RLG00000008964

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005550
Physical Location & Seq
Reverse (-)
43906303 .. 43908639
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008964

Sequence Viewer

Length: 336 bp
ATGGCGCGTGCAGCCGAACAAGCTCTGGCCTTTGTGGCAATGTTTCTCTCAGATGGAAAGGATGGTGGTGGCAAGTTTTGGTCGTTGTTGAGGAGATTGAACCACTCGATCCCGATCGGATCCGAATATGATCTGAGGTTAAGTGTGTTGGATGGTAGGATAAGCAGCATGGCTTGGCATGGGATGGCTAGGGACAGGCGGTCTGGAGGGATAGGGTGGAGGATTGGTGTCATTGAAGCCACGACTCGATTTGTGGAAAAGAGATTTGAGTGCAAGCTATTGCGGGGCTTCATAGATTTAGAAACTAGCTTTGGAATTTTGATTGGAAACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.39

Weight (kDa)

9.5

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 7
AciI CCGC 2 cut(s) 199, 283
AclWI GGATC 3 cut(s) 103, 114, 127
AcsI RAATTY 1 cut(s) 315
AgsI TTSAA 2 cut(s) 100, 236
AhdI GACNNNNNGTC 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 3 cut(s) 23, 277, 309
AluI AGCT 3 cut(s) 23, 277, 309
AlwI GGATC 3 cut(s) 103, 114, 127
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 11, 165
ApoI RAATTY 1 cut(s) 315
AspLEI GCGC 1 cut(s) 7
BamHI GGATCC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 23, 177
BccI CCATC 4 cut(s) 47, 56, 146, 178
BfaI CTAG 3 cut(s) 189, 306, 334
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 2 cut(s) 12, 166
BlsI GCNGC 2 cut(s) 13, 167
BmeRI GACNNNNNGTC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 121
BpmI CTGGAG 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bse3DI GCAATG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 113
BseGI GGATG 3 cut(s) 67, 157, 189
BseJI GATNNNNATC 1 cut(s) 113
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 63, 125
BseRI GAGGAG 1 cut(s) 106
BseXI GCAGC 2 cut(s) 23, 177
BsgI GTGCAG 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 1 cut(s) 29
Bsp143I GATC 4 cut(s) 108, 114, 119, 130
BspACI CCGC 2 cut(s) 199, 283
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 2 cut(s) 62, 126
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 3 cut(s) 103, 114, 127
BsrDI GCAATG 1 cut(s) 45
BssMI GATC 4 cut(s) 108, 114, 119, 130
BstC8I GCNNGC 2 cut(s) 9, 275
BstDEI CTNAG 2 cut(s) 49, 134
BstF5I GGATG 3 cut(s) 67, 157, 189
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 111, 117, 122, 133
BstMBI GATC 4 cut(s) 108, 114, 119, 130
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 35
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 23, 177
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 3 cut(s) 67, 157, 189
Cac8I GCNNGC 2 cut(s) 9, 275
CfoI GCGC 1 cut(s) 7
CviAII CATG 2 cut(s) 169, 179
CviJI RGCY 9 cut(s) 14, 23, 29, 173, 188, 239, 277, 288, 309
CviKI_1 RGCY 9 cut(s) 14, 23, 29, 173, 188, 239, 277, 288, 309
DdeI CTNAG 2 cut(s) 49, 134
DpnI GATC 4 cut(s) 110, 116, 121, 132
DpnII GATC 4 cut(s) 108, 114, 119, 130
DriI GACNNNNNGTC 1 cut(s) 199
Eam1105I GACNNNNNGTC 1 cut(s) 199
FaeI CATG 2 cut(s) 172, 182
FaiI YATR 4 cut(s) 129, 170, 180, 293
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 168, 178
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 12, 166
FokI GGATG 3 cut(s) 74, 164, 196
Fsp4HI GCNGC 2 cut(s) 12, 166
FspBI CTAG 3 cut(s) 189, 306, 334
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 12, 166
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 1 cut(s) 29
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 172, 182
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 244
Hpy188I TCNGA 4 cut(s) 52, 119, 124, 135
Hpy188III TCNNGA 2 cut(s) 112, 204
HpyCH4V TGCA 2 cut(s) 11, 273
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 35
HpyF3I CTNAG 2 cut(s) 49, 134
Hsp92II CATG 2 cut(s) 172, 182
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 4 cut(s) 108, 114, 119, 130
LpnPI CCDG 3 cut(s) 11, 181, 189
Lsp1109I GCAGC 2 cut(s) 23, 177
MaeI CTAG 3 cut(s) 189, 306, 334
MalI GATC 4 cut(s) 110, 116, 121, 132
MboI GATC 4 cut(s) 108, 114, 119, 130
MflI RGATCY 1 cut(s) 119
MluCI AATT 1 cut(s) 315
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 4 cut(s) 84, 129, 200, 213
MseI TTAA 1 cut(s) 140
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 35
NdeII GATC 4 cut(s) 108, 114, 119, 130
NlaIII CATG 2 cut(s) 172, 182
NlaIV GGNNCC 1 cut(s) 121
PkrI GCNGC 2 cut(s) 13, 167
Ple19I CGATCG 1 cut(s) 117
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 121
PsuI RGATCY 1 cut(s) 119
PvuI CGATCG 1 cut(s) 117
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 2 cut(s) 12, 166
Sau3AI GATC 4 cut(s) 108, 114, 119, 130
SchI GAGTC 1 cut(s) 238
SetI ASST 4 cut(s) 25, 140, 279, 311
Sse9I AATT 1 cut(s) 315
SsiI CCGC 2 cut(s) 199, 283
SspMI CTAG 3 cut(s) 189, 306, 334
TaqI TCGA 2 cut(s) 107, 247
TasI AATT 1 cut(s) 315
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseI GCWGC 2 cut(s) 11, 165
TspDTI ATGAA 1 cut(s) 280
XapI RAATTY 1 cut(s) 315
XspI CTAG 3 cut(s) 189, 306, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.