Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Forward (+)

63762128 .. 63772194

Gene Structure 10067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00213310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCTGGGGATAGGCGGATCAGAGGGAGGGGATGGAGGATTCCGGTCGCCGTGGTTGAAGCTACGCCATCGATCTGTGGTTCTGAGGCTGCGTTTTCTCTGCCAGGGAGTTGGCTACGCGGGTTCATGCCAGAGATAGTGGCTGGGTGTTGGTTGGAGAGCGTGGCAAGGCGGAATGTTCCGGTGGCTGGGTTTTGGTTGGAGATTGTGGCAGGCGGAGGTCAAGAGTTTGAGCCCCATCAAGGGTGGGAATGGGATGTACAACAAAATGGCCAATACACAAGAGCGTACGCAACAGCTAAAGGCCTTTTGACGAATCCATTTTCATGTACAAGCCGAGAAGATCCCTCGGTCGAGGACATCCCAAGTTTCGGCAATCCAACTAGCCAACACCAATTCGGTATTCCAGTTGTGGACCTTGGTGATGTTTTCGCTGGAAGGCCTACTAAGGTGATCCAAGATATCCGGCGGGCTGCGAGAGAGTGTGGGGTTCTTTCATGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

168

Amino Acids

18.29

Weight (kDa)

5.7

Isoelectric Point (pI)

57.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	120
AciI	CCGC	5 cut(s)	16, 120, 172, 216, 469
AclWI	GGATC	3 cut(s)	26, 338, 448
AcoI	YGGCCR	1 cut(s)	271
AfaI	GTAC	3 cut(s)	261, 290, 331
AfiI	CCNNNNNNNGG	4 cut(s)	188, 242, 243, 371
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	103
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	2 cut(s)	62, 299
AluI	AGCT	2 cut(s)	62, 299
AlwI	GGATC	3 cut(s)	26, 338, 448
AoxI	GGCC	3 cut(s)	271, 304, 440
ApeKI	GCWGC	2 cut(s)	89, 473
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	2 cut(s)	434, 463
AvaII	GGWCC	1 cut(s)	415
BalI	TGGCCA	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	76, 460
BccI	CCATC	3 cut(s)	27, 76, 246
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	105
BfaI	CTAG	1 cut(s)	384
BisI	GCNGC	2 cut(s)	90, 474
BlsI	GCNGC	2 cut(s)	91, 475
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	71
BsaJI	CCNNGG	4 cut(s)	51, 104, 348, 418
BsaWI	WCCGGW	2 cut(s)	43, 181
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 242, 243, 371
Bse1I	ACTGG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	105
BseCI	ATCGAT	1 cut(s)	71
BseDI	CCNNGG	4 cut(s)	51, 104, 348, 418
BseGI	GGATG	3 cut(s)	38, 262, 360
BseLI	CCNNNNNNNGG	4 cut(s)	188, 242, 243, 371
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	407
BseXI	GCAGC	2 cut(s)	76, 460
BseYI	CCCAGC	3 cut(s)	5, 143, 188
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	2 cut(s)	48, 354
BshFI	GGCC	3 cut(s)	273, 306, 442
BshVI	ATCGAT	1 cut(s)	71
BsiEI	CGRYCG	2 cut(s)	48, 354
BsiSI	CCGG	3 cut(s)	44, 182, 466
BsiWI	CGTACG	1 cut(s)	288
BslI	CCNNNNNNNGG	4 cut(s)	188, 242, 243, 371
BsnI	GGCC	3 cut(s)	273, 306, 442
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp1407I	TGTACA	2 cut(s)	259, 329
Bsp143I	GATC	4 cut(s)	18, 72, 343, 453
BspACI	CCGC	5 cut(s)	16, 120, 172, 216, 469
BspANI	GGCC	3 cut(s)	273, 306, 442
BspCNI	CTCAG	1 cut(s)	76
BspDI	ATCGAT	1 cut(s)	71
BspFNI	CGCG	1 cut(s)	120
BspPI	GGATC	3 cut(s)	26, 338, 448
BsrGI	TGTACA	2 cut(s)	259, 329
BsrI	ACTGG	1 cut(s)	407
BssECI	CCNNGG	4 cut(s)	51, 104, 348, 418
BssMI	GATC	4 cut(s)	18, 72, 343, 453
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	105
BstAUI	TGTACA	2 cut(s)	259, 329
BstC8I	GCNNGC	2 cut(s)	214, 471
BstDEI	CTNAG	2 cut(s)	84, 447
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	38, 262, 360
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	4 cut(s)	21, 75, 346, 456
BstMBI	GATC	4 cut(s)	18, 72, 343, 453
BstMCI	CGRYCG	2 cut(s)	48, 354
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	76, 460
BstX2I	RGATCY	1 cut(s)	343
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	343
Bsu15I	ATCGAT	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	273, 306, 442
BsuTUI	ATCGAT	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	3 cut(s)	38, 262, 360
Cac8I	GCNNGC	2 cut(s)	214, 471
Cfr13I	GGNCC	1 cut(s)	415
ClaI	ATCGAT	1 cut(s)	71
Csp6I	GTAC	3 cut(s)	260, 289, 330
CviAII	CATG	3 cut(s)	127, 327, 498
CviQI	GTAC	3 cut(s)	260, 289, 330
DdeI	CTNAG	2 cut(s)	84, 447
DpnI	GATC	4 cut(s)	20, 74, 345, 455
DpnII	GATC	4 cut(s)	18, 72, 343, 453
EaeI	YGGCCR	1 cut(s)	271
EciI	GGCGGA	3 cut(s)	31, 187, 231
Eco130I	CCWWGG	1 cut(s)	418
Eco147I	AGGCCT	2 cut(s)	306, 442
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	103
EcoRV	GATATC	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	3 cut(s)	130, 330, 501
FaiI	YATR	3 cut(s)	128, 328, 499
FatI	CATG	3 cut(s)	126, 326, 497
FauI	CCCGC	2 cut(s)	113, 462
Fnu4HI	GCNGC	2 cut(s)	90, 474
FokI	GGATG	3 cut(s)	45, 269, 347
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	90, 474
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	2 cut(s)	90, 474
GsaI	CCCAGC	3 cut(s)	9, 147, 192
HaeIII	GGCC	3 cut(s)	273, 306, 442
HapII	CCGG	3 cut(s)	44, 182, 466
Hin1II	CATG	3 cut(s)	130, 330, 501
HinfI	GANTC	2 cut(s)	40, 316
HpaII	CCGG	3 cut(s)	44, 182, 466
HphI	GGTGA	2 cut(s)	434, 463
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	2 cut(s)	23, 85
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	1 cut(s)	432
HpyF3I	CTNAG	2 cut(s)	84, 447
Hsp92II	CATG	3 cut(s)	130, 330, 501
Kzo9I	GATC	4 cut(s)	18, 72, 343, 453
Lsp1109I	GCAGC	2 cut(s)	76, 460
MaeI	CTAG	1 cut(s)	384
MalI	GATC	4 cut(s)	20, 74, 345, 455
MboI	GATC	4 cut(s)	18, 72, 343, 453
MboII	GAAGA	1 cut(s)	353
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	1 cut(s)	395
MluNI	TGGCCA	1 cut(s)	273
MmeI	TCCRAC	3 cut(s)	135, 180, 404
MnlI	CCTC	7 cut(s)	17, 21, 30, 79, 212, 349, 358
Mox20I	TGGCCA	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	1 cut(s)	505
MslI	CAYNNNNRTG	1 cut(s)	325
Msp20I	TGGCCA	1 cut(s)	273
MspI	CCGG	3 cut(s)	44, 182, 466
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
MvnI	CGCG	1 cut(s)	120
NdeII	GATC	4 cut(s)	18, 72, 343, 453
NlaIII	CATG	3 cut(s)	130, 330, 501
NmeAIII	GCCGAG	1 cut(s)	362
PceI	AGGCCT	2 cut(s)	306, 442
PfeI	GAWTC	2 cut(s)	40, 316
Pfl23II	CGTACG	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	91, 475
Psp6I	CCWGG	1 cut(s)	103
PspFI	CCCAGC	3 cut(s)	5, 143, 188
PspGI	CCWGG	1 cut(s)	103
PspLI	CGTACG	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	3 cut(s)	261, 290, 331
RsaNI	GTAC	3 cut(s)	260, 289, 330
RseI	CAYNNNNRTG	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	505
SatI	GCNGC	2 cut(s)	90, 474
Sau3AI	GATC	4 cut(s)	18, 72, 343, 453
Sau96I	GGNCC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	5 cut(s)	64, 223, 301, 420, 453
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	325
Sse9I	AATT	1 cut(s)	395
SseBI	AGGCCT	2 cut(s)	306, 442
SsiI	CCGC	5 cut(s)	16, 120, 172, 216, 469
SspMI	CTAG	1 cut(s)	384
StuI	AGGCCT	2 cut(s)	306, 442
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	418
TaqI	TCGA	2 cut(s)	71, 354
TaqII	GACCGA	1 cut(s)	340
TasI	AATT	1 cut(s)	395
TatI	WGTACW	2 cut(s)	259, 329
TfiI	GAWTC	2 cut(s)	40, 316
Tru1I	TTAA	1 cut(s)	505
Tru9I	TTAA	1 cut(s)	505
TseI	GCWGC	2 cut(s)	89, 473
TspDTI	ATGAA	3 cut(s)	115, 315, 486
VpaK11BI	GGWCC	1 cut(s)	415
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.