Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Reverse (-)

32115795 .. 32117688

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024120

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCTCTCAGATGGCAAGGACTGTGATGGCCGAGTTTTGGCTGGTGTTGCGATTGATCCACTCAATCCGGATCCGATCCGATCCGAGTTGAGATTGGGTGTGTTGGATGGTGGGATAGGCAGCAAGGTTTGGCAAGGGGTGGGTGGGGACAGGCTGATTAGAGGGATGAGAAGGAGGGATGGAGTCGCTATGGTTGATGTGTCAACGATCCGTGGTTTTGTGGCCTCGTTTTCTTTGCCAATGAGTTGGCTGCTTGGGTTCAGATCAGAGATCGAGTTGACTGGTCAGGTGGCTGGGATTTGGACGGAGATTTGGGCTAGGCAGAGGCGCAATGATGGGGACACAATGGAGGTGGCGGCTCTGATAGCTGATACTAGGAAGACTCAAGGAGCAGCTATTGAGATGTACTTCTTTCTTGCTTTCTCCCTTAAGTCGTCGAATGGCATCAGAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.47

Weight (kDa)

7.9

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	1 cut(s)	356
AclWI	GGATC	6 cut(s)	50, 65, 70, 75, 78, 202
AcoI	YGGCCR	1 cut(s)	28
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflII	CTTAAG	1 cut(s)	428
AluBI	AGCT	2 cut(s)	368, 395
AluI	AGCT	2 cut(s)	368, 395
AlwI	GGATC	6 cut(s)	50, 65, 70, 75, 78, 202
Aor13HI	TCCGGA	1 cut(s)	67
AoxI	GGCC	2 cut(s)	28, 222
ApeKI	GCWGC	3 cut(s)	120, 250, 392
AspLEI	GCGC	1 cut(s)	330
BamHI	GGATCC	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	386
BbvI	GCAGC	3 cut(s)	132, 237, 404
BccI	CCATC	5 cut(s)	5, 20, 101, 173, 329
BfaI	CTAG	2 cut(s)	318, 375
BfrI	CTTAAG	1 cut(s)	428
BisI	GCNGC	4 cut(s)	121, 251, 357, 393
BlsI	GCNGC	4 cut(s)	122, 252, 358, 394
BmiI	GGNNCC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	211
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	337
BseAI	TCCGGA	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	3 cut(s)	112, 171, 184
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	286
BseXI	GCAGC	3 cut(s)	132, 237, 404
BseYI	CCCAGC	1 cut(s)	293
BshFI	GGCC	2 cut(s)	30, 224
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	2 cut(s)	161, 353
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmFI	GGGAC	2 cut(s)	161, 353
BsnI	GGCC	2 cut(s)	30, 224
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	7 cut(s)	55, 70, 75, 80, 207, 263, 270
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	2 cut(s)	30, 224
BspCNI	CTCAG	1 cut(s)	20
BspEI	TCCGGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	6 cut(s)	50, 65, 70, 75, 78, 202
BspTI	CTTAAG	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	7 cut(s)	55, 70, 75, 80, 207, 263, 270
Bst4CI	ACNGT	1 cut(s)	23
BstAFI	CTTAAG	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	7
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	3 cut(s)	112, 171, 184
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	7 cut(s)	58, 73, 78, 83, 210, 266, 273
BstMBI	GATC	7 cut(s)	55, 70, 75, 80, 207, 263, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 365
BstV1I	GCAGC	3 cut(s)	132, 237, 404
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	30, 224
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	3 cut(s)	112, 171, 184
CfoI	GCGC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	406
CspCI	CAANNNNNGTGG	2 cut(s)	333, 368
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	1 cut(s)	7
DpnI	GATC	7 cut(s)	57, 72, 77, 82, 209, 265, 272
DpnII	GATC	7 cut(s)	55, 70, 75, 80, 207, 263, 270
EaeI	YGGCCR	1 cut(s)	28
FaiI	YATR	2 cut(s)	191, 454
FaqI	GGGAC	2 cut(s)	161, 353
Fnu4HI	GCNGC	4 cut(s)	121, 251, 357, 393
FokI	GGATG	3 cut(s)	119, 178, 191
Fsp4HI	GCNGC	4 cut(s)	121, 251, 357, 393
FspBI	CTAG	2 cut(s)	318, 375
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	4 cut(s)	121, 251, 357, 393
GsaI	CCCAGC	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	30, 224
HapII	CCGG	1 cut(s)	68
HhaI	GCGC	1 cut(s)	330
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	2 cut(s)	204, 279
HindII	GTYRAC	2 cut(s)	204, 279
HinfI	GANTC	2 cut(s)	183, 382
HpaII	CCGG	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	204, 279
Hpy188I	TCNGA	8 cut(s)	10, 75, 80, 85, 263, 268, 363, 449
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	2 cut(s)	204, 279
Hpy99I	CGWCG	1 cut(s)	439
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 365
HpyF3I	CTNAG	1 cut(s)	7
HspAI	GCGC	1 cut(s)	328
Kpn2I	TCCGGA	1 cut(s)	67
Kzo9I	GATC	7 cut(s)	55, 70, 75, 80, 207, 263, 270
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	6 cut(s)	27, 81, 136, 267, 272, 279
Lsp1109I	GCAGC	3 cut(s)	132, 237, 404
MaeI	CTAG	2 cut(s)	318, 375
MalI	GATC	7 cut(s)	57, 72, 77, 82, 209, 265, 272
MboI	GATC	7 cut(s)	55, 70, 75, 80, 207, 263, 270
MboII	GAAGA	1 cut(s)	391
MflI	RGATCY	1 cut(s)	70
MlyI	GAGTC	2 cut(s)	192, 376
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	5 cut(s)	155, 168, 235, 318, 343
MroI	TCCGGA	1 cut(s)	67
MseI	TTAA	1 cut(s)	429
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	47, 365
NdeII	GATC	7 cut(s)	55, 70, 75, 80, 207, 263, 270
NlaIV	GGNNCC	1 cut(s)	72
NmeAIII	GCCGAG	1 cut(s)	56
PkrI	GCNGC	4 cut(s)	122, 252, 358, 394
PleI	GAGTC	2 cut(s)	191, 376
PpsI	GAGTC	2 cut(s)	191, 376
PspFI	CCCAGC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	4 cut(s)	121, 251, 357, 393
Sau3AI	GATC	7 cut(s)	55, 70, 75, 80, 207, 263, 270
SchI	GAGTC	2 cut(s)	192, 376
SetI	ASST	5 cut(s)	129, 291, 354, 370, 397
SmlI	CTYRAG	2 cut(s)	384, 428
SmoI	CTYRAG	2 cut(s)	384, 428
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	2 cut(s)	318, 375
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	273, 437
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseI	GCWGC	3 cut(s)	120, 250, 392
TspGWI	ACGGA	2 cut(s)	200, 320
Vha464I	CTTAAG	1 cut(s)	428
XspI	CTAG	2 cut(s)	318, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.