Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Reverse (-)

82483965 .. 82484507

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCTTCTCTCTGAGGGCGAGGATGGTGGTGGCCGAGATTGGGACGCTGTTGAGATCGAACCACTCGCTCCAGAGCGGTTCAGTTCGGAATTTAGGTCAAGTATGTTGGATGGCCAGTTAGGCAGCGGTGTTTGGCAAGGGATGGATGGGGACAAGCGGTCTAGAGGGATGAGATGGAGGTTTAGCGTGGTTGCTGCTACGGCGTCGATCTGCGGTTCTGGGGTTCCGTCCTCTTCATGCTGTAGCGCCTGCCCGGTGGTAGTTGCTCCAAACCTGTTGGGTTGGGGTTGGGGTTGGGGTTGGGGTTGGGGTTGGGGGATCAGGTTGTCTTGGATTGGGGTTGTGGGTATTGCCTCCGGATCTGGTTGGGATAGGGTGGCCGGAATAGCTGGGCTTTGGGACAATCGGGTTGGCGGGGCGCTGATAGAGGTGGTGGTGGGTGTGGCGGCCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

15.83

Weight (kDa)

4.71

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	356
AciI	CCGC	6 cut(s)	76, 126, 157, 213, 414, 446
AclWI	GGATC	2 cut(s)	326, 367
AcoI	YGGCCR	3 cut(s)	31, 112, 378
AcsI	RAATTY	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	40
AhdI	GACNNNNNGTC	1 cut(s)	157
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
AlwI	GGATC	2 cut(s)	326, 367
Aor13HI	TCCGGA	1 cut(s)	356
AoxI	GGCC	4 cut(s)	31, 112, 378, 447
ApeKI	GCWGC	2 cut(s)	123, 194
ApoI	RAATTY	1 cut(s)	89
AspLEI	GCGC	2 cut(s)	248, 421
AsuC2I	CCSGG	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	135, 181
BccI	CCATC	5 cut(s)	17, 104, 136, 140, 168
BceAI	ACGGC	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	254
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	241
BfoI	RGCGCY	2 cut(s)	249, 422
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	3 cut(s)	124, 195, 447
BlsI	GCNGC	3 cut(s)	125, 196, 448
Bme1390I	CCNGG	1 cut(s)	254
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	115
BseAI	TCCGGA	1 cut(s)	356
BseGI	GGATG	5 cut(s)	28, 115, 147, 151, 174
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	135, 181
BseYI	CCCAGC	1 cut(s)	389
BshFI	GGCC	4 cut(s)	33, 114, 380, 449
BsiSI	CCGG	3 cut(s)	254, 357, 381
BslFI	GGGAC	3 cut(s)	56, 164, 413
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	3 cut(s)	56, 164, 413
BsnI	GGCC	4 cut(s)	33, 114, 380, 449
Bsp13I	TCCGGA	1 cut(s)	356
Bsp143I	GATC	4 cut(s)	54, 207, 318, 359
BspACI	CCGC	6 cut(s)	76, 126, 157, 213, 414, 446
BspANI	GGCC	4 cut(s)	33, 114, 380, 449
BspCNI	CTCAG	1 cut(s)	4
BspEI	TCCGGA	1 cut(s)	356
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	2 cut(s)	326, 367
BsrBI	CCGCTC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	115
BssMI	GATC	4 cut(s)	54, 207, 318, 359
BssNI	GRCGYC	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	250, 451
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	5 cut(s)	28, 115, 147, 151, 174
BstH2I	RGCGCY	2 cut(s)	249, 422
BstHHI	GCGC	2 cut(s)	248, 421
BstKTI	GATC	4 cut(s)	57, 210, 321, 362
BstMBI	GATC	4 cut(s)	54, 207, 318, 359
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 200, 386
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	135, 181
BstX2I	RGATCY	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	359
BsuRI	GGCC	4 cut(s)	33, 114, 380, 449
BtsCI	GGATG	5 cut(s)	28, 115, 147, 151, 174
Cac8I	GCNNGC	2 cut(s)	250, 451
CfoI	GCGC	2 cut(s)	248, 421
CseI	GACGC	2 cut(s)	53, 192
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	6 cut(s)	33, 114, 380, 389, 394, 449
CviKI_1	RGCY	6 cut(s)	33, 114, 380, 389, 394, 449
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	4 cut(s)	56, 209, 320, 361
DpnII	GATC	4 cut(s)	54, 207, 318, 359
DriI	GACNNNNNGTC	1 cut(s)	157
EaeI	YGGCCR	3 cut(s)	31, 112, 378
Eam1104I	CTCTTC	1 cut(s)	238
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	238
FaeI	CATG	1 cut(s)	240
FaiI	YATR	2 cut(s)	104, 238
FaqI	GGGAC	3 cut(s)	56, 164, 413
FatI	CATG	1 cut(s)	236
FauI	CCCGC	1 cut(s)	407
Fnu4HI	GCNGC	3 cut(s)	124, 195, 447
FokI	GGATG	5 cut(s)	35, 122, 154, 158, 181
Fsp4HI	GCNGC	3 cut(s)	124, 195, 447
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	2 cut(s)	247, 420
GluI	GCNGC	3 cut(s)	124, 195, 447
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	54
HaeII	RGCGCY	2 cut(s)	249, 422
HaeIII	GGCC	4 cut(s)	33, 114, 380, 449
HapII	CCGG	3 cut(s)	254, 357, 381
HgaI	GACGC	2 cut(s)	53, 192
HhaI	GCGC	2 cut(s)	248, 421
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	1 cut(s)	240
Hin6I	GCGC	2 cut(s)	246, 419
HinP1I	GCGC	2 cut(s)	246, 419
HpaII	CCGG	3 cut(s)	254, 357, 381
Hpy188I	TCNGA	2 cut(s)	13, 88
Hpy188III	TCNNGA	3 cut(s)	71, 162, 357
Hpy99I	CGWCG	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 200, 386
HpyF3I	CTNAG	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	240
HspAI	GCGC	2 cut(s)	246, 419
Kpn2I	TCCGGA	1 cut(s)	356
Kzo9I	GATC	4 cut(s)	54, 207, 318, 359
LmnI	GCTCC	2 cut(s)	73, 271
Lsp1109I	GCAGC	2 cut(s)	135, 181
MaeI	CTAG	1 cut(s)	162
MalI	GATC	4 cut(s)	56, 209, 320, 361
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	4 cut(s)	54, 207, 318, 359
MboII	GAAGA	1 cut(s)	225
MflI	RGATCY	1 cut(s)	359
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	1 cut(s)	89
MluNI	TGGCCA	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	7 cut(s)	7, 13, 158, 171, 241, 364, 421
Mox20I	TGGCCA	1 cut(s)	114
MroI	TCCGGA	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	3 cut(s)	254, 357, 381
MspR9I	CCNGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	120, 200, 386
NciI	CCSGG	1 cut(s)	254
NdeII	GATC	4 cut(s)	54, 207, 318, 359
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	1 cut(s)	225
NmeAIII	GCCGAG	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	125, 196, 448
PspFI	CCCAGC	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	359
SatI	GCNGC	3 cut(s)	124, 195, 447
Sau3AI	GATC	4 cut(s)	54, 207, 318, 359
ScrFI	CCNGG	1 cut(s)	254
SetI	ASST	6 cut(s)	98, 182, 276, 326, 391, 432
SfcI	CTRYAG	1 cut(s)	241
Sse9I	AATT	1 cut(s)	89
SsiI	CCGC	6 cut(s)	76, 126, 157, 213, 414, 446
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	252
TaqI	TCGA	2 cut(s)	57, 206
TasI	AATT	1 cut(s)	89
TauI	GCSGC	1 cut(s)	449
TseI	GCWGC	2 cut(s)	123, 194
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	216
XapI	RAATTY	1 cut(s)	89
XbaI	TCTAGA	1 cut(s)	161
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.