RLG00000028337

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005550
Physical Location & Seq
Forward (+)
21566805 .. 21569619
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028337

Sequence Viewer

Length: 423 bp
ATGTTGGATGGTCGGTTAGGCAGCAGTGCTTGGCAAGGGATGGATGGGGACAGGCGGTCTGGAGGGATGAGATGGAGGTTTAGCGTGGTTGCTGCTACGGCGTCGATCTGCGGTTCTGGGGTTCCGTTCTCTTCATGCTGTAGCGCCGGCCCGGTGGTAGTCGCTCCAAACCTGTTGGGTCAGGGTTGGGGTTGGGGGATCAGTAGCCCTGGTTTTAGTGGTTTTGCAGAGTTTGAGGTCCCACCAGCGGCACTTGTTGAAGGAGTTGCAGCTGCAACTCTTTTGGAGACTTTTGCAGACTTTGAGCTTGAGGTTCCAGCTTTGACAGTTGGTTCTTCTTCATCACTTTCAGCAGCTACTGCTTTTCCCTTTGCTACATCTGCAACAACTCAAGAAGTAATGACTGAGACATGTAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

14.26

Weight (kDa)

4.34

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 55, 111, 248
AclWI GGATC 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 247
AflIII ACRYGT 1 cut(s) 410
AgsI TTSAA 1 cut(s) 260
AhdI GACNNNNNGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 4 cut(s) 272, 307, 320, 356
AluI AGCT 4 cut(s) 272, 307, 320, 356
Alw26I GTCTC 2 cut(s) 281, 401
AlwI GGATC 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 359
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 5 cut(s) 21, 92, 269, 272, 353
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 2 cut(s) 149, 238
AsuC2I CCSGG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 238
BbvI GCAGC 5 cut(s) 33, 79, 259, 281, 365
BccI CCATC 4 cut(s) 2, 34, 38, 66
BceAI ACGGC 1 cut(s) 114
BciT130I CCWGG 1 cut(s) 210
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 281, 401
BfmI CTRYAG 1 cut(s) 139
BfoI RGCGCY 1 cut(s) 147
BisI GCNGC 6 cut(s) 22, 93, 249, 270, 273, 354
BlsI GCNGC 6 cut(s) 23, 94, 250, 271, 274, 355
Bme1390I CCNGG 2 cut(s) 152, 210
Bme18I GGWCC 1 cut(s) 238
BmeRI GACNNNNNGTC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 149, 238
BmiI GGNNCC 3 cut(s) 123, 240, 315
BmrFI CCNGG 2 cut(s) 152, 210
BpmI CTGGAG 1 cut(s) 81
BpuEI CTTGAG 2 cut(s) 329, 375
BpuMI CCSGG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse118I RCCGGY 1 cut(s) 146
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 4 cut(s) 13, 45, 49, 72
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 396
BseXI GCAGC 5 cut(s) 33, 79, 259, 281, 365
BshFI GGCC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 147, 152
BslFI GGGAC 2 cut(s) 62, 224
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 2 cut(s) 281, 401
BsmFI GGGAC 2 cut(s) 62, 224
BsnI GGCC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 105, 198
BspACI CCGC 3 cut(s) 55, 111, 248
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 397
BspLI GGNNCC 3 cut(s) 123, 240, 315
BspPI GGATC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 2 cut(s) 105, 198
BssNI GRCGYC 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 136
BstACI GRCGYC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 405
BstF5I GGATG 4 cut(s) 13, 45, 49, 72
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 2 cut(s) 108, 201
BstMAI GTCTC 2 cut(s) 281, 401
BstMBI GATC 2 cut(s) 105, 198
BstMWI GCNNNNNNNGC 3 cut(s) 98, 359, 380
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 150, 208
BstSFI CTRYAG 1 cut(s) 139
BstV1I GCAGC 5 cut(s) 33, 79, 259, 281, 365
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 4 cut(s) 13, 45, 49, 72
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 148
CaiI CAGNNNCTG 1 cut(s) 359
CfoI GCGC 1 cut(s) 146
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 149, 238
CseI GACGC 1 cut(s) 90
CviAII CATG 2 cut(s) 135, 411
CviJI RGCY 6 cut(s) 150, 207, 272, 307, 320, 356
CviKI_1 RGCY 6 cut(s) 150, 207, 272, 307, 320, 356
DdeI CTNAG 1 cut(s) 405
DpnI GATC 2 cut(s) 107, 200
DpnII GATC 2 cut(s) 105, 198
DriI GACNNNNNGTC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 136
Eam1105I GACNNNNNGTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 208
FaeI CATG 2 cut(s) 138, 414
FaiI YATR 2 cut(s) 136, 412
FaqI GGGAC 2 cut(s) 62, 224
FatI CATG 2 cut(s) 134, 410
Fnu4HI GCNGC 6 cut(s) 22, 93, 249, 270, 273, 354
FokI GGATG 4 cut(s) 20, 52, 56, 79
Fsp4HI GCNGC 6 cut(s) 22, 93, 249, 270, 273, 354
GlaI GCGC 1 cut(s) 145
GluI GCNGC 6 cut(s) 22, 93, 249, 270, 273, 354
GsuI CTGGAG 1 cut(s) 81
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 1 cut(s) 150
HapII CCGG 2 cut(s) 147, 152
HgaI GACGC 1 cut(s) 90
HhaI GCGC 1 cut(s) 146
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 2 cut(s) 138, 414
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HpaII CCGG 2 cut(s) 147, 152
Hpy188III TCNNGA 2 cut(s) 60, 392
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4V TGCA 5 cut(s) 227, 269, 275, 296, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 359, 380
HpyF3I CTNAG 1 cut(s) 405
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 2 cut(s) 138, 414
HspAI GCGC 1 cut(s) 144
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 2 cut(s) 105, 198
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 5 cut(s) 33, 79, 259, 281, 365
MalI GATC 2 cut(s) 107, 200
MboI GATC 2 cut(s) 105, 198
MboII GAAGA 3 cut(s) 123, 327, 330
MluCI AATT 1 cut(s) 418
MnlI CCTC 4 cut(s) 56, 69, 229, 304
MroNI GCCGGC 1 cut(s) 146
MseI TTAA 1 cut(s) 421
MspA1I CMGCKG 2 cut(s) 248, 272
MspI CCGG 2 cut(s) 147, 152
MspR9I CCNGG 2 cut(s) 152, 210
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 3 cut(s) 98, 359, 380
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 1 cut(s) 152
NdeII GATC 2 cut(s) 105, 198
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 138, 414
NlaIV GGNNCC 3 cut(s) 123, 240, 315
NspI RCATGY 1 cut(s) 414
PciI ACATGT 1 cut(s) 410
PdiI GCCGGC 1 cut(s) 148
PkrI GCNGC 6 cut(s) 23, 94, 250, 271, 274, 355
PpuMI RGGWCCY 1 cut(s) 238
PscI ACATGT 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 3 cut(s) 123, 240, 315
PspPI GGNCC 2 cut(s) 149, 238
PspPPI RGGWCCY 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 359
PvuII CAGCTG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 421
SatI GCNGC 6 cut(s) 22, 93, 249, 270, 273, 354
Sau3AI GATC 2 cut(s) 105, 198
Sau96I GGNCC 2 cut(s) 149, 238
ScrFI CCNGG 2 cut(s) 152, 210
SetI ASST 8 cut(s) 80, 174, 240, 274, 309, 315, 322, 358
SfcI CTRYAG 1 cut(s) 139
SinI GGWCC 1 cut(s) 238
SmlI CTYRAG 2 cut(s) 308, 390
SmoI CTYRAG 2 cut(s) 308, 390
Sse9I AATT 1 cut(s) 418
SsiI CCGC 3 cut(s) 55, 111, 248
StyD4I CCNGG 2 cut(s) 150, 208
TaaI ACNGT 1 cut(s) 328
TaqI TCGA 1 cut(s) 104
TasI AATT 1 cut(s) 418
TauI GCSGC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 421
Tru9I TTAA 1 cut(s) 421
TscAI CASTG 1 cut(s) 31
TseI GCWGC 5 cut(s) 21, 92, 269, 272, 353
TspDTI ATGAA 2 cut(s) 123, 330
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 238
XceI RCATGY 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.