Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Forward (+)

27274158 .. 27275773

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028739

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGATGGGGACATGCGGTTTGGAGGGATGAGGTGGAGGTCGGTTGGCGATCTGACTGTTAGGGTGGCTGGGCTCTGGATGAAGGCCAGGACAAGGCAGAGGCCCAAAGCCACAAGGCCTGCCCAGCAAAGTGGCAGGTGTGCCCCACTGAATTCAAGGCCCAGAAGCACCTTGCCAGGCTTAGAAGGCTGCCAATGGGCTGACTGCATTAGGCTACCTAGAAGGCCCACTATTAGCCAGAAGCTCAGGCCTAAGCCGCAGACTATGCCAACAGTTATATGGGCCAAGCAAGAAGCACAGAGGCCCAAGCCGCCGTTAGCGCGCCATGTGTCGTCACCCATGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

13.1

Weight (kDa)

11.91

Isoelectric Point (pI)

68.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	126
Acc36I	ACCTGC	1 cut(s)	126
AccII	CGCG	1 cut(s)	322
AciI	CCGC	3 cut(s)	16, 257, 311
AcsI	RAATTY	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	156
AjnI	CCWGG	2 cut(s)	86, 175
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
AoxI	GGCC	8 cut(s)	84, 101, 116, 158, 224, 248, 282, 302
ApeKI	GCWGC	1 cut(s)	189
ApoI	RAATTY	1 cut(s)	151
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AspLEI	GCGC	3 cut(s)	322, 324, 345
AspS9I	GGNCC	5 cut(s)	102, 159, 225, 282, 303
AsuHPI	GGTGA	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	298
BciT130I	CCWGG	2 cut(s)	88, 177
BfaI	CTAG	2 cut(s)	219, 346
BfuAI	ACCTGC	1 cut(s)	126
BisI	GCNGC	3 cut(s)	190, 257, 311
BlsI	GCNGC	3 cut(s)	191, 258, 312
Bme1390I	CCNGG	2 cut(s)	88, 177
BmgT120I	GGNCC	5 cut(s)	102, 159, 225, 282, 303
BmrFI	CCNGG	2 cut(s)	88, 177
Bpu10I	CCTNAGC	2 cut(s)	245, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	88, 177
BseGI	GGATG	3 cut(s)	10, 33, 84
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	259
BsePI	GCGCGC	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	176
BseYI	CCCAGC	2 cut(s)	68, 123
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	8 cut(s)	86, 103, 118, 160, 226, 250, 284, 304
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	8 cut(s)	86, 103, 118, 160, 226, 250, 284, 304
Bsp1286I	GDGCHC	2 cut(s)	75, 145
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	3 cut(s)	16, 257, 311
BspANI	GGCC	8 cut(s)	86, 103, 118, 160, 226, 250, 284, 304
BspCNI	CTCAG	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	322
BspMI	ACCTGC	1 cut(s)	126
BssHII	GCGCGC	1 cut(s)	320
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	2 cut(s)	88, 177
Bst4CI	ACNGT	2 cut(s)	58, 274
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	120, 322
BstDEI	CTNAG	3 cut(s)	181, 245, 252
BstF5I	GGATG	3 cut(s)	10, 33, 84
BstFNI	CGCG	1 cut(s)	322
BstHHI	GCGC	3 cut(s)	322, 324, 345
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	6 cut(s)	124, 186, 256, 265, 310, 319
BstNI	CCWGG	2 cut(s)	88, 177
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	86, 175
BstSLI	GKGCMC	1 cut(s)	145
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	176
BstXI	CCANNNNNNTGG	1 cut(s)	131
BsuRI	GGCC	8 cut(s)	86, 103, 118, 160, 226, 250, 284, 304
BtsCI	GGATG	3 cut(s)	10, 33, 84
BtsIMutI	CAGTG	1 cut(s)	146
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	120, 322
CfoI	GCGC	3 cut(s)	322, 324, 345
Cfr13I	GGNCC	5 cut(s)	102, 159, 225, 282, 303
CviAII	CATG	3 cut(s)	13, 326, 340
DdeI	CTNAG	3 cut(s)	181, 245, 252
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eco147I	AGGCCT	2 cut(s)	118, 250
Eco24I	GRGCYC	1 cut(s)	75
EcoRI	GAATTC	1 cut(s)	151
EcoRII	CCWGG	2 cut(s)	86, 175
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	3 cut(s)	16, 329, 343
FaiI	YATR	6 cut(s)	14, 266, 278, 280, 327, 341
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	3 cut(s)	12, 325, 339
Fnu4HI	GCNGC	3 cut(s)	190, 257, 311
FokI	GGATG	3 cut(s)	17, 40, 91
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	3 cut(s)	190, 257, 311
FspBI	CTAG	2 cut(s)	219, 346
GlaI	GCGC	3 cut(s)	321, 323, 344
GluI	GCNGC	3 cut(s)	190, 257, 311
GsaI	CCCAGC	2 cut(s)	72, 127
HaeIII	GGCC	8 cut(s)	86, 103, 118, 160, 226, 250, 284, 304
HhaI	GCGC	3 cut(s)	322, 324, 345
Hin1II	CATG	3 cut(s)	16, 329, 343
Hin6I	GCGC	3 cut(s)	320, 322, 343
HinP1I	GCGC	3 cut(s)	320, 322, 343
HphI	GGTGA	1 cut(s)	327
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	1 cut(s)	76
HpyAV	CCTTC	3 cut(s)	76, 179, 216
HpyCH4III	ACNGT	2 cut(s)	58, 274
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	6 cut(s)	124, 186, 256, 265, 310, 319
HpyF3I	CTNAG	3 cut(s)	181, 245, 252
Hsp92II	CATG	3 cut(s)	16, 329, 343
HspAI	GCGC	3 cut(s)	320, 322, 343
Kzo9I	GATC	1 cut(s)	49
Lsp1109I	GCAGC	1 cut(s)	176
MaeI	CTAG	2 cut(s)	219, 346
MaeIII	GTNAC	1 cut(s)	333
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	75, 145
MluCI	AATT	1 cut(s)	151
MnlI	CCTC	5 cut(s)	17, 24, 30, 93, 294
MspR9I	CCNGG	2 cut(s)	88, 177
MvaI	CCWGG	2 cut(s)	88, 177
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	6 cut(s)	124, 186, 256, 265, 310, 319
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	3 cut(s)	16, 329, 343
NmuCI	GTSAC	1 cut(s)	333
NspI	RCATGY	1 cut(s)	16
PaqCI	CACCTGC	1 cut(s)	126
PauI	GCGCGC	1 cut(s)	320
PceI	AGGCCT	2 cut(s)	118, 250
PkrI	GCNGC	3 cut(s)	191, 258, 312
Psp6I	CCWGG	2 cut(s)	86, 175
PspFI	CCCAGC	2 cut(s)	68, 123
PspGI	CCWGG	2 cut(s)	86, 175
PspPI	GGNCC	5 cut(s)	102, 159, 225, 282, 303
PteI	GCGCGC	1 cut(s)	320
SatI	GCNGC	3 cut(s)	190, 257, 311
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	5 cut(s)	102, 159, 225, 282, 303
ScrFI	CCNGG	2 cut(s)	88, 177
SduI	GDGCHC	2 cut(s)	75, 145
SetI	ASST	6 cut(s)	35, 41, 140, 173, 220, 246
Sse9I	AATT	1 cut(s)	151
SseBI	AGGCCT	2 cut(s)	118, 250
SsiI	CCGC	3 cut(s)	16, 257, 311
SspMI	CTAG	2 cut(s)	219, 346
StuI	AGGCCT	2 cut(s)	118, 250
StyD4I	CCNGG	2 cut(s)	86, 175
TaaI	ACNGT	2 cut(s)	58, 274
TasI	AATT	1 cut(s)	151
TauI	GCSGC	2 cut(s)	259, 313
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	153
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
XspI	CTAG	2 cut(s)	219, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.