Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Reverse (-)

37349613 .. 37353192

Gene Structure 3580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024597

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGAATCAAACTCAGCCCTTTATGCCCCATGTCCCTCACTACCAAATGTTCAAGAAATGGTGAGGACTGACCCTTTTCAGGTACCTGAAAAATACATCAGGAATGAAACAGACATTACAAAAGATGCAGATTTGTGTCCTCATCTTTCTTCTGAGGTTCCCATCATTGATCTTTCACTGCTCTCAAAAGGGCACAAAGAGGAGCTCACCAAGCTAGACCAGGCTTGCAAGGAATGGGGTTTCTTTCAGGGCGAGGATGGTGGTGGCCGAGATTGGAATGCTGTTGAGATTGAACCACTCGCTCCCGAGCGGTTCAGATCGGAATTTAGGTCGAGTATGTTGGATGGCCGGTTAGGCAGCAATGCTTGGCAAGGGATGGATGGGGACAGGCAGTCTGGAGGGATGAGATGGAGGTTTAGCGTGGTTGCTGCTACGGCGTCAATCTGCGGTTTTGGGGTTCCGTCCTCTTCATGCTGTAGCGCCGGCCCGATGGTAGTCGCTCCAAACCTGTTGGGTCGGGGTTGGGGTTGGGGGATCAGGTTGTCTTGGATTGGGGTTGTGGGTATTGCCCCCGGATCTGGTTGGGATAGGGTGGCCGGAATAGCTGGGCTTTGGGACAATCGGGTTGGCGGGGCGCTGACAGAGGTGATCGTCGGCAGGTGGGAGATCGATGCAGGCGAGGGCGATCTGATGCAGGTTGGGGAGTTCAGATGCAGGTGGTGGTGTGCAAGCGGTGGTGTTTGCAGGTGGTGGGAGGCTATTGAGACATACTCTAGTGAAGTTAGAAGAGTTGGAGAGGATCTTCTCAGGTCTCTATCGTTAATCATGGGGATGGAGAAGGATGCTGTTCTCGGACTACATCAAGAGTTGGTCCAACCTCTGTCTGTAGCCTACTATCCTCAGTGCTCAATGCCTGAGAAAGTACTTGGTCTAAGTGCACACTCAGACAAAGGGAGCTTAGCCATAGTTATGCAAGAAGATGATGTAATGGGACTGCAAATCAAACACAACGGAAAATGGGTACCAATCAAGCCCATTCACGATGCCTTCATTGTGAATGTTGGAGATATTGTTGAGATATGGAGTAATGGGAAGTACAAGAGCATTGAACACAGAGTTGTAACAAACGAAAGCAGGGCGAGGATCTCTTATTCAACTTTTTGTTTACCACATCAAAATGCAGAAATTGAACCCCTGGATCAAATGGTCCTTGCGTCACCGGGGTCTTTTCCGTTGTACAACAAAGTCACTTATGGGGATTATCTGAGGGAAACCAAGAAGATGAAATCTGAAGGGAAGGCACATATCGTTGAAGTTGCCAAGATTGCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

445

Amino Acids

49.04

Weight (kDa)

5.36

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	53 - 83	5.4e-06	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	294 - 390	6.5e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	648, 705, 735
Acc36I	ACCTGC	4 cut(s)	648, 685, 705, 735
Acc65I	GGTACC	2 cut(s)	82, 1021
AccB1I	GGYRCC	2 cut(s)	82, 1021
AccBSI	CCGCTC	1 cut(s)	310
AciI	CCGC	4 cut(s)	310, 447, 630, 732
AclWI	GGATC	5 cut(s)	542, 583, 807, 1151, 1206
AcoI	YGGCCR	3 cut(s)	265, 346, 594
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	1311
AcyI	GRCGYC	1 cut(s)	437
AfaI	GTAC	5 cut(s)	84, 924, 1023, 1097, 1238
AfiI	CCNNNNNNNGG	2 cut(s)	79, 578
AgsI	TTSAA	6 cut(s)	53, 293, 1109, 1155, 1190, 1313
AhdI	GACNNNNNGTC	1 cut(s)	391
AjnI	CCWGG	2 cut(s)	219, 1194
AluBI	AGCT	4 cut(s)	205, 214, 605, 957
AluI	AGCT	4 cut(s)	205, 214, 605, 957
Alw21I	GWGCWC	3 cut(s)	207, 908, 940
Alw26I	GTCTC	2 cut(s)	758, 816
Alw44I	GTGCAC	1 cut(s)	936
AlwI	GGATC	5 cut(s)	542, 583, 807, 1151, 1206
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	4 cut(s)	265, 346, 484, 594
ApaLI	GTGCAC	1 cut(s)	936
ApeKI	GCWGC	2 cut(s)	357, 428
ApoI	RAATTY	1 cut(s)	323
Asp718I	GGTACC	2 cut(s)	82, 1021
AspLEI	GCGC	2 cut(s)	482, 637
AspS9I	GGNCC	3 cut(s)	485, 871, 1207
AsuC2I	CCSGG	2 cut(s)	573, 1221
AsuHPI	GGTGA	4 cut(s)	73, 199, 658, 1209
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	871, 1207
BaeGI	GKGCMC	2 cut(s)	195, 940
BanI	GGYRCC	2 cut(s)	82, 1021
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	3 cut(s)	207, 908, 940
BbvI	GCAGC	2 cut(s)	369, 415
BccI	CCATC	8 cut(s)	170, 251, 338, 370, 374, 402, 484, 826
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	2 cut(s)	221, 1196
BcnI	CCSGG	2 cut(s)	573, 1221
BcoDI	GTCTC	2 cut(s)	758, 816
BfaI	CTAG	2 cut(s)	215, 774
BfmI	CTRYAG	2 cut(s)	475, 885
BfoI	RGCGCY	2 cut(s)	483, 638
BfuAI	ACCTGC	4 cut(s)	648, 685, 705, 735
BglI	GCCNNNNNGGC	1 cut(s)	354
BisI	GCNGC	2 cut(s)	358, 429
BlpI	GCTNAGC	1 cut(s)	958
BlsI	GCNGC	2 cut(s)	359, 430
BmcAI	AGTACT	1 cut(s)	924
Bme1390I	CCNGG	4 cut(s)	221, 573, 1196, 1221
Bme18I	GGWCC	2 cut(s)	871, 1207
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	3 cut(s)	485, 871, 1207
BmiI	GGNNCC	4 cut(s)	84, 159, 459, 1023
BmrFI	CCNGG	4 cut(s)	221, 573, 1196, 1221
BmsI	GCATC	6 cut(s)	115, 661, 681, 701, 832, 1033
BplI	GAGNNNNNCTC	2 cut(s)	755, 787
BpmI	CTGGAG	1 cut(s)	417
Bpu1102I	GCTNAGC	1 cut(s)	958
BpuMI	CCSGG	2 cut(s)	573, 1221
Bsa29I	ATCGAT	1 cut(s)	669
BsaHI	GRCGYC	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	816
BsaJI	CCNNGG	3 cut(s)	571, 1194, 1220
BsaXI	ACNNNNNCTCC	2 cut(s)	1056, 1086
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 578
Bse118I	RCCGGY	2 cut(s)	348, 482
Bse3DI	GCAATG	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	221, 1196
BseCI	ATCGAT	1 cut(s)	669
BseDI	CCNNGG	3 cut(s)	571, 1194, 1220
BseGI	GGATG	7 cut(s)	262, 349, 381, 385, 408, 837, 847
BseLI	CCNNNNNNNGG	2 cut(s)	79, 578
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	7 cut(s)	27, 144, 820, 906, 914, 957, 1256
BseRI	GAGGAG	1 cut(s)	215
BseSI	GKGCMC	2 cut(s)	195, 940
BseXI	GCAGC	2 cut(s)	369, 415
BseYI	CCCAGC	1 cut(s)	605
BshFI	GGCC	4 cut(s)	267, 348, 486, 596
BshNI	GGYRCC	2 cut(s)	82, 1021
BshVI	ATCGAT	1 cut(s)	669
BsiHKAI	GWGCWC	3 cut(s)	207, 908, 940
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	5 cut(s)	349, 483, 573, 597, 1220
BslFI	GGGAC	4 cut(s)	18, 398, 629, 1005
BslI	CCNNNNNNNGG	2 cut(s)	79, 578
BsmAI	GTCTC	2 cut(s)	758, 816
BsmFI	GGGAC	4 cut(s)	18, 398, 629, 1005
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	4 cut(s)	267, 348, 486, 596
Bso31I	GGTCTC	1 cut(s)	816
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	4 cut(s)	195, 207, 908, 940
Bsp1407I	TGTACA	1 cut(s)	1236
Bsp1720I	GCTNAGC	1 cut(s)	958
BspACI	CCGC	4 cut(s)	310, 447, 630, 732
BspANI	GGCC	4 cut(s)	267, 348, 486, 596
BspCNI	CTCAG	7 cut(s)	26, 145, 819, 907, 913, 956, 1257
BspDI	ATCGAT	1 cut(s)	669
BspLI	GGNNCC	4 cut(s)	84, 159, 459, 1023
BspMI	ACCTGC	4 cut(s)	648, 685, 705, 735
BspPI	GGATC	5 cut(s)	542, 583, 807, 1151, 1206
BspT107I	GGYRCC	2 cut(s)	82, 1021
BspTNI	GGTCTC	1 cut(s)	816
BsrBI	CCGCTC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	367
BsrFI	RCCGGY	2 cut(s)	348, 482
BsrGI	TGTACA	1 cut(s)	1236
BssAI	RCCGGY	2 cut(s)	348, 482
BssECI	CCNNGG	3 cut(s)	571, 1194, 1220
BssNI	GRCGYC	1 cut(s)	437
Bst2UI	CCWGG	2 cut(s)	221, 1196
Bst6I	CTCTTC	2 cut(s)	472, 781
BstACI	GRCGYC	1 cut(s)	437
BstAUI	TGTACA	1 cut(s)	1236
BstC8I	GCNNGC	4 cut(s)	226, 484, 676, 730
BstDEI	CTNAG	9 cut(s)	13, 153, 806, 900, 915, 932, 943, 958, 1265
BstF5I	GGATG	7 cut(s)	262, 349, 381, 385, 408, 837, 847
BstH2I	RGCGCY	2 cut(s)	483, 638
BstHHI	GCGC	2 cut(s)	482, 637
BstMAI	GTCTC	2 cut(s)	758, 816
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 211, 354, 434, 602, 1325
BstNI	CCWGG	2 cut(s)	221, 1196
BstSCI	CCNGG	4 cut(s)	219, 571, 1194, 1219
BstSFI	CTRYAG	2 cut(s)	475, 885
BstSLI	GKGCMC	2 cut(s)	195, 940
BstV1I	GCAGC	2 cut(s)	369, 415
BstX2I	RGATCY	3 cut(s)	575, 799, 1143
BstYI	RGATCY	3 cut(s)	575, 799, 1143
Bsu15I	ATCGAT	1 cut(s)	669
BsuRI	GGCC	4 cut(s)	267, 348, 486, 596
BsuTUI	ATCGAT	1 cut(s)	669
BtsCI	GGATG	7 cut(s)	262, 349, 381, 385, 408, 837, 847
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	176, 908
BveI	ACCTGC	4 cut(s)	648, 685, 705, 735
Cac8I	GCNNGC	4 cut(s)	226, 484, 676, 730
CfoI	GCGC	2 cut(s)	482, 637
Cfr10I	RCCGGY	2 cut(s)	348, 482
Cfr13I	GGNCC	3 cut(s)	485, 871, 1207
ClaI	ATCGAT	1 cut(s)	669
CseI	GACGC	2 cut(s)	426, 1203
Csp6I	GTAC	5 cut(s)	83, 923, 1022, 1096, 1237
CviAII	CATG	3 cut(s)	30, 471, 826
CviQI	GTAC	5 cut(s)	83, 923, 1022, 1096, 1237
DdeI	CTNAG	9 cut(s)	13, 153, 806, 900, 915, 932, 943, 958, 1265
DriI	GACNNNNNGTC	1 cut(s)	391
EaeI	YGGCCR	3 cut(s)	265, 346, 594
Eam1104I	CTCTTC	2 cut(s)	472, 781
Eam1105I	GACNNNNNGTC	1 cut(s)	391
EarI	CTCTTC	2 cut(s)	472, 781
Ecl136II	GAGCTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	816
Eco47I	GGWCC	2 cut(s)	871, 1207
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	1311
Eco88I	CYCGRG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	219, 1194
EcoT38I	GRGCYC	1 cut(s)	207
FaeI	CATG	3 cut(s)	33, 474, 829
FaqI	GGGAC	4 cut(s)	18, 398, 629, 1005
FatI	CATG	3 cut(s)	29, 470, 825
FauI	CCCGC	1 cut(s)	623
Fnu4HI	GCNGC	2 cut(s)	358, 429
FokI	GGATG	7 cut(s)	269, 356, 388, 392, 415, 844, 854
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	2 cut(s)	358, 429
FspBI	CTAG	2 cut(s)	215, 774
GlaI	GCGC	2 cut(s)	481, 636
GluI	GCNGC	2 cut(s)	358, 429
GsaI	CCCAGC	1 cut(s)	609
GsuI	CTGGAG	1 cut(s)	417
HaeII	RGCGCY	2 cut(s)	483, 638
HaeIII	GGCC	4 cut(s)	267, 348, 486, 596
HapII	CCGG	5 cut(s)	349, 483, 573, 597, 1220
HgaI	GACGC	2 cut(s)	426, 1203
HhaI	GCGC	2 cut(s)	482, 637
Hin1I	GRCGYC	1 cut(s)	437
Hin1II	CATG	3 cut(s)	33, 474, 829
Hin6I	GCGC	2 cut(s)	480, 635
HinP1I	GCGC	2 cut(s)	480, 635
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	5 cut(s)	349, 483, 573, 597, 1220
HphI	GGTGA	4 cut(s)	73, 199, 658, 1209
Hpy166II	GTNNAC	2 cut(s)	938, 1166
Hpy188I	TCNGA	9 cut(s)	154, 317, 322, 690, 710, 854, 946, 1266, 1291
Hpy188III	TCNNGA	6 cut(s)	53, 100, 305, 396, 863, 1040
Hpy8I	GTNNAC	2 cut(s)	938, 1166
Hpy99I	CGWCG	1 cut(s)	656
HpyAV	CCTTC	4 cut(s)	832, 1057, 1286, 1291
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 211, 354, 434, 602, 1325
HpyF3I	CTNAG	9 cut(s)	13, 153, 806, 900, 915, 932, 943, 958, 1265
Hsp92I	GRCGYC	1 cut(s)	437
Hsp92II	CATG	3 cut(s)	33, 474, 829
HspAI	GCGC	2 cut(s)	480, 635
KpnI	GGTACC	2 cut(s)	86, 1025
KroI	GCCGGC	1 cut(s)	482
KroNI	GCCGGC	1 cut(s)	484
LmnI	GCTCC	4 cut(s)	202, 307, 505, 954
Lsp1109I	GCAGC	2 cut(s)	369, 415
LweI	GCATC	6 cut(s)	115, 661, 681, 701, 832, 1033
MaeI	CTAG	2 cut(s)	215, 774
MaeIII	GTNAC	3 cut(s)	1120, 1215, 1246
MbiI	CCGCTC	1 cut(s)	310
MboII	GAAGA	6 cut(s)	141, 459, 794, 798, 989, 1291
MflI	RGATCY	3 cut(s)	575, 799, 1143
MhlI	GDGCHC	4 cut(s)	195, 207, 908, 940
MluCI	AATT	2 cut(s)	323, 1185
MmeI	TCCRAC	4 cut(s)	321, 772, 898, 1042
MroNI	GCCGGC	1 cut(s)	482
MseI	TTAA	2 cut(s)	821, 1333
MslI	CAYNNNNRTG	3 cut(s)	830, 968, 1176
MspI	CCGG	5 cut(s)	349, 483, 573, 597, 1220
MspR9I	CCNGG	4 cut(s)	221, 573, 1196, 1221
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	2 cut(s)	221, 1196
MwoI	GCNNNNNNNGC	6 cut(s)	23, 211, 354, 434, 602, 1325
NaeI	GCCGGC	1 cut(s)	484
NciI	CCSGG	2 cut(s)	573, 1221
NgoMIV	GCCGGC	1 cut(s)	482
NlaIII	CATG	3 cut(s)	33, 474, 829
NlaIV	GGNNCC	4 cut(s)	84, 159, 459, 1023
NmeAIII	GCCGAG	1 cut(s)	293
NmuCI	GTSAC	2 cut(s)	1215, 1246
PaqCI	CACCTGC	3 cut(s)	648, 705, 735
PcsI	WCGNNNNNNNCGW	1 cut(s)	675
PctI	GAATGC	1 cut(s)	283
PdiI	GCCGGC	1 cut(s)	484
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	359, 430
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	219, 1194
PspFI	CCCAGC	1 cut(s)	605
PspGI	CCWGG	2 cut(s)	219, 1194
PspN4I	GGNNCC	4 cut(s)	84, 159, 459, 1023
PspPI	GGNCC	3 cut(s)	485, 871, 1207
PsuI	RGATCY	3 cut(s)	575, 799, 1143
RsaI	GTAC	5 cut(s)	84, 924, 1023, 1097, 1238
RsaNI	GTAC	5 cut(s)	83, 923, 1022, 1096, 1237
RseI	CAYNNNNRTG	3 cut(s)	830, 968, 1176
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	821, 1333
SatI	GCNGC	2 cut(s)	358, 429
Sau96I	GGNCC	3 cut(s)	485, 871, 1207
ScaI	AGTACT	1 cut(s)	924
ScrFI	CCNGG	4 cut(s)	221, 573, 1196, 1221
SduI	GDGCHC	4 cut(s)	195, 207, 908, 940
SfaNI	GCATC	6 cut(s)	115, 661, 681, 701, 832, 1033
SfcI	CTRYAG	2 cut(s)	475, 885
SinI	GGWCC	2 cut(s)	871, 1207
SmiMI	CAYNNNNRTG	3 cut(s)	830, 968, 1176
Sse9I	AATT	2 cut(s)	323, 1185
SsiI	CCGC	4 cut(s)	310, 447, 630, 732
SspMI	CTAG	2 cut(s)	215, 774
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	4 cut(s)	219, 571, 1194, 1219
TaqI	TCGA	2 cut(s)	332, 669
TasI	AATT	2 cut(s)	323, 1185
TatI	WGTACW	3 cut(s)	922, 1095, 1236
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	821, 1333
Tru9I	TTAA	2 cut(s)	821, 1333
TscAI	CASTG	2 cut(s)	183, 908
TseFI	GTSAC	2 cut(s)	1215, 1246
TseI	GCWGC	2 cut(s)	357, 428
Tsp45I	GTSAC	2 cut(s)	1215, 1246
TspDTI	ATGAA	4 cut(s)	120, 459, 1039, 1298
TspGWI	ACGGA	3 cut(s)	450, 1026, 1221
TspRI	CASTG	2 cut(s)	183, 908
VneI	GTGCAC	1 cut(s)	936
VpaK11BI	GGWCC	2 cut(s)	871, 1207
XapI	RAATTY	1 cut(s)	323
XspI	CTAG	2 cut(s)	215, 774
ZrmI	AGTACT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.