Rh4AG195800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005550
Physical Location & Seq
Forward (+)
48027492 .. 48029327
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG195800.1

Sequence Viewer

Length: 324 bp
ATGGCCAACTTTTCTTTCTACTTGCTCGTGGTCCTCGTGGTATTTACTTCAGTGAGATGGGTGAGTGGCGAGGTGTGTCACCTAGCTGTAGATAATGGTGGTTGTCCTGATGAACATGAGTGTTTAATAACATGTAGTACTTGTTACCGGAACATTGGGACTGTCTCTTCCTACTGTGACGCTGTAGCTACGCCAGTTCCGATTATACAATGTGTGTGTGTGATGGCTAATGGTGCCCCTTGCAGTCCTCCTGGTAAACCAAAGTGCCCTAACTGGCCTCGGTCTCCTCCTGCTAGTTTCGCCATGAACAACACTACCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.43

Weight (kDa)

6.0

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 1 cut(s) 139
AflIII ACRYGT 1 cut(s) 131
AjnI CCWGG 1 cut(s) 250
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 317
AluBI AGCT 2 cut(s) 86, 188
AluI AGCT 2 cut(s) 86, 188
Alw26I GTCTC 2 cut(s) 169, 288
AoxI GGCC 2 cut(s) 3, 275
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 2 cut(s) 71, 73
AvaII GGWCC 1 cut(s) 31
BaeGI GKGCMC 2 cut(s) 238, 269
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 233
BauI CACGAG 2 cut(s) 26, 35
BccI CCATC 2 cut(s) 51, 217
BciT130I CCWGG 1 cut(s) 252
BcoDI GTCTC 2 cut(s) 169, 288
BfaI CTAG 2 cut(s) 83, 294
BfmI CTRYAG 2 cut(s) 87, 183
BmcAI AGTACT 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 278
BsaWI WCCGGW 1 cut(s) 147
Bse1I ACTGG 2 cut(s) 194, 278
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 278
BseNI ACTGG 2 cut(s) 194, 278
BseRI GAGGAG 1 cut(s) 276
BseSI GKGCMC 2 cut(s) 238, 269
BshFI GGCC 2 cut(s) 5, 277
BshNI GGYRCC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 172
BsmAI GTCTC 2 cut(s) 169, 288
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 2 cut(s) 5, 277
Bso31I GGTCTC 1 cut(s) 288
Bsp1286I GDGCHC 2 cut(s) 238, 269
BspANI GGCC 2 cut(s) 5, 277
BspLI GGNNCC 1 cut(s) 235
BspT107I GGYRCC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 288
BsrI ACTGG 2 cut(s) 194, 278
BssECI CCNNGG 1 cut(s) 278
BssSI CACGAG 2 cut(s) 26, 35
Bst2BI CACGAG 2 cut(s) 26, 35
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 3 cut(s) 163, 176, 319
Bst6I CTCTTC 1 cut(s) 172
BstMAI GTCTC 2 cut(s) 169, 288
BstMWI GCNNNNNNNGC 2 cut(s) 233, 299
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 2 cut(s) 87, 183
BstSLI GKGCMC 2 cut(s) 238, 269
BsuRI GGCC 2 cut(s) 5, 277
BtsIMutI CAGTG 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 31
CseI GACGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 138
CviAII CATG 3 cut(s) 116, 132, 304
CviJI RGCY 5 cut(s) 5, 86, 188, 227, 277
CviKI_1 RGCY 5 cut(s) 5, 86, 188, 227, 277
CviQI GTAC 1 cut(s) 138
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 119, 135, 307
FaiI YATR 4 cut(s) 117, 133, 206, 305
FaqI GGGAC 1 cut(s) 172
FatI CATG 3 cut(s) 115, 131, 303
FspBI CTAG 2 cut(s) 83, 294
HaeIII GGCC 2 cut(s) 5, 277
HapII CCGG 1 cut(s) 148
HgaI GACGC 1 cut(s) 188
Hin1II CATG 3 cut(s) 119, 135, 307
HpaII CCGG 1 cut(s) 148
HphI GGTGA 2 cut(s) 71, 73
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 257
HpyCH4III ACNGT 3 cut(s) 163, 176, 319
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 299
Hsp92II CATG 3 cut(s) 119, 135, 307
LpnPI CCDG 7 cut(s) 120, 161, 207, 237, 259, 264, 303
MaeI CTAG 2 cut(s) 83, 294
MaeIII GTNAC 3 cut(s) 77, 143, 176
MboII GAAGA 1 cut(s) 159
MhlI GDGCHC 2 cut(s) 238, 269
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 44, 64, 258, 288, 297
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 233, 299
NlaIII CATG 3 cut(s) 119, 135, 307
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 2 cut(s) 77, 176
NspI RCATGY 1 cut(s) 135
OliI CACNNNNGTG 1 cut(s) 317
PciI ACATGT 1 cut(s) 131
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 197
PscI ACATGT 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 31
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 1 cut(s) 125
Sau96I GGNCC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 2 cut(s) 238, 269
SetI ASST 4 cut(s) 75, 84, 88, 190
SfcI CTRYAG 2 cut(s) 87, 183
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 317
SspMI CTAG 2 cut(s) 83, 294
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 3 cut(s) 163, 176, 319
TaqII GACCGA 1 cut(s) 270
TatI WGTACW 1 cut(s) 137
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 2 cut(s) 77, 176
Tsp45I GTSAC 2 cut(s) 77, 176
TspDTI ATGAA 2 cut(s) 126, 320
TspRI CASTG 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 31
XceI RCATGY 1 cut(s) 135
XspI CTAG 2 cut(s) 83, 294
ZrmI AGTACT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.