RLG00000025787

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0005550
Physical Location & Seq
Reverse (-)
48279174 .. 48279578
405 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025787

Sequence Viewer

Length: 315 bp
ATGTTTCTGTCATATGGCAAGGATGGTGGTGGCCAGGTTTGGGTCGCTGTTGAGGCTGAATCACTCAATCCCGATCGGATCCGATCTGATCTCACGTTGAGTGGGTTGGACGATAGGATAGGCAGCAGTGCTTGGCAAGGGATGGATGGGGCCAGGAGGTTTGAAGGGATGAGATCGGTTGGCCATCTGCCTGTTAGGGTGGCTGGGCTCTGGACGAAGGTCGGGACAAGGCAGAGGAGCGGTGGTGGCGATGTTAGTAGGGCTGTGATGTCGCTGGATTGGGCTGGAATCCTGTTTGTTCCTTGCTGGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.24

Weight (kDa)

7.96

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 240
AciI CCGC 1 cut(s) 240
AclWI GGATC 2 cut(s) 73, 86
AcoI YGGCCR 2 cut(s) 31, 181
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 1 cut(s) 164
AjnI CCWGG 2 cut(s) 33, 152
AlwI GGATC 2 cut(s) 73, 86
AoxI GGCC 4 cut(s) 31, 150, 181, 309
ApeKI GCWGC 1 cut(s) 123
AspS9I GGNCC 2 cut(s) 150, 309
BalI TGGCCA 2 cut(s) 33, 183
BamHI GGATCC 1 cut(s) 78
BanII GRGCYC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 135
BccI CCATC 4 cut(s) 17, 136, 140, 192
BciT130I CCWGG 2 cut(s) 35, 154
BfaI CTAG 1 cut(s) 313
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme1390I CCNGG 2 cut(s) 35, 154
BmgT120I GGNCC 2 cut(s) 150, 309
BmiI GGNNCC 2 cut(s) 80, 151
BmrFI CCNGG 2 cut(s) 35, 154
BoxI GACNNNNGTC 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 40
BseBI CCWGG 2 cut(s) 35, 154
BseGI GGATG 4 cut(s) 28, 147, 151, 174
BseLI CCNNNNNNNGG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 135
BseYI CCCAGC 2 cut(s) 203, 306
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 4 cut(s) 33, 152, 183, 311
BsiEI CGRYCG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 4 cut(s) 33, 152, 183, 311
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 5 cut(s) 73, 78, 83, 88, 173
BspACI CCGC 1 cut(s) 240
BspANI GGCC 4 cut(s) 33, 152, 183, 311
BspLI GGNNCC 2 cut(s) 80, 151
BspPI GGATC 2 cut(s) 73, 86
BsrBI CCGCTC 1 cut(s) 240
BssMI GATC 5 cut(s) 73, 78, 83, 88, 173
Bst2UI CCWGG 2 cut(s) 35, 154
BstF5I GGATG 4 cut(s) 28, 147, 151, 174
BstKTI GATC 5 cut(s) 76, 81, 86, 91, 176
BstMBI GATC 5 cut(s) 73, 78, 83, 88, 173
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 53, 246
BstNI CCWGG 2 cut(s) 35, 154
BstPAI GACNNNNGTC 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 33, 152
BstV1I GCAGC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 4 cut(s) 33, 152, 183, 311
BtgZI GCGATG 1 cut(s) 264
BtsCI GGATG 4 cut(s) 28, 147, 151, 174
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
Cfr13I GGNCC 2 cut(s) 150, 309
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviJI RGCY 9 cut(s) 33, 56, 152, 183, 203, 208, 263, 284, 311
CviKI_1 RGCY 9 cut(s) 33, 56, 152, 183, 203, 208, 263, 284, 311
DpnI GATC 5 cut(s) 75, 80, 85, 90, 175
DpnII GATC 5 cut(s) 73, 78, 83, 88, 173
EaeI YGGCCR 2 cut(s) 31, 181
Eco24I GRGCYC 1 cut(s) 210
EcoRII CCWGG 2 cut(s) 33, 152
EcoT38I GRGCYC 1 cut(s) 210
FaiI YATR 2 cut(s) 13, 15
FaqI GGGAC 1 cut(s) 238
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 124
FokI GGATG 4 cut(s) 35, 154, 158, 181
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 1 cut(s) 313
GluI GCNGC 1 cut(s) 124
GsaI CCCAGC 2 cut(s) 207, 310
HaeIII GGCC 4 cut(s) 33, 152, 183, 311
HinfI GANTC 2 cut(s) 59, 288
Hpy188I TCNGA 3 cut(s) 78, 83, 88
Hpy188III TCNNGA 3 cut(s) 71, 211, 223
HpyAV CCTTC 2 cut(s) 158, 211
HpyCH4IV ACGT 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 246
HpySE526I ACGT 1 cut(s) 95
Kzo9I GATC 5 cut(s) 73, 78, 83, 88, 173
LmnI GCTCC 1 cut(s) 237
Lsp1109I GCAGC 1 cut(s) 135
MaeI CTAG 1 cut(s) 313
MaeII ACGT 1 cut(s) 95
MalI GATC 5 cut(s) 75, 80, 85, 90, 175
MbiI CCGCTC 1 cut(s) 240
MboI GATC 5 cut(s) 73, 78, 83, 88, 173
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 210
MlsI TGGCCA 2 cut(s) 33, 183
MluNI TGGCCA 2 cut(s) 33, 183
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 3 cut(s) 46, 150, 228
Mox20I TGGCCA 2 cut(s) 33, 183
MscI TGGCCA 2 cut(s) 33, 183
Msp20I TGGCCA 2 cut(s) 33, 183
MspR9I CCNGG 2 cut(s) 35, 154
MvaI CCWGG 2 cut(s) 35, 154
MwoI GCNNNNNNNGC 2 cut(s) 53, 246
NdeI CATATG 1 cut(s) 13
NdeII GATC 5 cut(s) 73, 78, 83, 88, 173
NlaIV GGNNCC 2 cut(s) 80, 151
PfeI GAWTC 2 cut(s) 59, 288
PkrI GCNGC 1 cut(s) 125
Ple19I CGATCG 1 cut(s) 76
PshAI GACNNNNGTC 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 33, 152
PspFI CCCAGC 2 cut(s) 203, 306
PspGI CCWGG 2 cut(s) 33, 152
PspN4I GGNNCC 2 cut(s) 80, 151
PspPI GGNCC 2 cut(s) 150, 309
PsuI RGATCY 1 cut(s) 78
PvuI CGATCG 1 cut(s) 76
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 5 cut(s) 73, 78, 83, 88, 173
Sau96I GGNCC 2 cut(s) 150, 309
ScrFI CCNGG 2 cut(s) 35, 154
SduI GDGCHC 1 cut(s) 210
SetI ASST 4 cut(s) 39, 98, 161, 222
SsiI CCGC 1 cut(s) 240
SspMI CTAG 1 cut(s) 313
StyD4I CCNGG 2 cut(s) 33, 152
TaiI ACGT 1 cut(s) 98
TfiI GAWTC 2 cut(s) 59, 288
TscAI CASTG 1 cut(s) 133
TseI GCWGC 1 cut(s) 123
TspRI CASTG 1 cut(s) 133
XspI CTAG 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.