Prupe.1G017500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0005550
Physical Location & Seq
Reverse (-)
1203695 .. 1204270
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G017500.1

Sequence Viewer

Length: 327 bp
ATGGCCAAGCTCTTTGCTCCCTTTTACTTGCTTCTTGCCCTCTTTGTATTCACCTCAGTAAGAAAAATGATGCCAATGGTGAATGCCGATGAATGTACACTAGCAACTATTGGCGGCGGTTGTCCCGACATTGACGAGTGCGCCTTGACATGTAGTACTTGTTATCGGAATGTTGGGCGTACCAGATTTTACTGTGAATCTGCTGGCGGAATTGATTCATGTATTTGTGCCATGGCCAATGGCGCCCCCTGCAACCCTCCTGGCTCACCAAGGTGCCCGAACTGGCCTCGATCTATTCCTGCTGCTGCCAATTTCACCGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.51

Weight (kDa)

7.43

Isoelectric Point (pI)

54.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 242, 273
AciI CCGC 4 cut(s) 114, 117, 207, 318
AcoI YGGCCR 2 cut(s) 3, 234
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 3 cut(s) 97, 157, 181
AflIII ACRYGT 1 cut(s) 149
AjnI CCWGG 1 cut(s) 259
AleI CACNNNNGTG 1 cut(s) 271
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
AoxI GGCC 3 cut(s) 3, 234, 284
ApeKI GCWGC 2 cut(s) 302, 305
Asp700I GAANNNNTTC 1 cut(s) 214
AspLEI GCGC 2 cut(s) 143, 245
AsuHPI GGTGA 4 cut(s) 43, 91, 258, 307
BaeGI GKGCMC 1 cut(s) 278
BalI TGGCCA 2 cut(s) 5, 236
BanI GGYRCC 2 cut(s) 242, 273
BbvI GCAGC 2 cut(s) 289, 292
BciT130I CCWGG 1 cut(s) 261
BfaI CTAG 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 3 cut(s) 115, 303, 306
BlsI GCNGC 3 cut(s) 116, 304, 307
BmcAI AGTACT 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 244, 275
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 231, 269
Bse1I ACTGG 1 cut(s) 287
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 231, 269
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 278
BseXI GCAGC 2 cut(s) 289, 292
BshFI GGCC 3 cut(s) 5, 236, 286
BshNI GGYRCC 2 cut(s) 242, 273
BslFI GGGAC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 3 cut(s) 5, 236, 286
Bsp1286I GDGCHC 1 cut(s) 278
Bsp1407I TGTACA 1 cut(s) 95
Bsp143I GATC 1 cut(s) 290
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 4 cut(s) 114, 117, 207, 318
BspANI GGCC 3 cut(s) 5, 236, 286
BspCNI CTCAG 1 cut(s) 68
BspLI GGNNCC 2 cut(s) 244, 275
BspT107I GGYRCC 2 cut(s) 242, 273
BsrGI TGTACA 1 cut(s) 95
BsrI ACTGG 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 231, 269
BssMI GATC 1 cut(s) 290
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 2 cut(s) 231, 269
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 55
BstDSI CCRYGG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 2 cut(s) 143, 245
BstKTI GATC 1 cut(s) 293
BstMBI GATC 1 cut(s) 290
BstMWI GCNNNNNNNGC 2 cut(s) 242, 249
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 259
BstSLI GKGCMC 1 cut(s) 278
BstV1I GCAGC 2 cut(s) 289, 292
BsuRI GGCC 3 cut(s) 5, 236, 286
BtgI CCRYGG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 205
CfoI GCGC 2 cut(s) 143, 245
Csp6I GTAC 3 cut(s) 96, 156, 180
CviAII CATG 3 cut(s) 150, 219, 232
CviJI RGCY 5 cut(s) 5, 10, 236, 264, 286
CviKI_1 RGCY 5 cut(s) 5, 10, 236, 264, 286
CviQI GTAC 3 cut(s) 96, 156, 180
DdeI CTNAG 1 cut(s) 55
DinI GGCGCC 1 cut(s) 244
DpnI GATC 1 cut(s) 292
DpnII GATC 1 cut(s) 290
EaeI YGGCCR 2 cut(s) 3, 234
EciI GGCGGA 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 231, 269
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 231, 269
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
ErhI CCWWGG 2 cut(s) 231, 269
FaeI CATG 3 cut(s) 153, 222, 235
FaiI YATR 3 cut(s) 151, 220, 233
FaqI GGGAC 1 cut(s) 108
FatI CATG 3 cut(s) 149, 218, 231
Fnu4HI GCNGC 3 cut(s) 115, 303, 306
Fsp4HI GCNGC 3 cut(s) 115, 303, 306
FspBI CTAG 1 cut(s) 101
GlaI GCGC 2 cut(s) 142, 244
GluI GCNGC 3 cut(s) 115, 303, 306
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 3 cut(s) 5, 236, 286
HhaI GCGC 2 cut(s) 143, 245
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 3 cut(s) 153, 222, 235
Hin6I GCGC 2 cut(s) 141, 243
HinP1I GCGC 2 cut(s) 141, 243
HinfI GANTC 2 cut(s) 197, 215
HphI GGTGA 4 cut(s) 43, 91, 258, 307
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 249
HpyF3I CTNAG 1 cut(s) 55
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 3 cut(s) 153, 222, 235
HspAI GCGC 2 cut(s) 141, 243
KasI GGCGCC 1 cut(s) 242
Kzo9I GATC 1 cut(s) 290
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 7 cut(s) 189, 196, 246, 262, 268, 273, 312
Lsp1109I GCAGC 2 cut(s) 289, 292
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 101
MalI GATC 1 cut(s) 292
MboI GATC 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 278
MlsI TGGCCA 2 cut(s) 5, 236
MluCI AATT 3 cut(s) 210, 310, 322
MluNI TGGCCA 2 cut(s) 5, 236
Mly113I GGCGCC 1 cut(s) 243
MnlI CCTC 4 cut(s) 50, 64, 267, 297
Mox20I TGGCCA 2 cut(s) 5, 236
MroXI GAANNNNTTC 1 cut(s) 214
MscI TGGCCA 2 cut(s) 5, 236
MseI TTAA 1 cut(s) 325
MslI CAYNNNNRTG 1 cut(s) 271
Msp20I TGGCCA 2 cut(s) 5, 236
MspR9I CCNGG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 242, 249
NarI GGCGCC 1 cut(s) 243
NcoI CCATGG 1 cut(s) 231
NdeII GATC 1 cut(s) 290
NlaIII CATG 3 cut(s) 153, 222, 235
NlaIV GGNNCC 2 cut(s) 244, 275
NspI RCATGY 1 cut(s) 153
OliI CACNNNNGTG 1 cut(s) 271
PciI ACATGT 1 cut(s) 149
PctI GAATGC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 214
PfeI GAWTC 2 cut(s) 197, 215
PkrI GCNGC 3 cut(s) 116, 304, 307
PluTI GGCGCC 1 cut(s) 246
PscI ACATGT 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 244, 275
RsaI GTAC 3 cut(s) 97, 157, 181
RsaNI GTAC 3 cut(s) 96, 156, 180
RseI CAYNNNNRTG 1 cut(s) 271
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 3 cut(s) 115, 303, 306
Sau3AI GATC 1 cut(s) 290
ScaI AGTACT 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 1 cut(s) 278
SetI ASST 3 cut(s) 12, 56, 275
SfaNI GCATC 1 cut(s) 60
SfoI GGCGCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 271
Sse9I AATT 3 cut(s) 210, 310, 322
SsiI CCGC 4 cut(s) 114, 117, 207, 318
SspDI GGCGCC 1 cut(s) 242
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 2 cut(s) 231, 269
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 289
TasI AATT 3 cut(s) 210, 310, 322
TatI WGTACW 2 cut(s) 95, 155
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 2 cut(s) 197, 215
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TseI GCWGC 2 cut(s) 302, 305
TspDTI ATGAA 2 cut(s) 105, 207
XceI RCATGY 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 214
XspI CTAG 1 cut(s) 101
ZrmI AGTACT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.