RchiOBHm_Chr7g0239031

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001088
Physical Location & Seq
Forward (+)
64513859 .. 64521815
7957 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21418

Sequence Viewer

Length: 1905 bp
ATGGATCCTCCTCCAAATCCCAATGTGGGTTCTTCTTCTTCTCGAAGACCTGATGCGGGTTCCTCTTCTTCTCCAAGACCTGAAGTGGGTTCTTCTTCTTCTTCAACAAGACCTGAAGTGGGTTCTTCTTCTTCATCTTCTTTGAGCTTAGCGAGATTCAGTCTCAGCGTGAGGATGGGCACCACACAGTCAATTACACCAGTCTTCGGCTGCAGAATCGACCCCACAGCTCGTGTGCCCAAGAAGGACGGTGAAGCTCCCCCCGAGCACGAGTTCAGTTTCAAATGGTATCGGGAGTATATTAGCCCTTCTATCCCCAGAGACAAGATCAAGTGCTCTGTCCACCCTGATGAGGTGGCCACTTTCCAGTGTAATGATTGTGTCAAATTGAAGTTACCATTCAAGGGAAGTTATCATTGCTCTCCCACTTGTTATTCTGAGGCATGGGGGAAACACAGGATGTGCCATCGTTGTGCTAAAGCTGTTGGTGAGACTTCTTCTGATAATCAACAAGCAGAAGAAGAGATGTATAGCTGGCTTGACTTTGAAGATGATCCACTCAATGAAATTCCAAAGCTGGAACGAGATGGAAAACAATGGGTTGAGGTGTGCTCTTCAAGGTGTTATGTACCCACAGTGAATGACCTTAACTGCAGGTTGATGCTGGAATCTAAGGCTGTTGATTGTTCAACTGGTCTGGATTTGTGCCTGAGTGACATCATCATGACAGTTCCTGTTCTTTATCCGCCTCATCAGAAACCTCGCTCCATGCTTGAGTGTCGGCGGAAGCTTGGGGACTCTGATCTCAAAGCGCACACTTGCAGTGGTGTAAAATTTAGTGTGCTATCATATAATGTCCTTGGTAATCTTTATACTGATCCGTATAGGTACTCTTACTGCCCAGAATGGGCTAGGTCTTGGGAATATCGTCAGCAGAATTTACTAAACGAGATCATTGAATATGATGCAGACATCCTCTGTCTTCAAGAGGTACAAAGTAATCATCTTGAGTATTTCTTCGAACCTGAGTTGGCAAAATGTGGATATTCTGTTATATACAAGAAGAGAAGAGGATCATTTTTTGTAAGAGACGGGTCTTGCATGGATGGTTGTGCTACATTTTACCGCCGAGATGTATTCAAAGAAATCGTAAAATATGAGCATGCGTTTGATAGCTCTGTTATGAGAGTGATAGAAGCATTGCAGCCATTGGAACCTCAACAGAGAAATAGAGCTTGTATAAGGCTGCAGAAGGACAATGTTGCACTTGTTGTTATATTAGAAAAACTGGAAAGTGAGGGCACTTGCGATGGAATTCAACCTAGAATTTGTGTGGCAAATACGCACATATCTGCAAATCCACAGTTCCCAGATGTAAAATTGTTCCAGGTTGTGGACCTGATTACTGGACTGGACAAAATTGCCAAGATGAAAATTCCTCTGTTGGTTTGTGGAGATTTCAACTCTCTTCCTCTGAGTGAGCCTCATAAGTTCATAACTGCTGGCAGAGTCGACAATCTTCCCAACGATACTGATCCATTTGGCATATGTCAGCATCTAAAGCTTCACCATTCACTTCCACTGAAAAGTGCATATGCATCTTTTTATAACTCGGATGGTATCGAGGAGGAACAACGTCGGAAGTTCAATTCTGAAAGCAGGGAGCCTTTGTTCACCCACTTCACACCAAGTTTCACAGGAACCCTAGATTACCTATTCTACACAGAGGATAGTTTGACGCTTGATGGTGTGTTGGAGCTACTTGACCGTGACAATCTGGGTGTTGGTATTCCATCTCTTTTTTGGTCATCAGATCATATTGCCCTCATTGCACGGTTTATCCTCAATTCAACCTCTCCCCAGCAACAGGGTTCACAAGTAATTCCTGCTGACTTGTGGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Exo_endo_phos zf-C6H2

Protein Analysis

634

Amino Acids

71.64

Weight (kDa)

5.67

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 282 - 606 2.6e-23 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1608
Acc36I ACCTGC 1 cut(s) 645
AccB1I GGYRCC 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 1393
AccI GTMKAC 1 cut(s) 1512
AciI CCGC 4 cut(s) 56, 746, 784, 1126
AclWI GGATC 5 cut(s) 12, 548, 872, 1081, 1529
AcoI YGGCCR 2 cut(s) 357, 1898
AcsI RAATTY 6 cut(s) 567, 833, 937, 1314, 1326, 1434
AcuI CTGAAG 2 cut(s) 102, 135
AfaI GTAC 3 cut(s) 630, 890, 993
AjnI CCWGG 1 cut(s) 1386
AloI GAACNNNNNNTCC 2 cut(s) 1655, 1687
Alw21I GWGCWC 3 cut(s) 270, 338, 614
Alw26I GTCTC 4 cut(s) 167, 315, 485, 1083
AlwI GGATC 5 cut(s) 12, 548, 872, 1081, 1529
AlwNI CAGNNNCTG 1 cut(s) 734
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 2 cut(s) 357, 1898
ApeKI GCWGC 3 cut(s) 210, 1204, 1246
ApoI RAATTY 6 cut(s) 567, 833, 937, 1314, 1326, 1434
AspLEI GCGC 1 cut(s) 814
AspS9I GGNCC 1 cut(s) 1396
AsuHPI GGTGA 4 cut(s) 263, 500, 1559, 1666
AsuII TTCGAA 1 cut(s) 1020
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 1396
BaeGI GKGCMC 3 cut(s) 182, 240, 1304
BalI TGGCCA 2 cut(s) 359, 1900
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 179
BauI CACGAG 2 cut(s) 231, 269
BbsI GAAGAC 3 cut(s) 52, 196, 974
Bbv12I GWGCWC 3 cut(s) 270, 338, 614
BbvI GCAGC 3 cut(s) 197, 1216, 1233
BccI CCATC 8 cut(s) 169, 474, 581, 1100, 1304, 1610, 1739, 1801
BciT130I CCWGG 1 cut(s) 1388
BcoDI GTCTC 4 cut(s) 167, 315, 485, 1083
BfaI CTAG 3 cut(s) 912, 1323, 1706
BfmI CTRYAG 3 cut(s) 211, 652, 1247
BfuAI ACCTGC 1 cut(s) 645
BisI GCNGC 3 cut(s) 211, 1205, 1247
BlpI GCTNAGC 1 cut(s) 148
BlsI GCNGC 3 cut(s) 212, 1206, 1248
Bme1390I CCNGG 1 cut(s) 1388
Bme18I GGWCC 1 cut(s) 1396
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 1396
BmiI GGNNCC 6 cut(s) 6, 61, 181, 1215, 1665, 1702
BmrFI CCNGG 1 cut(s) 1388
BmsI GCATC 5 cut(s) 43, 651, 955, 1564, 1607
BpiI GAAGAC 3 cut(s) 52, 196, 974
BplI GAGNNNNNCTC 4 cut(s) 596, 628, 1468, 1500
Bpu1102I GCTNAGC 1 cut(s) 148
Bpu14I TTCGAA 1 cut(s) 1020
BpuEI CTTGAG 2 cut(s) 794, 1028
BsaBI GATNNNNATC 1 cut(s) 1533
BsaJI CCNNGG 1 cut(s) 859
BsaXI ACNNNNNCTCC 2 cut(s) 1655, 1685
Bse1I ACTGG 6 cut(s) 200, 367, 697, 1293, 1411, 1416
Bse3DI GCAATG 3 cut(s) 415, 1199, 1827
Bse8I GATNNNNATC 1 cut(s) 1533
BseBI CCWGG 1 cut(s) 1388
BseDI CCNNGG 1 cut(s) 859
BseGI GGATG 5 cut(s) 180, 465, 972, 1111, 1621
BseJI GATNNNNATC 1 cut(s) 1533
BseMI GCAATG 3 cut(s) 415, 1199, 1827
BseMII CTCAG 5 cut(s) 178, 429, 701, 1017, 1466
BseNI ACTGG 6 cut(s) 200, 367, 697, 1293, 1411, 1416
BseRI GAGGAG 1 cut(s) 1640
BseSI GKGCMC 3 cut(s) 182, 240, 1304
BseXI GCAGC 3 cut(s) 197, 1216, 1233
BseYI CCCAGC 1 cut(s) 1860
BshFI GGCC 2 cut(s) 359, 1900
BshNI GGYRCC 1 cut(s) 179
BsiHKAI GWGCWC 3 cut(s) 270, 338, 614
BsiHKCI CYCGRG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 809
BsmAI GTCTC 4 cut(s) 167, 315, 485, 1083
BsmBI CGTCTC 1 cut(s) 1083
BsmFI GGGAC 1 cut(s) 809
BsnI GGCC 2 cut(s) 359, 1900
BsoBI CYCGRG 1 cut(s) 263
Bsp119I TTCGAA 1 cut(s) 1020
Bsp1286I GDGCHC 6 cut(s) 182, 240, 270, 338, 614, 1304
Bsp143I GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1534, 1813
Bsp1720I GCTNAGC 1 cut(s) 148
BspACI CCGC 4 cut(s) 56, 746, 784, 1126
BspANI GGCC 2 cut(s) 359, 1900
BspCNI CTCAG 5 cut(s) 177, 430, 702, 1018, 1467
BspHI TCATGA 1 cut(s) 723
BspLI GGNNCC 6 cut(s) 6, 61, 181, 1215, 1665, 1702
BspMAI CTGCAG 3 cut(s) 215, 656, 1251
BspMI ACCTGC 1 cut(s) 645
BspPI GGATC 5 cut(s) 12, 548, 872, 1081, 1529
BspQI GCTCTTC 1 cut(s) 619
BspT104I TTCGAA 1 cut(s) 1020
BspT107I GGYRCC 1 cut(s) 179
BsrDI GCAATG 3 cut(s) 415, 1199, 1827
BsrI ACTGG 6 cut(s) 200, 367, 697, 1293, 1411, 1416
BssECI CCNNGG 1 cut(s) 859
BssMI GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1534, 1813
BssSI CACGAG 2 cut(s) 231, 269
BssT1I CCWWGG 1 cut(s) 859
Bst2BI CACGAG 2 cut(s) 231, 269
Bst2UI CCWGG 1 cut(s) 1388
Bst4CI ACNGT 7 cut(s) 189, 251, 637, 730, 1365, 1769, 1836
Bst6I CTCTTC 6 cut(s) 70, 516, 619, 1058, 1063, 1473
BstBI TTCGAA 1 cut(s) 1020
BstC8I GCNNGC 3 cut(s) 536, 1164, 1504
BstDEI CTNAG 7 cut(s) 148, 164, 438, 672, 710, 1026, 1475
BstF5I GGATG 5 cut(s) 180, 465, 972, 1111, 1621
BstHHI GCGC 1 cut(s) 814
BstKTI GATC 9 cut(s) 7, 330, 556, 805, 880, 954, 1076, 1537, 1816
BstMAI GTCTC 4 cut(s) 167, 315, 485, 1083
BstMBI GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1534, 1813
BstMWI GCNNNNNNNGC 2 cut(s) 1561, 1829
BstNI CCWGG 1 cut(s) 1388
BstNSI RCATGY 1 cut(s) 1166
BstSCI CCNGG 1 cut(s) 1386
BstSFI CTRYAG 3 cut(s) 211, 652, 1247
BstSLI GKGCMC 3 cut(s) 182, 240, 1304
BstV1I GCAGC 3 cut(s) 197, 1216, 1233
BstV2I GAAGAC 3 cut(s) 52, 196, 974
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 359, 1900
BtgZI GCGATG 1 cut(s) 1323
BtsCI GGATG 5 cut(s) 180, 465, 972, 1111, 1621
BtsI GCAGTG 1 cut(s) 829
BtsIMutI CAGTG 4 cut(s) 374, 642, 829, 1580
BveI ACCTGC 1 cut(s) 645
Cac8I GCNNGC 3 cut(s) 536, 1164, 1504
CaiI CAGNNNCTG 1 cut(s) 734
CciI TCATGA 1 cut(s) 723
CfoI GCGC 1 cut(s) 814
Cfr13I GGNCC 1 cut(s) 1396
CseI GACGC 1 cut(s) 1747
Csp6I GTAC 3 cut(s) 629, 889, 992
CviAII CATG 5 cut(s) 444, 724, 769, 1102, 1163
CviQI GTAC 3 cut(s) 629, 889, 992
DdeI CTNAG 7 cut(s) 148, 164, 438, 672, 710, 1026, 1475
DpnI GATC 9 cut(s) 6, 329, 555, 804, 879, 953, 1075, 1536, 1815
DpnII GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1534, 1813
EaeI YGGCCR 2 cut(s) 357, 1898
Eam1104I CTCTTC 6 cut(s) 70, 516, 619, 1058, 1063, 1473
EarI CTCTTC 6 cut(s) 70, 516, 619, 1058, 1063, 1473
EciI GGCGGA 2 cut(s) 735, 799
Eco130I CCWWGG 1 cut(s) 859
Eco47I GGWCC 1 cut(s) 1396
Eco57I CTGAAG 2 cut(s) 102, 135
Eco88I CYCGRG 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 1314
EcoRII CCWGG 1 cut(s) 1386
EcoT14I CCWWGG 1 cut(s) 859
EcoT22I ATGCAT 1 cut(s) 1600
ErhI CCWWGG 1 cut(s) 859
Esp3I CGTCTC 1 cut(s) 1083
FaeI CATG 5 cut(s) 447, 727, 772, 1105, 1166
FaqI GGGAC 1 cut(s) 809
FatI CATG 5 cut(s) 443, 723, 768, 1101, 1162
FauI CCCGC 1 cut(s) 49
FauNDI CATATG 2 cut(s) 1547, 1594
FblI GTMKAC 1 cut(s) 1512
Fnu4HI GCNGC 3 cut(s) 211, 1205, 1247
FokI GGATG 5 cut(s) 187, 472, 959, 1118, 1628
Fsp4HI GCNGC 3 cut(s) 211, 1205, 1247
FspBI CTAG 3 cut(s) 912, 1323, 1706
GlaI GCGC 1 cut(s) 813
GluI GCNGC 3 cut(s) 211, 1205, 1247
GsaI CCCAGC 1 cut(s) 1864
HaeIII GGCC 2 cut(s) 359, 1900
HgaI GACGC 1 cut(s) 1747
HhaI GCGC 1 cut(s) 814
Hin1II CATG 5 cut(s) 447, 727, 772, 1105, 1166
Hin6I GCGC 1 cut(s) 812
HinP1I GCGC 1 cut(s) 812
HincII GTYRAC 1 cut(s) 1513
HindII GTYRAC 1 cut(s) 1513
HindIII AAGCTT 2 cut(s) 788, 1562
HinfI GANTC 5 cut(s) 156, 216, 668, 797, 1509
HphI GGTGA 4 cut(s) 263, 500, 1559, 1666
Hpy166II GTNNAC 5 cut(s) 343, 1396, 1513, 1674, 1874
Hpy188I TCNGA 9 cut(s) 439, 502, 756, 802, 1476, 1615, 1641, 1654, 1813
Hpy188III TCNNGA 6 cut(s) 42, 293, 698, 724, 986, 1007
Hpy8I GTNNAC 5 cut(s) 343, 1396, 1513, 1674, 1874
Hpy99I CGWCG 1 cut(s) 1641
HpyAV CCTTC 3 cut(s) 238, 318, 1246
HpyCH4III ACNGT 7 cut(s) 189, 251, 637, 730, 1365, 1769, 1836
HpyCH4IV ACGT 1 cut(s) 1636
HpyF10VI GCNNNNNNNGC 2 cut(s) 1561, 1829
HpyF3I CTNAG 7 cut(s) 148, 164, 438, 672, 710, 1026, 1475
HpySE526I ACGT 1 cut(s) 1636
Hsp92II CATG 5 cut(s) 447, 727, 772, 1105, 1166
HspAI GCGC 1 cut(s) 812
Kzo9I GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1534, 1813
LguI GCTCTTC 1 cut(s) 619
LmnI GCTCC 4 cut(s) 262, 770, 1663, 1756
Lsp1109I GCAGC 3 cut(s) 197, 1216, 1233
LweI GCATC 5 cut(s) 43, 651, 955, 1564, 1607
MaeI CTAG 3 cut(s) 912, 1323, 1706
MaeII ACGT 1 cut(s) 1636
MaeIII GTNAC 3 cut(s) 393, 713, 1769
MalI GATC 9 cut(s) 6, 329, 555, 804, 879, 953, 1075, 1536, 1815
MboI GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1534, 1813
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 6 cut(s) 182, 240, 270, 338, 614, 1304
MlsI TGGCCA 2 cut(s) 359, 1900
MluNI TGGCCA 2 cut(s) 359, 1900
MlyI GAGTC 2 cut(s) 791, 1518
MmeI TCCRAC 2 cut(s) 1619, 1734
Mox20I TGGCCA 2 cut(s) 359, 1900
Mph1103I ATGCAT 1 cut(s) 1600
MscI TGGCCA 2 cut(s) 359, 1900
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 3 cut(s) 348, 471, 722
Msp20I TGGCCA 2 cut(s) 359, 1900
MspR9I CCNGG 1 cut(s) 1388
MvaI CCWGG 1 cut(s) 1388
MwoI GCNNNNNNNGC 2 cut(s) 1561, 1829
NdeI CATATG 2 cut(s) 1547, 1594
NdeII GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1534, 1813
NlaIII CATG 5 cut(s) 447, 727, 772, 1105, 1166
NlaIV GGNNCC 6 cut(s) 6, 61, 181, 1215, 1665, 1702
NmeAIII GCCGAG 1 cut(s) 1154
NmuCI GTSAC 2 cut(s) 713, 1769
NsiI ATGCAT 1 cut(s) 1600
NspI RCATGY 1 cut(s) 1166
NspV TTCGAA 1 cut(s) 1020
PaeI GCATGC 1 cut(s) 1166
PagI TCATGA 1 cut(s) 723
PciSI GCTCTTC 1 cut(s) 619
PfeI GAWTC 3 cut(s) 156, 216, 668
PflMI CCANNNNNTGG 1 cut(s) 1393
PkrI GCNGC 3 cut(s) 212, 1206, 1248
PleI GAGTC 2 cut(s) 791, 1517
PpsI GAGTC 2 cut(s) 791, 1517
PsiI TTATAA 1 cut(s) 1608
Psp6I CCWGG 1 cut(s) 1386
PspFI CCCAGC 1 cut(s) 1860
PspGI CCWGG 1 cut(s) 1386
PspN4I GGNNCC 6 cut(s) 6, 61, 181, 1215, 1665, 1702
PspPI GGNCC 1 cut(s) 1396
PstI CTGCAG 3 cut(s) 215, 656, 1251
PstNI CAGNNNCTG 1 cut(s) 734
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 3 cut(s) 630, 890, 993
RsaNI GTAC 3 cut(s) 629, 889, 992
RseI CAYNNNNRTG 3 cut(s) 348, 471, 722
SalI GTCGAC 1 cut(s) 1511
SapI GCTCTTC 1 cut(s) 619
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 3 cut(s) 211, 1205, 1247
Sau3AI GATC 9 cut(s) 4, 327, 553, 802, 877, 951, 1073, 1534, 1813
Sau96I GGNCC 1 cut(s) 1396
SchI GAGTC 2 cut(s) 791, 1518
ScrFI CCNGG 1 cut(s) 1388
SduI GDGCHC 6 cut(s) 182, 240, 270, 338, 614, 1304
SfaNI GCATC 5 cut(s) 43, 651, 955, 1564, 1607
SfcI CTRYAG 3 cut(s) 211, 652, 1247
SfuI TTCGAA 1 cut(s) 1020
SinI GGWCC 1 cut(s) 1396
SmiMI CAYNNNNRTG 3 cut(s) 348, 471, 722
SmlI CTYRAG 2 cut(s) 773, 1007
SmoI CTYRAG 2 cut(s) 773, 1007
SphI GCATGC 1 cut(s) 1166
SsiI CCGC 4 cut(s) 56, 746, 784, 1126
SspMI CTAG 3 cut(s) 912, 1323, 1706
StyD4I CCNGG 1 cut(s) 1386
StyI CCWWGG 1 cut(s) 859
TaaI ACNGT 7 cut(s) 189, 251, 637, 730, 1365, 1769, 1836
TaiI ACGT 1 cut(s) 1639
TaqI TCGA 5 cut(s) 43, 219, 1020, 1512, 1623
TfiI GAWTC 3 cut(s) 156, 216, 668
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 4 cut(s) 374, 642, 829, 1587
TseFI GTSAC 2 cut(s) 713, 1769
TseI GCWGC 3 cut(s) 210, 1204, 1246
Tsp45I GTSAC 2 cut(s) 713, 1769
TspDTI ATGAA 4 cut(s) 123, 579, 1445, 1483
TspGWI ACGGA 1 cut(s) 870
TspRI CASTG 4 cut(s) 374, 642, 829, 1587
Van91I CCANNNNNTGG 1 cut(s) 1393
VpaK11BI GGWCC 1 cut(s) 1396
XapI RAATTY 6 cut(s) 567, 833, 937, 1314, 1326, 1434
XceI RCATGY 1 cut(s) 1166
XcmI CCANNNNNNNNNTGG 1 cut(s) 1800
XmiI GTMKAC 1 cut(s) 1512
XspI CTAG 3 cut(s) 912, 1323, 1706
Zsp2I ATGCAT 1 cut(s) 1600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.