RLG00000009141

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005550
Physical Location & Seq
Forward (+)
47322148 .. 47324466
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009141

Sequence Viewer

Length: 522 bp
ATGGAGGCTGATATCCTCCTATCTCTGAAATTTGAAATGGGAAATCTCAATGTTCGTACATCCTTGAGAAAATTCATTGATCTTGCTCAAGGGAGTTACTACAAATTGAGATTGGGTGTGTTGGATGGTGGGATAGGTTGCAAGCCTTGGCATGGGGTGGCTGGGGACAAGTTGATTAGAGGGATGAGATGGAGGGATAGAGTCACGGTGGTTGAAGCGTCGTCGATCCATGGTTCTGCAGCCTCATTTTCTCTGCCAATGAGTTGGCTGCCCGGGTTCAAATCGGAGACCGAGCTGACTGTTCCGGTGGCTGGGATTTGGATGGAGATCTGGGCTAGGCGGAGGCACAGTGATGGTGGCGCAGTAATGGTGGCAGCATTGATAGGTCTGTGGTGGTGTTTGATTGGGCTGGACCCGTGCATCCTCATGGTTGGGCCTAATGGTTCTTGGGACTGGGCTTTGGCTCTGGGCCTATACTTTTATTATATTATGTTTTATTGTTTATTACTTTTAGTAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

174

Amino Acids

19.36

Weight (kDa)

8.38

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 340
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 2 cut(s) 29, 71
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 2 cut(s) 152, 311
AgsI TTSAA 3 cut(s) 35, 215, 280
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 220
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 2 cut(s) 434, 469
ApeKI GCWGC 3 cut(s) 239, 268, 374
ApoI RAATTY 2 cut(s) 29, 71
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 3 cut(s) 412, 434, 469
AsuC2I CCSGG 2 cut(s) 273, 274
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 412
BbvI GCAGC 3 cut(s) 251, 255, 386
BccI CCATC 4 cut(s) 119, 183, 316, 347
BcnI CCSGG 2 cut(s) 273, 274
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 237
BglII AGATCT 1 cut(s) 327
BisI GCNGC 3 cut(s) 240, 269, 375
BlsI GCNGC 3 cut(s) 241, 270, 376
Bme1390I CCNGG 2 cut(s) 273, 274
Bme18I GGWCC 1 cut(s) 412
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 3 cut(s) 412, 434, 469
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 2 cut(s) 273, 274
BmrI ACTGGG 1 cut(s) 463
BmsI GCATC 1 cut(s) 429
BmuI ACTGGG 1 cut(s) 463
BpuEI CTTGAG 2 cut(s) 72, 85
BpuMI CCSGG 2 cut(s) 273, 274
BsaBI GATNNNNATC 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 3 cut(s) 146, 229, 272
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 334, 364
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 311
Bse1I ACTGG 1 cut(s) 458
Bse8I GATNNNNATC 1 cut(s) 326
BseDI CCNNGG 3 cut(s) 146, 229, 272
BseGI GGATG 5 cut(s) 59, 130, 189, 327, 420
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 2 cut(s) 152, 311
BseNI ACTGG 1 cut(s) 458
BseXI GCAGC 3 cut(s) 251, 255, 386
BseYI CCCAGC 2 cut(s) 161, 311
BshFI GGCC 2 cut(s) 436, 471
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 273, 305
BslFI GGGAC 2 cut(s) 179, 464
BslI CCNNNNNNNGG 2 cut(s) 152, 311
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 2 cut(s) 179, 464
BsnI GGCC 2 cut(s) 436, 471
Bso31I GGTCTC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 272
Bsp143I GATC 3 cut(s) 79, 225, 327
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 1 cut(s) 340
BspANI GGCC 2 cut(s) 436, 471
BspLI GGNNCC 1 cut(s) 414
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 281
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 3 cut(s) 146, 229, 272
BssMI GATC 3 cut(s) 79, 225, 327
BssT1I CCWWGG 2 cut(s) 146, 229
Bst4CI ACNGT 3 cut(s) 208, 301, 350
BstC8I GCNNGC 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 5 cut(s) 59, 130, 189, 327, 420
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 3 cut(s) 82, 228, 330
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 3 cut(s) 79, 225, 327
BstSCI CCNGG 2 cut(s) 271, 272
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 251, 255, 386
BstX2I RGATCY 1 cut(s) 327
BstXI CCANNNNNNTGG 1 cut(s) 264
BstYI RGATCY 1 cut(s) 327
BsuRI GGCC 2 cut(s) 436, 471
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 5 cut(s) 59, 130, 189, 327, 420
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 3 cut(s) 412, 434, 469
Cfr9I CCCGGG 1 cut(s) 272
CseI GACGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 57
CviAII CATG 3 cut(s) 152, 230, 427
CviQI GTAC 1 cut(s) 57
DpnI GATC 3 cut(s) 81, 227, 329
DpnII GATC 3 cut(s) 79, 225, 327
EciI GGCGGA 1 cut(s) 355
Eco130I CCWWGG 2 cut(s) 146, 229
Eco31I GGTCTC 1 cut(s) 281
Eco32I GATATC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 412
Eco88I CYCGRG 1 cut(s) 272
EcoRV GATATC 1 cut(s) 13
EcoT14I CCWWGG 2 cut(s) 146, 229
ErhI CCWWGG 2 cut(s) 146, 229
FaeI CATG 3 cut(s) 155, 233, 430
FaiI YATR 6 cut(s) 153, 231, 428, 475, 486, 491
FaqI GGGAC 2 cut(s) 179, 464
FatI CATG 3 cut(s) 151, 229, 426
Fnu4HI GCNGC 3 cut(s) 240, 269, 375
FokI GGATG 5 cut(s) 46, 137, 196, 334, 407
Fsp4HI GCNGC 3 cut(s) 240, 269, 375
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 361
GluI GCNGC 3 cut(s) 240, 269, 375
GsaI CCCAGC 2 cut(s) 165, 315
HaeIII GGCC 2 cut(s) 436, 471
HapII CCGG 2 cut(s) 273, 305
HgaI GACGC 1 cut(s) 207
HhaI GCGC 1 cut(s) 362
Hin1II CATG 3 cut(s) 155, 233, 430
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HinfI GANTC 1 cut(s) 201
HpaII CCGG 2 cut(s) 273, 305
Hpy188I TCNGA 2 cut(s) 27, 286
Hpy99I CGWCG 2 cut(s) 223, 226
HpyCH4III ACNGT 3 cut(s) 208, 301, 350
HpyCH4V TGCA 3 cut(s) 141, 239, 420
Hsp92II CATG 3 cut(s) 155, 233, 430
HspAI GCGC 1 cut(s) 360
Kzo9I GATC 3 cut(s) 79, 225, 327
LpnPI CCDG 8 cut(s) 147, 286, 297, 316, 318, 395, 439, 452
Lsp1109I GCAGC 3 cut(s) 251, 255, 386
LweI GCATC 1 cut(s) 429
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 95, 202
MalI GATC 3 cut(s) 81, 227, 329
MboI GATC 3 cut(s) 79, 225, 327
MflI RGATCY 1 cut(s) 327
MluCI AATT 3 cut(s) 29, 71, 104
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 6 cut(s) 26, 173, 186, 253, 336, 434
MslI CAYNNNNRTG 2 cut(s) 351, 425
MspI CCGG 2 cut(s) 273, 305
MspR9I CCNGG 2 cut(s) 273, 274
NciI CCSGG 2 cut(s) 273, 274
NcoI CCATGG 1 cut(s) 229
NdeII GATC 3 cut(s) 79, 225, 327
NlaIII CATG 3 cut(s) 155, 233, 430
NlaIV GGNNCC 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 202
PkrI GCNGC 3 cut(s) 241, 270, 376
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PspFI CCCAGC 2 cut(s) 161, 311
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 3 cut(s) 412, 434, 469
PstI CTGCAG 1 cut(s) 241
PsuI RGATCY 1 cut(s) 327
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
RseI CAYNNNNRTG 2 cut(s) 351, 425
SatI GCNGC 3 cut(s) 240, 269, 375
Sau3AI GATC 3 cut(s) 79, 225, 327
Sau96I GGNCC 3 cut(s) 412, 434, 469
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 2 cut(s) 273, 274
SetI ASST 3 cut(s) 139, 297, 388
SfaNI GCATC 1 cut(s) 429
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 412
SmaI CCCGGG 1 cut(s) 274
SmiMI CAYNNNNRTG 2 cut(s) 351, 425
SmlI CTYRAG 2 cut(s) 64, 87
SmoI CTYRAG 2 cut(s) 64, 87
Sse9I AATT 3 cut(s) 29, 71, 104
SsiI CCGC 1 cut(s) 340
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 271, 272
StyI CCWWGG 2 cut(s) 146, 229
TaaI ACNGT 3 cut(s) 208, 301, 350
TaqI TCGA 1 cut(s) 224
TaqII GACCGA 1 cut(s) 305
TasI AATT 3 cut(s) 29, 71, 104
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 3 cut(s) 239, 268, 374
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 64
TspMI CCCGGG 1 cut(s) 272
TspRI CASTG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 412
XapI RAATTY 2 cut(s) 29, 71
XmaI CCCGGG 1 cut(s) 272
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.