Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Forward (+)

29916296 .. 29918196

Gene Structure 1901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033639

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCTGGAGACAGGCGGATCAGAGGGAGGAGATGGAGGATTCCGGTCGCTGTGGTTGAAGCTACACCATCGATCTGTGGTTCTAAGGCTACGTTTTCTCTGACAGAGTTCATGTCAGAGATCATGGCTGGGTGTTGGTTGGAGATCGTGGCAAGTCGGAAGTTTCCGGTGGCTGGGTTTTGGTTGGAGATCGTGGCAAGGAGGAGGTGCAGTGATGGTGACGTGGTGGTGGCAGTGGCAGCAGCAGCGCTGGTTGGATCGTGGTGTTGTTGGAGTGGGCTGGACCTGTGCTCCTTCCTTGCTGGGCCGAGTGCAGCTACATGTAGGAAGGATGAAGTTGTTGGTAAGGAGGTTGCGGCCACTGAAAGAATGGTTGATAGTGCTCGTAGCAAGGCTGCGGCTGCATGTAGGAAGGATGAAGTTGTTGGTATAGAGGTTGCGGCTGCTGAAAGAATGGTTGATAGTGCTCATAGCAAGGCTGCGGTTGCTTGGAGGAAGGATGAAGTTGTTGGTAATGAGGCTGCGGCTGCTGAAAGGATGGTTGATATTGCTTGTAGCAAGGCTGAGACATCGTTTGTTGGTAAGAATGTTGTTGTTGCTGGTCGAAAAGTTGCTGCTGCTGCCGCATACAAGGAACATTTGGTGACGACGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

23.12

Weight (kDa)

8.59

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	16, 356, 398, 440, 482, 524, 624
AclWI	GGATC	2 cut(s)	26, 265
AcoI	YGGCCR	1 cut(s)	357
AfeI	AGCGCT	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	59
AjiI	CACGTC	1 cut(s)	223
AluBI	AGCT	2 cut(s)	62, 317
AluI	AGCT	2 cut(s)	62, 317
Alw21I	GWGCWC	3 cut(s)	293, 385, 469
Alw26I	GTCTC	2 cut(s)	3, 560
AlwI	GGATC	2 cut(s)	26, 265
Aor51HI	AGCGCT	1 cut(s)	249
AoxI	GGCC	2 cut(s)	305, 357
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	2 cut(s)	283, 305
AsuHPI	GGTGA	2 cut(s)	230, 655
AvaII	GGWCC	1 cut(s)	283
Bbv12I	GWGCWC	3 cut(s)	293, 385, 469
BccI	CCATC	4 cut(s)	27, 76, 209, 532
BcoDI	GTCTC	2 cut(s)	3, 560
BfoI	RGCGCY	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	283, 305
BoxI	GACNNNNGTC	1 cut(s)	650
BpmI	CTGGAG	1 cut(s)	27
Bsa29I	ATCGAT	1 cut(s)	71
BsaWI	WCCGGW	2 cut(s)	43, 166
BsaXI	ACNNNNNCTCC	4 cut(s)	196, 226, 275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
BseCI	ATCGAT	1 cut(s)	71
BseGI	GGATG	4 cut(s)	337, 421, 505, 543
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	555
BseRI	GAGGAG	2 cut(s)	43, 217
BseYI	CCCAGC	3 cut(s)	128, 173, 302
BsgI	GTGCAG	2 cut(s)	229, 333
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	307, 359
BshVI	ATCGAT	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	48
BsiHKAI	GWGCWC	3 cut(s)	293, 385, 469
BsiSI	CCGG	2 cut(s)	44, 167
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	2 cut(s)	3, 560
BsnI	GGCC	2 cut(s)	307, 359
Bsp1286I	GDGCHC	3 cut(s)	293, 385, 469
Bsp143I	GATC	6 cut(s)	18, 72, 120, 144, 189, 257
BspACI	CCGC	7 cut(s)	16, 356, 398, 440, 482, 524, 624
BspANI	GGCC	2 cut(s)	307, 359
BspCNI	CTCAG	1 cut(s)	556
BspDI	ATCGAT	1 cut(s)	71
BspPI	GGATC	2 cut(s)	26, 265
BssMI	GATC	6 cut(s)	18, 72, 120, 144, 189, 257
Bst4CI	ACNGT	1 cut(s)	652
BstDEI	CTNAG	2 cut(s)	84, 564
BstF5I	GGATG	4 cut(s)	337, 421, 505, 543
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	6 cut(s)	21, 75, 123, 147, 192, 260
BstMAI	GTCTC	2 cut(s)	3, 560
BstMBI	GATC	6 cut(s)	18, 72, 120, 144, 189, 257
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	7 cut(s)	239, 245, 401, 485, 527, 620, 623
BstNSI	RCATGY	2 cut(s)	324, 408
BstPAI	GACNNNNGTC	1 cut(s)	650
Bsu15I	ATCGAT	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	307, 359
BsuTUI	ATCGAT	1 cut(s)	71
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	4 cut(s)	337, 421, 505, 543
BtsI	GCAGTG	2 cut(s)	217, 240
BtsIMutI	CAGTG	3 cut(s)	217, 240, 360
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	283, 305
ClaI	ATCGAT	1 cut(s)	71
CviAII	CATG	4 cut(s)	112, 124, 321, 405
DdeI	CTNAG	2 cut(s)	84, 564
DpnI	GATC	6 cut(s)	20, 74, 122, 146, 191, 259
DpnII	GATC	6 cut(s)	18, 72, 120, 144, 189, 257
EaeI	YGGCCR	1 cut(s)	357
EciI	GGCGGA	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	249
FaeI	CATG	4 cut(s)	115, 127, 324, 408
FaiI	YATR	7 cut(s)	113, 125, 322, 406, 431, 471, 628
FatI	CATG	4 cut(s)	111, 123, 320, 404
FokI	GGATG	4 cut(s)	344, 428, 512, 550
GlaI	GCGC	1 cut(s)	249
GsaI	CCCAGC	3 cut(s)	132, 177, 306
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	307, 359
HapII	CCGG	2 cut(s)	44, 167
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	4 cut(s)	115, 127, 324, 408
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	1 cut(s)	40
HpaII	CCGG	2 cut(s)	44, 167
HphI	GGTGA	2 cut(s)	230, 655
Hpy188I	TCNGA	4 cut(s)	23, 102, 118, 159
Hpy99I	CGWCG	1 cut(s)	652
HpyAV	CCTTC	4 cut(s)	304, 322, 406, 490
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	2 cut(s)	92, 222
HpyCH4V	TGCA	3 cut(s)	210, 314, 404
HpyF10VI	GCNNNNNNNGC	7 cut(s)	239, 245, 401, 485, 527, 620, 623
HpyF3I	CTNAG	2 cut(s)	84, 564
HpySE526I	ACGT	2 cut(s)	92, 222
Hsp92II	CATG	4 cut(s)	115, 127, 324, 408
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	6 cut(s)	18, 72, 120, 144, 189, 257
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	9 cut(s)	57, 114, 159, 180, 236, 266, 288, 299, 585
MaeII	ACGT	2 cut(s)	92, 222
MaeIII	GTNAC	2 cut(s)	218, 643
MalI	GATC	6 cut(s)	20, 74, 122, 146, 191, 259
MboI	GATC	6 cut(s)	18, 72, 120, 144, 189, 257
MhlI	GDGCHC	3 cut(s)	293, 385, 469
MmeI	TCCRAC	5 cut(s)	120, 137, 165, 235, 251
MnlI	CCTC	9 cut(s)	17, 21, 30, 195, 198, 343, 427, 486, 511
MspI	CCGG	2 cut(s)	44, 167
MwoI	GCNNNNNNNGC	7 cut(s)	239, 245, 401, 485, 527, 620, 623
NdeII	GATC	6 cut(s)	18, 72, 120, 144, 189, 257
NlaIII	CATG	4 cut(s)	115, 127, 324, 408
NmeAIII	GCCGAG	1 cut(s)	333
NmuCI	GTSAC	2 cut(s)	218, 643
NspI	RCATGY	2 cut(s)	324, 408
PciI	ACATGT	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	40
PscI	ACATGT	1 cut(s)	320
PshAI	GACNNNNGTC	1 cut(s)	650
PspFI	CCCAGC	3 cut(s)	128, 173, 302
PspPI	GGNCC	2 cut(s)	283, 305
Sau3AI	GATC	6 cut(s)	18, 72, 120, 144, 189, 257
Sau96I	GGNCC	2 cut(s)	283, 305
SduI	GDGCHC	3 cut(s)	293, 385, 469
SetI	ASST	8 cut(s)	64, 95, 209, 225, 288, 319, 354, 438
SinI	GGWCC	1 cut(s)	283
SsiI	CCGC	7 cut(s)	16, 356, 398, 440, 482, 524, 624
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	2 cut(s)	95, 225
TaqI	TCGA	2 cut(s)	71, 604
TauI	GCSGC	5 cut(s)	359, 401, 443, 527, 626
TfiI	GAWTC	1 cut(s)	40
TscAI	CASTG	3 cut(s)	217, 240, 367
TseFI	GTSAC	2 cut(s)	218, 643
Tsp45I	GTSAC	2 cut(s)	218, 643
TspDTI	ATGAA	4 cut(s)	100, 348, 432, 516
TspRI	CASTG	3 cut(s)	217, 240, 367
VpaK11BI	GGWCC	1 cut(s)	283
XceI	RCATGY	2 cut(s)	324, 408
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.