyAV	CCTTC	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	103, 164, 254, 583
HpyF3I	CTNAG	1 cut(s)	374
Kzo9I	GATC	1 cut(s)	433
LpnPI	CCDG	9 cut(s)	173, 272, 282, 291, 296, 299, 311, 387, 452
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	3 cut(s)	222, 558, 600
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	3 cut(s)	160, 359, 410
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	6 cut(s)	213, 225, 278, 318, 333, 576
MlyI	GAGTC	1 cut(s)	417
MnlI	CCTC	6 cut(s)	126, 190, 348, 381, 393, 564
MslI	CAYNNNNRTG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
NdeI	CATATG	1 cut(s)	446
NdeII	GATC	1 cut(s)	433
NlaIV	GGNNCC	1 cut(s)	114
NmeAIII	GCCGAG	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	105
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	469
SalI	GTCGAC	1 cut(s)	410
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	1 cut(s)	592
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	469
Sse9I	AATT	6 cut(s)	213, 225, 278, 318, 333, 576
SsiI	CCGC	1 cut(s)	25
SspI	AATATT	1 cut(s)	497
SspMI	CTAG	3 cut(s)	222, 558, 600
StyD4I	CCNGG	1 cut(s)	285
TaqI	TCGA	3 cut(s)	324, 411, 586
TasI	AATT	6 cut(s)	213, 225, 278, 318, 333, 576
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	2 cut(s)	344, 609
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	1 cut(s)	471
Van91I	CCANNNNNTGG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	3 cut(s)	213, 225, 333
XbaI	TCTAGA	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	3 cut(s)	222, 558, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.