Rorug05G0350200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005550
Physical Location & Seq
Forward (+)
43487920 .. 43489019
1100 bp
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UTR
Exon/CDS
Intron
Rorug05G0350200.1

Sequence Viewer

Length: 390 bp
ATGGCATTATCTCTCTCTTCCACTACTGCATTTACATGTTCACAGCTTTATGACAACAAGTCAGGACTGCAGTTCACCAGCTTAAGCTCTCACAAACGTAACCCAAATGCTGTCAATGTCAAGTGTGAATCGACGGAGTCTGAGTTGCCTGCAAATGCAAAGAAATCCAAGCTTGCAATTGGGTCTCCTGTTATTGTGGTCGAGGCTCCGAGAATGATAAAAACCGCAGCATCAGTTCCATGCCTCAGGGTTAACTCTGGCTTAGTCAAGCCTGGTGATGTTGGAAGAATTGTGTCAAGAAAGCCTAAGGATGTGTGGGCGGTACGTCTAACGATTGGCACTTACCTCATAGATGGGAAGTACTTCAAGCCCTTAGAGCTTGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.92

Weight (kDa)

9.64

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRR42-like PF11347 60 - 122 1.5e-25 Protein CHLORORESPIRATORY REDUCTION 42-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 225, 320
AclWI GGATC 1 cut(s) 377
AfaI GTAC 2 cut(s) 324, 362
AflII CTTAAG 1 cut(s) 82
AflIII ACRYGT 1 cut(s) 35
AgsI TTSAA 1 cut(s) 367
AhdI GACNNNNNGTC 1 cut(s) 58
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 5 cut(s) 46, 81, 87, 172, 379
AluI AGCT 5 cut(s) 46, 81, 87, 172, 379
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 1 cut(s) 377
ApeKI GCWGC 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 362
AsuHPI GGTGA 2 cut(s) 67, 287
AxyI CCTNAGG 2 cut(s) 245, 306
BbvI GCAGC 1 cut(s) 239
BccI CCATC 1 cut(s) 347
BciT130I CCWGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 189
BfmI CTRYAG 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 82
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 273
BmeRI GACNNNNNGTC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 189
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bse21I CCTNAGG 2 cut(s) 245, 306
BseBI CCWGG 1 cut(s) 273
BseGI GGATG 1 cut(s) 316
BseMII CTCAG 2 cut(s) 132, 259
BseXI GCAGC 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 382
BspACI CCGC 2 cut(s) 225, 320
BspCNI CTCAG 2 cut(s) 133, 258
BspLI GGNNCC 1 cut(s) 207
BspMAI CTGCAG 1 cut(s) 72
BspPI GGATC 1 cut(s) 377
BspTI CTTAAG 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 189
BssMI GATC 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 273
Bst6I CTCTTC 1 cut(s) 22
BstAFI CTTAAG 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 150, 174
BstDEI CTNAG 5 cut(s) 141, 245, 262, 306, 373
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 1 cut(s) 385
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 1 cut(s) 382
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 239
Bsu36I CCTNAGG 2 cut(s) 245, 306
BtsCI GGATG 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 150, 174
Csp6I GTAC 2 cut(s) 323, 361
CviAII CATG 2 cut(s) 36, 240
CviQI GTAC 2 cut(s) 323, 361
DdeI CTNAG 5 cut(s) 141, 245, 262, 306, 373
DpnI GATC 1 cut(s) 384
DpnII GATC 1 cut(s) 382
DriI GACNNNNNGTC 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 22
Eam1105I GACNNNNNGTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 189
Eco81I CCTNAGG 2 cut(s) 245, 306
EcoRII CCWGG 1 cut(s) 271
FaeI CATG 2 cut(s) 39, 243
FaiI YATR 4 cut(s) 37, 51, 241, 350
FatI CATG 2 cut(s) 35, 239
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 228
Hin1II CATG 2 cut(s) 39, 243
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 128, 137
HpaI GTTAAC 1 cut(s) 253
HphI GGTGA 2 cut(s) 67, 287
Hpy166II GTNNAC 3 cut(s) 41, 75, 253
Hpy188I TCNGA 2 cut(s) 142, 210
Hpy188III TCNNGA 2 cut(s) 63, 297
Hpy8I GTNNAC 3 cut(s) 41, 75, 253
Hpy99I CGWCG 1 cut(s) 136
HpyCH4IV ACGT 2 cut(s) 97, 325
HpyCH4V TGCA 5 cut(s) 29, 70, 152, 158, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 5 cut(s) 141, 245, 262, 306, 373
HpySE526I ACGT 2 cut(s) 97, 325
Hsp92II CATG 2 cut(s) 39, 243
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 382
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 8 cut(s) 48, 91, 162, 201, 232, 243, 258, 285
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 1 cut(s) 239
MaeII ACGT 2 cut(s) 97, 325
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 384
MboI GATC 1 cut(s) 382
MboII GAAGA 2 cut(s) 9, 297
MfeI CAATTG 1 cut(s) 177
MluCI AATT 2 cut(s) 177, 288
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 3 cut(s) 196, 254, 356
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 2 cut(s) 83, 252
MslI CAYNNNNRTG 1 cut(s) 34
MspCI CTTAAG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 376
NdeII GATC 1 cut(s) 382
NlaIII CATG 2 cut(s) 39, 243
NlaIV GGNNCC 1 cut(s) 207
NspI RCATGY 1 cut(s) 39
PciI ACATGT 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 136
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PscI ACATGT 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 207
PstI CTGCAG 1 cut(s) 72
PsyI GACNNNGTC 1 cut(s) 136
RsaI GTAC 2 cut(s) 324, 362
RsaNI GTAC 2 cut(s) 323, 361
RseI CAYNNNNRTG 1 cut(s) 34
SaqAI TTAA 2 cut(s) 83, 252
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 1 cut(s) 382
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 273
SetI ASST 8 cut(s) 48, 83, 89, 100, 174, 328, 348, 381
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 2 cut(s) 177, 288
SsiI CCGC 2 cut(s) 225, 320
StyD4I CCNGG 1 cut(s) 271
TaiI ACGT 2 cut(s) 100, 328
TaqI TCGA 2 cut(s) 131, 201
TasI AATT 2 cut(s) 177, 288
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 2 cut(s) 83, 252
Tru9I TTAA 2 cut(s) 83, 252
TseI GCWGC 1 cut(s) 227
TspGWI ACGGA 1 cut(s) 149
Tth111I GACNNNGTC 1 cut(s) 136
Vha464I CTTAAG 1 cut(s) 82
XceI RCATGY 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 362
ZrmI AGTACT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.