Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Reverse (-)

43418892 .. 43424431

Gene Structure 5540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013874

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCTCCCTCACCAGCACTACATTGGGAAGCACACTAAGAACCTTCCTCTCCGAATCGTAATCCCTAAGGTTGAGGATGCTATGACAAAAGAAGTTCAAAAGGGAATTGTGGCCGTTGTTGGTATGAATGATATTTTGATACAAGCTTTGGAGAAACCTGAGCAATCAGGCCATATAAGAGGTGCTGGAGCATTTGTTACACACAAAGTATACTTCAATACATCTAGGTTGAGTGTCTTAGAAGGCCGATTAGGCAACAGCGCTTGGCAAGGGGTGGATGGGGACAGGCGGTTTGGAGGGATGCGATGGAGGTTTAGCGTTGTTGCAGATACGATGTCGATTTGTGGTTCTGGGGTTTCGTCCTGTTCATTGGAGTTTTGGCTGCTTAGGTTCAGATCGGTGGGCGATCTGACTGTTAGGGTGGCTGGGCTCTGGACGGAGAACGGGACGAAGCAGAGGCACGGTGATGGTGACCCTGTGGTTAAGGCGGCGCTAGTGGGGTTGTGGTGTCGATGGATTGGGCTGGAACCCTTTTTCCTTGCTGGGCCTAAGGGTTATTGGGCCGGGGCTTGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

193

Amino Acids

21.14

Weight (kDa)

9.47

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	2 cut(s)	289, 488
AcoI	YGGCCR	1 cut(s)	111
AfeI	AGCGCT	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	98, 217
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Aor51HI	AGCGCT	1 cut(s)	262
AoxI	GGCC	5 cut(s)	111, 169, 244, 545, 561
ApeKI	GCWGC	1 cut(s)	382
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AspLEI	GCGC	2 cut(s)	263, 493
AspS9I	GGNCC	2 cut(s)	545, 561
AsuC2I	CCSGG	1 cut(s)	565
AsuHPI	GGTGA	2 cut(s)	476, 482
AxyI	CCTNAGG	2 cut(s)	66, 549
BanII	GRGCYC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	369
BccI	CCATC	4 cut(s)	272, 300, 461, 507
BceAI	ACGGC	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	565
BfaI	CTAG	2 cut(s)	225, 494
BfoI	RGCGCY	2 cut(s)	264, 494
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	2 cut(s)	383, 489
BlsI	GCNGC	2 cut(s)	384, 490
Bme1390I	CCNGG	1 cut(s)	565
BmgT120I	GGNCC	2 cut(s)	545, 561
BmiI	GGNNCC	1 cut(s)	528
BmrFI	CCNGG	1 cut(s)	565
BmsI	GCATC	2 cut(s)	67, 291
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	2 cut(s)	159, 386
BpuMI	CCSGG	1 cut(s)	565
BsaJI	CCNNGG	1 cut(s)	564
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bse21I	CCTNAGG	2 cut(s)	66, 549
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	3 cut(s)	82, 283, 306
BseMII	CTCAG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	369
BseYI	CCCAGC	2 cut(s)	425, 542
BshFI	GGCC	5 cut(s)	113, 171, 246, 547, 563
BsiSI	CCGG	1 cut(s)	564
BslFI	GGGAC	2 cut(s)	296, 460
BsmFI	GGGAC	2 cut(s)	296, 460
BsnI	GGCC	5 cut(s)	113, 171, 246, 547, 563
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	395, 406
BspACI	CCGC	2 cut(s)	289, 488
BspANI	GGCC	5 cut(s)	113, 171, 246, 547, 563
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	528
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	2 cut(s)	395, 406
BssNAI	GTATAC	1 cut(s)	211
Bst1107I	GTATAC	1 cut(s)	211
Bst4CI	ACNGT	2 cut(s)	415, 464
BstDEI	CTNAG	7 cut(s)	36, 66, 159, 238, 386, 549, 576
BstEII	GGTNACC	1 cut(s)	470
BstF5I	GGATG	3 cut(s)	82, 283, 306
BstH2I	RGCGCY	2 cut(s)	264, 494
BstHHI	GCGC	2 cut(s)	263, 493
BstKTI	GATC	2 cut(s)	398, 409
BstMBI	GATC	2 cut(s)	395, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	563
BstV1I	GCAGC	1 cut(s)	369
BstZ17I	GTATAC	1 cut(s)	211
Bsu36I	CCTNAGG	2 cut(s)	66, 549
BsuRI	GGCC	5 cut(s)	113, 171, 246, 547, 563
BtgZI	GCGATG	1 cut(s)	319
BtsCI	GGATG	3 cut(s)	82, 283, 306
CfoI	GCGC	2 cut(s)	263, 493
Cfr13I	GGNCC	2 cut(s)	545, 561
DdeI	CTNAG	7 cut(s)	36, 66, 159, 238, 386, 549, 576
DpnI	GATC	2 cut(s)	397, 408
DpnII	GATC	2 cut(s)	395, 406
EaeI	YGGCCR	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	432
Eco47III	AGCGCT	1 cut(s)	262
Eco81I	CCTNAGG	2 cut(s)	66, 549
Eco91I	GGTNACC	1 cut(s)	470
EcoO65I	GGTNACC	1 cut(s)	470
EcoT38I	GRGCYC	1 cut(s)	432
FaiI	YATR	5 cut(s)	83, 125, 174, 176, 211
FaqI	GGGAC	2 cut(s)	296, 460
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	383, 489
FokI	GGATG	3 cut(s)	89, 290, 313
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	2 cut(s)	383, 489
FspBI	CTAG	2 cut(s)	225, 494
GlaI	GCGC	2 cut(s)	262, 492
GluI	GCNGC	2 cut(s)	383, 489
GsaI	CCCAGC	2 cut(s)	429, 546
GsuI	CTGGAG	1 cut(s)	207
HaeII	RGCGCY	2 cut(s)	264, 494
HaeIII	GGCC	5 cut(s)	113, 171, 246, 547, 563
HapII	CCGG	1 cut(s)	564
HhaI	GCGC	2 cut(s)	263, 493
Hin6I	GCGC	2 cut(s)	261, 491
HinP1I	GCGC	2 cut(s)	261, 491
HindIII	AAGCTT	1 cut(s)	144
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	1 cut(s)	564
HphI	GGTGA	2 cut(s)	476, 482
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	53, 395, 411
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	53, 236
HpyCH4III	ACNGT	2 cut(s)	415, 464
HpyCH4V	TGCA	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	7 cut(s)	36, 66, 159, 238, 386, 549, 576
HspAI	GCGC	2 cut(s)	261, 491
Kzo9I	GATC	2 cut(s)	395, 406
LmnI	GCTCC	2 cut(s)	9, 188
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	2 cut(s)	67, 291
MaeI	CTAG	2 cut(s)	225, 494
MaeIII	GTNAC	2 cut(s)	196, 470
MalI	GATC	2 cut(s)	397, 408
MboI	GATC	2 cut(s)	395, 406
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	1 cut(s)	105
MnlI	CCTC	7 cut(s)	18, 57, 67, 173, 290, 303, 450
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	465
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	1 cut(s)	565
MwoI	GCNNNNNNNGC	1 cut(s)	252
NciI	CCSGG	1 cut(s)	565
NdeII	GATC	2 cut(s)	395, 406
NlaIV	GGNNCC	1 cut(s)	528
NmuCI	GTSAC	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	384, 490
PspEI	GGTNACC	1 cut(s)	470
PspFI	CCCAGC	2 cut(s)	425, 542
PspN4I	GGNNCC	1 cut(s)	528
PspPI	GGNCC	2 cut(s)	545, 561
RseI	CAYNNNNRTG	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	2 cut(s)	383, 489
Sau3AI	GATC	2 cut(s)	395, 406
Sau96I	GGNCC	2 cut(s)	545, 561
ScrFI	CCNGG	1 cut(s)	565
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	8 cut(s)	45, 72, 148, 160, 184, 230, 314, 392
SfaNI	GCATC	2 cut(s)	67, 291
SmiMI	CAYNNNNRTG	1 cut(s)	465
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	2 cut(s)	289, 488
SspMI	CTAG	2 cut(s)	225, 494
StyD4I	CCNGG	1 cut(s)	563
TaaI	ACNGT	2 cut(s)	415, 464
TaqI	TCGA	2 cut(s)	338, 511
TasI	AATT	1 cut(s)	105
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	2 cut(s)	140, 357
TspGWI	ACGGA	1 cut(s)	452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	2 cut(s)	225, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.