Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001088

Physical Location & Seq

Genomic Coordinates Forward (+)

53125861 .. 53164686

Gene Structure 38826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG452100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGATCCTCCTCAAAATCCCAATGTGGGTTCTTCTTCTTCTCGAAGACCTGATGTGGGTTCCTCTTCTTCTCCAAGACCTGAAGTGGGTTCTTCTTCTTCTTCAACAAGACCTGAAGTGGGTTCTTCTTCTTCATTTTCTTTGAGCTTACCGAGATTCAGTCTCAACGTGAGGATGGGCACCACACAATCAATTACACCAGTCTTCGGCTGCAGAATCGACCCTACAGCTCGTGTGCCCAAGAAGGACGATGAAGTTCCCCCCGAGCACGAGTTCAGTTTCAAATGGTATCGGGAGTATATTAGCCCTTCTATCCCCAGAGACAAGATCAAGTGCTCTGTCCACCCTGATGAGGTGGCCACTTTCCGGTGTAATGATTGTGTCAAATTGAAGTTACCATTCAAGGGAAGTTATCATTGTTCTCCCACTTGTTATTCTGCGGCATGGGGGAAACACAGGATGTGCCATCGTTGCGCTAAAGCTGTTGGTGAGACTTCTTCTGATAATCAACAAGCAGAAGAAGAGATGTATAGCTGGCTTGACTTTGAAGATGATCCACTCAATGAAATTCCAAAGCTGGAACGAGATGGAAAACAATGGGTTGAGGTGTGCTCTTCAAGGTGTTATGTACCCACAGTGAATGACCTTAACTGCAGGTTGATGCTGGAATCTAAGGCTGTTGATTGTTCAACTGGTCTGGATTTGTGCCTGAGTGACATCATCATGACGGTTCCTGTTCTTTATCCGCCTCATCAGAAACCTCGCTCCATGCTTGAGTGTCGGCGGAAGCTTGGGGACTCTGATCTCAAAGCGCACACTTCCAGTGGTGTAAAATTTAGTGTGCTATCATATAATGTCCTTGGTAATCTTTATACTGATCCGTTTAGGTACTCTTACTGCCCAGAATGGGCTAGGTCTTGGGAATATCGTCAGCAGAATTTACTAAACGAGATCATTGAATATGATGCAGACATCCTCTGTCTTCAAGAGGTACAAAGTAATCATCTTGAGTATTTCTTCGAACCTGAGTTGGCAAAATGTGGATATTCTGTTATATACAAGAAGAGAAGAGGATCGGTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos zf-C6H2

Protein Analysis

361

Amino Acids

41.06

Weight (kDa)

6.47

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	282 - 347	4.9e-08	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58560 AT3G58580
fragaria_vesca	FvH4_5g37360 FvH4_5g37360 FvH4_5g37650 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630
malus_domestica	MD08G1182500.v1.1 MD12G1053300.v1.1 MD14G1051700.v1.1 MD15G1368200.v1.1 MD15G1368500.v1.1
prunus_persica	Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.7G084300_v2.0.a1
pyrus_communis	pycom08g15630 pycom15g33010 pycom15g33030
rosa_chinensis	RchiOBHm_Chr3g0478881 RchiOBHm_Chr7g0227401 RchiOBHm_Chr7g0239031
rosa_laevigata	RLG00000000789 RLG00000001657 RLG00000023618
rosa_multiflora	Rmu_sc0000868.1_g000004 Rmu_sc0004831.1_g000003 Rmu_sc0005651.1_g000003 Rmu_sc0005751.1_g000015
rosa_roxburghii	Rroxscaffold_3G00221350 Rroxscaffold_3G00237900 Rroxscaffold_3G00237980 Rroxscaffold_3G00238050 Rroxscaffold_5G00332920 Rroxscaffold_6G00403000 Rroxscaffold_6G00413120 Rroxscaffold_7G00214960
rosa_rugosa	Rorug03G0168800 Rorug03G0168900 Rorug07G0324800
rosa_samantha	Rh2DG401300 Rh3AG220500 Rh3BG252400 Rh3CG249200 Rh3DG245400 Rh6AG177800 Rh7AG393200 Rh7AG479600 Rh7BG452100 Rh7CG412400 Rh7CG497100 Rh7DG464600
rosa_wichuraiana	Rw2G030830 Rw3G019830 Rw6G015170 Rw7G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	645
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	3 cut(s)	440, 746, 784
AclWI	GGATC	4 cut(s)	12, 548, 872, 1081
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	3 cut(s)	567, 833, 937
AcuI	CTGAAG	2 cut(s)	102, 135
AfaI	GTAC	3 cut(s)	630, 890, 993
AfiI	CCNNNNNNNGG	9 cut(s)	26, 56, 86, 119, 206, 352, 366, 404, 907
AgsI	TTSAA	9 cut(s)	105, 283, 391, 403, 548, 618, 690, 959, 986
AluBI	AGCT	6 cut(s)	147, 230, 482, 534, 577, 790
AluI	AGCT	6 cut(s)	147, 230, 482, 534, 577, 790
Alw21I	GWGCWC	3 cut(s)	270, 338, 614
Alw26I	GTCTC	3 cut(s)	167, 315, 485
AlwI	GGATC	4 cut(s)	12, 548, 872, 1081
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	210
ApoI	RAATTY	3 cut(s)	567, 833, 937
AspLEI	GCGC	2 cut(s)	476, 814
AsuHPI	GGTGA	1 cut(s)	500
AsuII	TTCGAA	1 cut(s)	1020
AvaI	CYCGRG	1 cut(s)	263
BaeGI	GKGCMC	2 cut(s)	182, 240
BalI	TGGCCA	1 cut(s)	359
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	179
BauI	CACGAG	2 cut(s)	231, 269
BbsI	GAAGAC	3 cut(s)	52, 196, 974
Bbv12I	GWGCWC	3 cut(s)	270, 338, 614
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	3 cut(s)	169, 474, 581
BcoDI	GTCTC	3 cut(s)	167, 315, 485
BfaI	CTAG	1 cut(s)	912
BfmI	CTRYAG	3 cut(s)	211, 225, 652
BfuAI	ACCTGC	1 cut(s)	645
BisI	GCNGC	2 cut(s)	211, 441
BlsI	GCNGC	2 cut(s)	212, 442
BmeT110I	CYCGRG	1 cut(s)	263
BmiI	GGNNCC	4 cut(s)	6, 61, 181, 732
BmsI	GCATC	2 cut(s)	651, 955
BpiI	GAAGAC	3 cut(s)	52, 196, 974
BplI	GAGNNNNNCTC	2 cut(s)	596, 628
Bpu14I	TTCGAA	1 cut(s)	1020
BpuEI	CTTGAG	2 cut(s)	794, 1028
BsaJI	CCNNGG	1 cut(s)	859
BsaWI	WCCGGW	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	9 cut(s)	26, 56, 86, 119, 206, 352, 366, 404, 907
Bse1I	ACTGG	3 cut(s)	200, 697, 822
BseDI	CCNNGG	1 cut(s)	859
BseGI	GGATG	3 cut(s)	180, 465, 972
BseLI	CCNNNNNNNGG	9 cut(s)	26, 56, 86, 119, 206, 352, 366, 404, 907
BseMII	CTCAG	2 cut(s)	701, 1017
BseNI	ACTGG	3 cut(s)	200, 697, 822
BseSI	GKGCMC	2 cut(s)	182, 240
BseXI	GCAGC	1 cut(s)	197
BshFI	GGCC	1 cut(s)	359
BshNI	GGYRCC	1 cut(s)	179
BsiHKAI	GWGCWC	3 cut(s)	270, 338, 614
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	367
BslFI	GGGAC	1 cut(s)	809
BslI	CCNNNNNNNGG	9 cut(s)	26, 56, 86, 119, 206, 352, 366, 404, 907
BsmAI	GTCTC	3 cut(s)	167, 315, 485
BsmFI	GGGAC	1 cut(s)	809
BsnI	GGCC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	263
Bsp119I	TTCGAA	1 cut(s)	1020
Bsp1286I	GDGCHC	5 cut(s)	182, 240, 270, 338, 614
Bsp143I	GATC	7 cut(s)	4, 327, 553, 802, 877, 951, 1073
BspACI	CCGC	3 cut(s)	440, 746, 784
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	2 cut(s)	702, 1018
BspHI	TCATGA	1 cut(s)	723
BspLI	GGNNCC	4 cut(s)	6, 61, 181, 732
BspMAI	CTGCAG	2 cut(s)	215, 656
BspMI	ACCTGC	1 cut(s)	645
BspPI	GGATC	4 cut(s)	12, 548, 872, 1081
BspQI	GCTCTTC	1 cut(s)	619
BspT104I	TTCGAA	1 cut(s)	1020
BspT107I	GGYRCC	1 cut(s)	179
BsrI	ACTGG	3 cut(s)	200, 697, 822
BssECI	CCNNGG	1 cut(s)	859
BssMI	GATC	7 cut(s)	4, 327, 553, 802, 877, 951, 1073
BssSI	CACGAG	2 cut(s)	231, 269
BssT1I	CCWWGG	1 cut(s)	859
Bst2BI	CACGAG	2 cut(s)	231, 269
Bst4CI	ACNGT	2 cut(s)	637, 730
Bst6I	CTCTTC	5 cut(s)	70, 516, 619, 1058, 1063
BstBI	TTCGAA	1 cut(s)	1020
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	3 cut(s)	672, 710, 1026
BstF5I	GGATG	3 cut(s)	180, 465, 972
BstHHI	GCGC	2 cut(s)	476, 814
BstKTI	GATC	7 cut(s)	7, 330, 556, 805, 880, 954, 1076
BstMAI	GTCTC	3 cut(s)	167, 315, 485
BstMBI	GATC	7 cut(s)	4, 327, 553, 802, 877, 951, 1073
BstMWI	GCNNNNNNNGC	1 cut(s)	471
BstSFI	CTRYAG	3 cut(s)	211, 225, 652
BstSLI	GKGCMC	2 cut(s)	182, 240
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	3 cut(s)	52, 196, 974
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	359
BtsCI	GGATG	3 cut(s)	180, 465, 972
BtsIMutI	CAGTG	2 cut(s)	642, 829
BveI	ACCTGC	1 cut(s)	645
Cac8I	GCNNGC	1 cut(s)	536
CciI	TCATGA	1 cut(s)	723
CfoI	GCGC	2 cut(s)	476, 814
Csp6I	GTAC	3 cut(s)	629, 889, 992
CviAII	CATG	3 cut(s)	444, 724, 769
CviQI	GTAC	3 cut(s)	629, 889, 992
DdeI	CTNAG	3 cut(s)	672, 710, 1026
DpnI	GATC	7 cut(s)	6, 329, 555, 804, 879, 953, 1075
DpnII	GATC	7 cut(s)	4, 327, 553, 802, 877, 951, 1073
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	5 cut(s)	70, 516, 619, 1058, 1063
EarI	CTCTTC	5 cut(s)	70, 516, 619, 1058, 1063
EciI	GGCGGA	2 cut(s)	735, 799
Eco130I	CCWWGG	1 cut(s)	859
Eco57I	CTGAAG	2 cut(s)	102, 135
Eco88I	CYCGRG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	859
FaeI	CATG	3 cut(s)	447, 727, 772
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	3 cut(s)	443, 723, 768
Fnu4HI	GCNGC	2 cut(s)	211, 441
FokI	GGATG	3 cut(s)	187, 472, 959
Fsp4HI	GCNGC	2 cut(s)	211, 441
FspBI	CTAG	1 cut(s)	912
GlaI	GCGC	2 cut(s)	475, 813
GluI	GCNGC	2 cut(s)	211, 441
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	1 cut(s)	367
HhaI	GCGC	2 cut(s)	476, 814
Hin1II	CATG	3 cut(s)	447, 727, 772
Hin6I	GCGC	2 cut(s)	474, 812
HinP1I	GCGC	2 cut(s)	474, 812
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	4 cut(s)	156, 216, 668, 797
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	3 cut(s)	502, 756, 802
Hpy188III	TCNNGA	6 cut(s)	42, 293, 698, 724, 986, 1007
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	2 cut(s)	238, 318
HpyCH4III	ACNGT	2 cut(s)	637, 730
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	3 cut(s)	213, 654, 968
HpyF10VI	GCNNNNNNNGC	1 cut(s)	471
HpyF3I	CTNAG	3 cut(s)	672, 710, 1026
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	447, 727, 772
HspAI	GCGC	2 cut(s)	474, 812
Kzo9I	GATC	7 cut(s)	4, 327, 553, 802, 877, 951, 1073
LguI	GCTCTTC	1 cut(s)	619
LmnI	GCTCC	1 cut(s)	770
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	2 cut(s)	651, 955
MaeI	CTAG	1 cut(s)	912
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	393, 713
MalI	GATC	7 cut(s)	6, 329, 555, 804, 879, 953, 1075
MboI	GATC	7 cut(s)	4, 327, 553, 802, 877, 951, 1073
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	5 cut(s)	182, 240, 270, 338, 614
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	5 cut(s)	192, 386, 567, 833, 937
MluNI	TGGCCA	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	791
Mox20I	TGGCCA	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	1 cut(s)	648
MslI	CAYNNNNRTG	2 cut(s)	348, 722
Msp20I	TGGCCA	1 cut(s)	359
MspI	CCGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	1 cut(s)	471
NdeII	GATC	7 cut(s)	4, 327, 553, 802, 877, 951, 1073
NlaIII	CATG	3 cut(s)	447, 727, 772
NlaIV	GGNNCC	4 cut(s)	6, 61, 181, 732
NmuCI	GTSAC	1 cut(s)	713
NspV	TTCGAA	1 cut(s)	1020
PagI	TCATGA	1 cut(s)	723
PciSI	GCTCTTC	1 cut(s)	619
PfeI	GAWTC	3 cut(s)	156, 216, 668
PkrI	GCNGC	2 cut(s)	212, 442
PleI	GAGTC	1 cut(s)	791
PpsI	GAGTC	1 cut(s)	791
PspN4I	GGNNCC	4 cut(s)	6, 61, 181, 732
PstI	CTGCAG	2 cut(s)	215, 656
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	3 cut(s)	630, 890, 993
RsaNI	GTAC	3 cut(s)	629, 889, 992
RseI	CAYNNNNRTG	2 cut(s)	348, 722
SapI	GCTCTTC	1 cut(s)	619
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	2 cut(s)	211, 441
Sau3AI	GATC	7 cut(s)	4, 327, 553, 802, 877, 951, 1073
SchI	GAGTC	1 cut(s)	791
SduI	GDGCHC	5 cut(s)	182, 240, 270, 338, 614
SfaNI	GCATC	2 cut(s)	651, 955
SfcI	CTRYAG	3 cut(s)	211, 225, 652
SfuI	TTCGAA	1 cut(s)	1020
SmiMI	CAYNNNNRTG	2 cut(s)	348, 722
SmlI	CTYRAG	2 cut(s)	773, 1007
SmoI	CTYRAG	2 cut(s)	773, 1007
Sse9I	AATT	5 cut(s)	192, 386, 567, 833, 937
SsiI	CCGC	3 cut(s)	440, 746, 784
SspMI	CTAG	1 cut(s)	912
StyI	CCWWGG	1 cut(s)	859
TaaI	ACNGT	2 cut(s)	637, 730
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	3 cut(s)	43, 219, 1020
TasI	AATT	5 cut(s)	192, 386, 567, 833, 937
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	3 cut(s)	156, 216, 668
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	2 cut(s)	642, 829
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	3 cut(s)	123, 267, 579
TspGWI	ACGGA	1 cut(s)	870
TspRI	CASTG	2 cut(s)	642, 829
XapI	RAATTY	3 cut(s)	567, 833, 937
XspI	CTAG	1 cut(s)	912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.