Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001088

Physical Location & Seq

Genomic Coordinates Forward (+)

18879322 .. 18884309

Gene Structure 4988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001657

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGATCCTCCTCAAAATCCCAATGAGGGTTCTTCTTCTTCTTCTTGTTCTTCTCGAAGACCTGAGGTGGGTTCCTCTTCTTCTCCAAGGCCTGATGTGGGTTCTTCTTCTTCTTCTCCAAGACCTGAATCTCATCGTGATGATGGGCACTACACATTCAATTACACCAGTCTTCGGCTGCAGAAGTGCAGAATCGACCCTACAGCTCGTGTGCCCAAGAAGGACGATGAAGTCCCCCCCGAGCACGAGTTCAGTTTCAAATGGTATCGGGAGTATATTAGCCCTTCTATCCCCAGAGACAAGATCAAGTGCTCTGTCCACCCTGATGAGGTGGCCACTTTCCGGTGTAATGATTGTGTCAAATTGAAGTTACAATTCAAGGGAAGTTATCATTGCTCTCCCACTTGTTATTCTGAGGCATGGGAGAAACACAGGATGTGCCATCGTTGTGCTAAAGCTGTTGGTGAGACTTCTTCTGATAATCAACAAGCCGAAGAAGAGATGTATAGCTGGCTTGACTTTGAAGATGATCCACTCAATGAAATGGTGAATGACCTTAACTGCAGGTTGATGCTGGAATCTAAGGCTGTTGATTGTTCAACTGGTCTGGATTTGTGCCTGAGTGACATCATCATGACGGTTCCTGTTCTTTATCCGCCTCATCAGAACCCTCGCTCCATGCTTGAGTGTCGGTGGAAGCTTGGGGACTCTGATCTCAAAGCGCACACTTCCAGTGGTGTAAAATTTAGTGTGCTATCATATAATGTCCTTGGTAATCTTTATACTGATCCGTTTAGGTACTCTTACTGCCCAGAATGGGCTAGGTCTTGGGAATATTGTCAGCAGAATTTAGTAAATGAGATCATTGAATACGATGCAGACATCCTCTGTCTTCAAGAGGTACAAAGTAATCATCTTGAGTATTTCTTCGAACCTGAGTTGGCAAAATATGGATTTTCTGTTATATACAAGAAGAGAAGAGGATCATTTTTTGCAAGAGATGGGTTTTGCATGGATGGTTGTTGTGCGTTTGATAGCTCTATTATGAGAGTGATAGAAGCATTGCAGCCATTGGAACCTCAACAGAGAGATAGAGCTTGTATAAGGCTGAAGAAGGACAATGTTGCACTTGTTGTTATATTAGAAAAACTGGAAAGTGAGGGCACTTGCGATGGAATTCAACCTAGAATTTGTGTGGCAAATACGCACATATCTGCAAATCCAAAGTTCCCAGATGTAAAATTGTTCCAGGTGCAGTTTAAAACTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos zf-C6H2

Protein Analysis

424

Amino Acids

48.47

Weight (kDa)

5.57

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	252 - 324	3.1e-08	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58560 AT3G58580
fragaria_vesca	FvH4_5g37360 FvH4_5g37360 FvH4_5g37650 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630 FvH4_6g21630
malus_domestica	MD08G1182500.v1.1 MD12G1053300.v1.1 MD14G1051700.v1.1 MD15G1368200.v1.1 MD15G1368500.v1.1
prunus_persica	Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.1G516400_v2.0.a1 Prupe.7G084300_v2.0.a1
pyrus_communis	pycom08g15630 pycom15g33010 pycom15g33030
rosa_chinensis	RchiOBHm_Chr3g0478881 RchiOBHm_Chr7g0227401 RchiOBHm_Chr7g0239031
rosa_laevigata	RLG00000000789 RLG00000001657 RLG00000023618
rosa_multiflora	Rmu_sc0000868.1_g000004 Rmu_sc0004831.1_g000003 Rmu_sc0005651.1_g000003 Rmu_sc0005751.1_g000015
rosa_roxburghii	Rroxscaffold_3G00221350 Rroxscaffold_3G00237900 Rroxscaffold_3G00237980 Rroxscaffold_3G00238050 Rroxscaffold_5G00332920 Rroxscaffold_6G00403000 Rroxscaffold_6G00413120 Rroxscaffold_7G00214960
rosa_rugosa	Rorug03G0168800 Rorug03G0168900 Rorug07G0324800
rosa_samantha	Rh2DG401300 Rh3AG220500 Rh3BG252400 Rh3CG249200 Rh3DG245400 Rh6AG177800 Rh7AG393200 Rh7AG479600 Rh7BG452100 Rh7CG412400 Rh7CG497100 Rh7DG464600
rosa_wichuraiana	Rw2G030830 Rw3G019830 Rw6G015170 Rw7G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
Acc36I	ACCTGC	1 cut(s)	555
AciI	CCGC	1 cut(s)	656
AclWI	GGATC	4 cut(s)	12, 524, 782, 991
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	4 cut(s)	743, 847, 1176, 1188
AcuI	CTGAAG	1 cut(s)	1130
AfaI	GTAC	2 cut(s)	800, 903
AfiI	CCNNNNNNNGG	7 cut(s)	26, 68, 98, 174, 328, 342, 817
AgsI	TTSAA	9 cut(s)	160, 259, 367, 379, 524, 600, 869, 896, 1181
AjnI	CCWGG	1 cut(s)	1248
AloI	GAACNNNNNNTCC	2 cut(s)	659, 691
AluBI	AGCT	6 cut(s)	206, 458, 510, 700, 1038, 1097
AluI	AGCT	6 cut(s)	206, 458, 510, 700, 1038, 1097
Alw21I	GWGCWC	2 cut(s)	246, 314
Alw26I	GTCTC	2 cut(s)	291, 461
AlwI	GGATC	4 cut(s)	12, 524, 782, 991
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	2 cut(s)	89, 333
ApeKI	GCWGC	2 cut(s)	178, 1066
ApoI	RAATTY	4 cut(s)	743, 847, 1176, 1188
AspLEI	GCGC	1 cut(s)	724
AsuHPI	GGTGA	2 cut(s)	476, 559
AsuII	TTCGAA	1 cut(s)	930
AvaI	CYCGRG	1 cut(s)	239
AxyI	CCTNAGG	1 cut(s)	63
BaeGI	GKGCMC	3 cut(s)	150, 216, 1166
BalI	TGGCCA	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	4
BauI	CACGAG	2 cut(s)	207, 245
BbsI	GAAGAC	3 cut(s)	64, 164, 884
Bbv12I	GWGCWC	2 cut(s)	246, 314
BbvI	GCAGC	2 cut(s)	165, 1078
BccI	CCATC	5 cut(s)	137, 450, 995, 1010, 1166
BciT130I	CCWGG	1 cut(s)	1250
BcoDI	GTCTC	2 cut(s)	291, 461
BfaI	CTAG	2 cut(s)	822, 1185
BfmI	CTRYAG	3 cut(s)	179, 201, 562
BfuAI	ACCTGC	1 cut(s)	555
BisI	GCNGC	2 cut(s)	179, 1067
BlsI	GCNGC	2 cut(s)	180, 1068
Bme1390I	CCNGG	1 cut(s)	1250
BmeT110I	CYCGRG	1 cut(s)	239
BmiI	GGNNCC	4 cut(s)	6, 73, 642, 1077
BmrFI	CCNGG	1 cut(s)	1250
BmsI	GCATC	2 cut(s)	561, 865
BpiI	GAAGAC	3 cut(s)	64, 164, 884
Bpu14I	TTCGAA	1 cut(s)	930
BpuEI	CTTGAG	2 cut(s)	704, 938
BsaJI	CCNNGG	2 cut(s)	86, 769
BsaWI	WCCGGW	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	7 cut(s)	26, 68, 98, 174, 328, 342, 817
Bse1I	ACTGG	4 cut(s)	168, 607, 732, 1155
Bse21I	CCTNAGG	1 cut(s)	63
Bse3DI	GCAATG	2 cut(s)	391, 1061
BseBI	CCWGG	1 cut(s)	1250
BseDI	CCNNGG	2 cut(s)	86, 769
BseGI	GGATG	3 cut(s)	441, 882, 1021
BseLI	CCNNNNNNNGG	7 cut(s)	26, 68, 98, 174, 328, 342, 817
BseMI	GCAATG	2 cut(s)	391, 1061
BseMII	CTCAG	4 cut(s)	54, 405, 611, 927
BseNI	ACTGG	4 cut(s)	168, 607, 732, 1155
BseSI	GKGCMC	3 cut(s)	150, 216, 1166
BseXI	GCAGC	2 cut(s)	165, 1078
BsgI	GTGCAG	1 cut(s)	208
BshFI	GGCC	2 cut(s)	91, 335
BsiHKAI	GWGCWC	2 cut(s)	246, 314
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	343
BslFI	GGGAC	2 cut(s)	218, 719
BslI	CCNNNNNNNGG	7 cut(s)	26, 68, 98, 174, 328, 342, 817
BsmAI	GTCTC	2 cut(s)	291, 461
BsmFI	GGGAC	2 cut(s)	218, 719
BsnI	GGCC	2 cut(s)	91, 335
BsoBI	CYCGRG	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	930
Bsp1286I	GDGCHC	5 cut(s)	150, 216, 246, 314, 1166
Bsp143I	GATC	7 cut(s)	4, 303, 529, 712, 787, 861, 983
BspACI	CCGC	1 cut(s)	656
BspANI	GGCC	2 cut(s)	91, 335
BspCNI	CTCAG	4 cut(s)	55, 406, 612, 928
BspHI	TCATGA	1 cut(s)	633
BspLI	GGNNCC	4 cut(s)	6, 73, 642, 1077
BspMAI	CTGCAG	2 cut(s)	183, 566
BspMI	ACCTGC	1 cut(s)	555
BspPI	GGATC	4 cut(s)	12, 524, 782, 991
BspT104I	TTCGAA	1 cut(s)	930
BsrDI	GCAATG	2 cut(s)	391, 1061
BsrI	ACTGG	4 cut(s)	168, 607, 732, 1155
BssECI	CCNNGG	2 cut(s)	86, 769
BssMI	GATC	7 cut(s)	4, 303, 529, 712, 787, 861, 983
BssSI	CACGAG	2 cut(s)	207, 245
BssT1I	CCWWGG	2 cut(s)	86, 769
Bst2BI	CACGAG	2 cut(s)	207, 245
Bst2UI	CCWGG	1 cut(s)	1250
Bst4CI	ACNGT	1 cut(s)	640
Bst6I	CTCTTC	4 cut(s)	82, 492, 968, 973
BstBI	TTCGAA	1 cut(s)	930
BstC8I	GCNNGC	1 cut(s)	512
BstDEI	CTNAG	5 cut(s)	63, 414, 582, 620, 936
BstF5I	GGATG	3 cut(s)	441, 882, 1021
BstHHI	GCGC	1 cut(s)	724
BstKTI	GATC	7 cut(s)	7, 306, 532, 715, 790, 864, 986
BstMAI	GTCTC	2 cut(s)	291, 461
BstMBI	GATC	7 cut(s)	4, 303, 529, 712, 787, 861, 983
BstNI	CCWGG	1 cut(s)	1250
BstSCI	CCNGG	1 cut(s)	1248
BstSFI	CTRYAG	3 cut(s)	179, 201, 562
BstSLI	GKGCMC	3 cut(s)	150, 216, 1166
BstV1I	GCAGC	2 cut(s)	165, 1078
BstV2I	GAAGAC	3 cut(s)	64, 164, 884
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	91, 335
BtgZI	GCGATG	1 cut(s)	1185
BtsCI	GGATG	3 cut(s)	441, 882, 1021
BtsIMutI	CAGTG	1 cut(s)	739
BveI	ACCTGC	1 cut(s)	555
Cac8I	GCNNGC	1 cut(s)	512
CciI	TCATGA	1 cut(s)	633
CfoI	GCGC	1 cut(s)	724
Csp6I	GTAC	2 cut(s)	799, 902
CviAII	CATG	4 cut(s)	420, 634, 679, 1012
CviQI	GTAC	2 cut(s)	799, 902
DdeI	CTNAG	5 cut(s)	63, 414, 582, 620, 936
DpnI	GATC	7 cut(s)	6, 305, 531, 714, 789, 863, 985
DpnII	GATC	7 cut(s)	4, 303, 529, 712, 787, 861, 983
DraI	TTTAAA	1 cut(s)	1261
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	4 cut(s)	82, 492, 968, 973
EarI	CTCTTC	4 cut(s)	82, 492, 968, 973
EciI	GGCGGA	1 cut(s)	645
Eco130I	CCWWGG	2 cut(s)	86, 769
Eco147I	AGGCCT	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	1130
Eco81I	CCTNAGG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	1176
EcoRII	CCWGG	1 cut(s)	1248
EcoT14I	CCWWGG	2 cut(s)	86, 769
ErhI	CCWWGG	2 cut(s)	86, 769
FaeI	CATG	4 cut(s)	423, 637, 682, 1015
FaqI	GGGAC	2 cut(s)	218, 719
FatI	CATG	4 cut(s)	419, 633, 678, 1011
Fnu4HI	GCNGC	2 cut(s)	179, 1067
FokI	GGATG	3 cut(s)	448, 869, 1028
Fsp4HI	GCNGC	2 cut(s)	179, 1067
FspBI	CTAG	2 cut(s)	822, 1185
GlaI	GCGC	1 cut(s)	723
GluI	GCNGC	2 cut(s)	179, 1067
HaeIII	GGCC	2 cut(s)	91, 335
HapII	CCGG	1 cut(s)	343
HhaI	GCGC	1 cut(s)	724
Hin1II	CATG	4 cut(s)	423, 637, 682, 1015
Hin6I	GCGC	1 cut(s)	722
HinP1I	GCGC	1 cut(s)	722
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	4 cut(s)	128, 192, 578, 707
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	2 cut(s)	476, 559
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	4 cut(s)	415, 478, 666, 712
Hpy188III	TCNNGA	7 cut(s)	54, 137, 269, 608, 634, 896, 917
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	3 cut(s)	214, 294, 1108
HpyCH4III	ACNGT	1 cut(s)	640
HpyF3I	CTNAG	5 cut(s)	63, 414, 582, 620, 936
Hsp92II	CATG	4 cut(s)	423, 637, 682, 1015
HspAI	GCGC	1 cut(s)	722
Kzo9I	GATC	7 cut(s)	4, 303, 529, 712, 787, 861, 983
LmnI	GCTCC	1 cut(s)	680
Lsp1109I	GCAGC	2 cut(s)	165, 1078
LweI	GCATC	2 cut(s)	561, 865
MaeI	CTAG	2 cut(s)	822, 1185
MaeIII	GTNAC	2 cut(s)	369, 623
MalI	GATC	7 cut(s)	6, 305, 531, 714, 789, 863, 985
MboI	GATC	7 cut(s)	4, 303, 529, 712, 787, 861, 983
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	5 cut(s)	150, 216, 246, 314, 1166
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	8 cut(s)	160, 362, 374, 743, 847, 1176, 1188, 1241
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	701
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	2 cut(s)	558, 1260
MslI	CAYNNNNRTG	4 cut(s)	138, 324, 447, 632
Msp20I	TGGCCA	1 cut(s)	335
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	1250
MvaI	CCWGG	1 cut(s)	1250
NdeII	GATC	7 cut(s)	4, 303, 529, 712, 787, 861, 983
NlaIII	CATG	4 cut(s)	423, 637, 682, 1015
NlaIV	GGNNCC	4 cut(s)	6, 73, 642, 1077
NmuCI	GTSAC	1 cut(s)	623
NspV	TTCGAA	1 cut(s)	930
PagI	TCATGA	1 cut(s)	633
PceI	AGGCCT	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	128, 192, 578
PkrI	GCNGC	2 cut(s)	180, 1068
PleI	GAGTC	1 cut(s)	701
PpsI	GAGTC	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	1248
PspGI	CCWGG	1 cut(s)	1248
PspN4I	GGNNCC	4 cut(s)	6, 73, 642, 1077
PstI	CTGCAG	2 cut(s)	183, 566
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	800, 903
RsaNI	GTAC	2 cut(s)	799, 902
RseI	CAYNNNNRTG	4 cut(s)	138, 324, 447, 632
SaqAI	TTAA	2 cut(s)	558, 1260
SatI	GCNGC	2 cut(s)	179, 1067
Sau3AI	GATC	7 cut(s)	4, 303, 529, 712, 787, 861, 983
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	1 cut(s)	1250
SduI	GDGCHC	5 cut(s)	150, 216, 246, 314, 1166
SfaNI	GCATC	2 cut(s)	561, 865
SfcI	CTRYAG	3 cut(s)	179, 201, 562
SfuI	TTCGAA	1 cut(s)	930
SmiMI	CAYNNNNRTG	4 cut(s)	138, 324, 447, 632
SmlI	CTYRAG	2 cut(s)	683, 917
SmoI	CTYRAG	2 cut(s)	683, 917
Sse9I	AATT	8 cut(s)	160, 362, 374, 743, 847, 1176, 1188, 1241
SseBI	AGGCCT	1 cut(s)	91
SsiI	CCGC	1 cut(s)	656
SspI	AATATT	1 cut(s)	836
SspMI	CTAG	2 cut(s)	822, 1185
StuI	AGGCCT	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	1248
StyI	CCWWGG	2 cut(s)	86, 769
TaaI	ACNGT	1 cut(s)	640
TaqI	TCGA	3 cut(s)	55, 195, 930
TasI	AATT	8 cut(s)	160, 362, 374, 743, 847, 1176, 1188, 1241
TfiI	GAWTC	3 cut(s)	128, 192, 578
Tru1I	TTAA	2 cut(s)	558, 1260
Tru9I	TTAA	2 cut(s)	558, 1260
TscAI	CASTG	1 cut(s)	739
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	2 cut(s)	178, 1066
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	2 cut(s)	243, 555
TspGWI	ACGGA	1 cut(s)	780
TspRI	CASTG	1 cut(s)	739
XapI	RAATTY	4 cut(s)	743, 847, 1176, 1188
XspI	CTAG	2 cut(s)	822, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.