Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Reverse (-)

55046943 .. 55047380

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034814

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGATTCTCTCAGATGGTGAGCATGGGGCTGACCGAGTGTTGGCCGTTGTTGTCGAGATGGAACCACTCGATCCCAATCGGATCCGTTCTGATATGGGGTTGAGTGTGTTGGAGGATGGAATAGGCAGCATGGCTTGGCAGGGCATGGCAGGGGACAGGCGGTCTGGAGGGATGAGGTGGAGGATTTGCGTCGTTGTGGCCATGGCGTCGTTCTGTGGTTCTAGTGATTCGACGGAGATCGGGTCACGGCAGAGGCGCGGTGATGGTGGTGTTGTGGTGGCGGCGGTGTTGGTATGGTTGTGGTGTAGTTGGTTTTGGCTGGGCCTGGTGCTTCCTGGGCCTGGGCTTGGGCTCTGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.95

Weight (kDa)

4.96

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	258
AciI	CCGC	4 cut(s)	160, 258, 281, 284
AclWI	GGATC	3 cut(s)	65, 76, 89
AcoI	YGGCCR	2 cut(s)	42, 198
AcyI	GRCGYC	1 cut(s)	206
AfiI	CCNNNNNNNGG	3 cut(s)	40, 341, 347
AhdI	GACNNNNNGTC	1 cut(s)	160
AjnI	CCWGG	3 cut(s)	324, 334, 340
AlwI	GGATC	3 cut(s)	65, 76, 89
AoxI	GGCC	4 cut(s)	42, 198, 322, 338
ApeKI	GCWGC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	322, 338
AsuHPI	GGTGA	2 cut(s)	29, 272
BalI	TGGCCA	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	4 cut(s)	8, 52, 110, 257
BceAI	ACGGC	2 cut(s)	29, 263
BciT130I	CCWGG	3 cut(s)	326, 336, 342
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	2 cut(s)	127, 282
BlsI	GCNGC	2 cut(s)	128, 283
Bme1390I	CCNGG	3 cut(s)	326, 336, 342
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	322, 338
BmiI	GGNNCC	2 cut(s)	63, 83
BmrFI	CCNGG	3 cut(s)	326, 336, 342
BpmI	CTGGAG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	201, 335, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 341, 347
Bse8I	GATNNNNATC	1 cut(s)	75
BseBI	CCWGG	3 cut(s)	326, 336, 342
BseDI	CCNNGG	3 cut(s)	201, 335, 341
BseGI	GGATG	2 cut(s)	121, 177
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	3 cut(s)	40, 341, 347
BseMII	CTCAG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	138
BseYI	CCCAGC	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	4 cut(s)	44, 200, 324, 340
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	40, 341, 347
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	4 cut(s)	44, 200, 324, 340
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	70, 81, 237
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	4 cut(s)	160, 258, 281, 284
BspANI	GGCC	4 cut(s)	44, 200, 324, 340
BspCNI	CTCAG	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	63, 83
BspPI	GGATC	3 cut(s)	65, 76, 89
BssECI	CCNNGG	3 cut(s)	201, 335, 341
BssMI	GATC	3 cut(s)	70, 81, 237
BssNI	GRCGYC	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	3 cut(s)	326, 336, 342
BstACI	GRCGYC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	10
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	121, 177
BstFNI	CGCG	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	3 cut(s)	73, 84, 240
BstMBI	GATC	3 cut(s)	70, 81, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNI	CCWGG	3 cut(s)	326, 336, 342
BstSCI	CCNGG	3 cut(s)	324, 334, 340
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	4 cut(s)	44, 200, 324, 340
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	121, 177
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	322, 338
CseI	GACGC	2 cut(s)	178, 195
CviAII	CATG	4 cut(s)	23, 130, 145, 202
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	3 cut(s)	72, 83, 239
DpnII	GATC	3 cut(s)	70, 81, 237
DriI	GACNNNNNGTC	1 cut(s)	160
EaeI	YGGCCR	2 cut(s)	42, 198
Eam1105I	GACNNNNNGTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	354
EcoRII	CCWGG	3 cut(s)	324, 334, 340
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	4 cut(s)	26, 133, 148, 205
FaiI	YATR	6 cut(s)	24, 95, 131, 146, 203, 295
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	4 cut(s)	22, 129, 144, 201
Fnu4HI	GCNGC	2 cut(s)	127, 282
FokI	GGATG	2 cut(s)	128, 184
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	127, 282
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	2 cut(s)	127, 282
GsaI	CCCAGC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	4 cut(s)	44, 200, 324, 340
HgaI	GACGC	2 cut(s)	178, 195
HhaI	GCGC	1 cut(s)	258
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	4 cut(s)	26, 133, 148, 205
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	4, 227
HphI	GGTGA	2 cut(s)	29, 272
Hpy188I	TCNGA	3 cut(s)	13, 81, 91
Hpy188III	TCNNGA	2 cut(s)	55, 165
Hpy99I	CGWCG	3 cut(s)	194, 211, 235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	1 cut(s)	10
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	4 cut(s)	26, 133, 148, 205
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	70, 81, 237
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	3 cut(s)	72, 83, 239
MboI	GATC	3 cut(s)	70, 81, 237
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	354
MlsI	TGGCCA	1 cut(s)	200
MluNI	TGGCCA	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	5 cut(s)	106, 161, 168, 174, 246
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	1 cut(s)	361
Msp20I	TGGCCA	1 cut(s)	200
MspR9I	CCNGG	3 cut(s)	326, 336, 342
MvaI	CCWGG	3 cut(s)	326, 336, 342
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	337
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	3 cut(s)	70, 81, 237
NlaIII	CATG	4 cut(s)	26, 133, 148, 205
NlaIV	GGNNCC	2 cut(s)	63, 83
NmuCI	GTSAC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	4, 227
PkrI	GCNGC	2 cut(s)	128, 283
Psp6I	CCWGG	3 cut(s)	324, 334, 340
PspFI	CCCAGC	1 cut(s)	319
PspGI	CCWGG	3 cut(s)	324, 334, 340
PspN4I	GGNNCC	2 cut(s)	63, 83
PspPI	GGNCC	2 cut(s)	322, 338
PsuI	RGATCY	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	361
SatI	GCNGC	2 cut(s)	127, 282
Sau3AI	GATC	3 cut(s)	70, 81, 237
Sau96I	GGNCC	2 cut(s)	322, 338
ScrFI	CCNGG	3 cut(s)	326, 336, 342
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	1 cut(s)	179
SsiI	CCGC	4 cut(s)	160, 258, 281, 284
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	324, 334, 340
StyI	CCWWGG	1 cut(s)	201
TaqI	TCGA	3 cut(s)	54, 69, 230
TaqII	GACCGA	1 cut(s)	48
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	4, 227
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	1 cut(s)	126
Tsp45I	GTSAC	1 cut(s)	243
TspGWI	ACGGA	2 cut(s)	74, 248
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.