Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Reverse (-)

66095018 .. 66096366

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG444200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTTTCTTCCAGATGGCAAGGATGGTGGTGGCCGAGTTCGGGCCGCCGTTGAGATTGAACCAATCAATCCCGATCGGTTCCGATCGGATCTCAGGTTGAGTGGGTTGGATGGCCGGGTAGGCAGCGGTGCTTGGCAGGGAAGGGATGGGAACAGGCCGGTCGACGGGTGGAGATGGCGGTTCAGCGTTGTTGCAGCTATGGCGTCGAGCTGCGTTGCTGGTTTTTCATCTTCTTTGCTTGTGTCTTGGCTGCTTGGGTTCAGATCGGGTGGCGATTTGCCTATTAGGGTGGCTGGGATCTGGGCGGAGGTAGGGACAAGGCAGAGGCGCGGCGATGGTGGCGCTGTGGTGGTGGCGGCGTTAGTGGGGCTGGGTTGTCGGCTTGGGCTGGAATCCTGTGTGTTTCTTGCTGGGCCTAATGTTTTCCGGTACTTCGGTGAGATGAACTTTGCTGTTCTGACCAAAAGAGAAAGAAGAAATTTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.54

Weight (kDa)

10.57

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	330
AciI	CCGC	6 cut(s)	45, 126, 178, 305, 330, 356
AclWI	GGATC	2 cut(s)	96, 305
AcoI	YGGCCR	2 cut(s)	31, 112
AcsI	RAATTY	1 cut(s)	478
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	2 cut(s)	40, 164
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	2 cut(s)	197, 210
AluI	AGCT	2 cut(s)	197, 210
AlwI	GGATC	2 cut(s)	96, 305
AoxI	GGCC	5 cut(s)	31, 42, 112, 155, 413
ApeKI	GCWGC	4 cut(s)	123, 194, 210, 250
ApoI	RAATTY	1 cut(s)	478
AspLEI	GCGC	2 cut(s)	330, 344
AspS9I	GGNCC	2 cut(s)	42, 413
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	449
BaeI	ACNNNNGTAYC	2 cut(s)	421, 454
BbvI	GCAGC	4 cut(s)	135, 197, 206, 237
BccI	CCATC	6 cut(s)	8, 17, 104, 140, 168, 329
BceAI	ACGGC	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	345
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	7 cut(s)	45, 124, 195, 211, 251, 331, 357
BlsI	GCNGC	7 cut(s)	46, 125, 196, 212, 252, 332, 358
Bme1390I	CCNGG	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	42, 413
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 164
Bse118I	RCCGGY	1 cut(s)	157
BseGI	GGATG	3 cut(s)	28, 115, 151
BseLI	CCNNNNNNNGG	2 cut(s)	40, 164
BseMII	CTCAG	1 cut(s)	106
BseXI	GCAGC	4 cut(s)	135, 197, 206, 237
BseYI	CCCAGC	3 cut(s)	293, 370, 410
Bsh1236I	CGCG	1 cut(s)	330
Bsh1285I	CGRYCG	3 cut(s)	76, 86, 162
BshFI	GGCC	5 cut(s)	33, 44, 114, 157, 415
BsiEI	CGRYCG	3 cut(s)	76, 86, 162
BsiSI	CCGG	3 cut(s)	115, 158, 427
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	40, 164
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	5 cut(s)	33, 44, 114, 157, 415
Bsp143I	GATC	5 cut(s)	73, 83, 88, 263, 297
BspACI	CCGC	6 cut(s)	45, 126, 178, 305, 330, 356
BspANI	GGCC	5 cut(s)	33, 44, 114, 157, 415
BspCNI	CTCAG	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	96, 305
BsrFI	RCCGGY	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	157
BssMI	GATC	5 cut(s)	73, 83, 88, 263, 297
BssNI	GRCGYC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	3 cut(s)	28, 115, 151
BstFNI	CGCG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	2 cut(s)	330, 344
BstKTI	GATC	5 cut(s)	76, 86, 91, 266, 300
BstMBI	GATC	5 cut(s)	73, 83, 88, 263, 297
BstMCI	CGRYCG	3 cut(s)	76, 86, 162
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 200, 339
BstSCI	CCNGG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	4 cut(s)	135, 197, 206, 237
BstX2I	RGATCY	2 cut(s)	88, 297
BstYI	RGATCY	2 cut(s)	88, 297
BsuRI	GGCC	5 cut(s)	33, 44, 114, 157, 415
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	3 cut(s)	28, 115, 151
CfoI	GCGC	2 cut(s)	330, 344
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	42, 413
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	430
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	5 cut(s)	75, 85, 90, 265, 299
DpnII	GATC	5 cut(s)	73, 83, 88, 263, 297
EaeI	YGGCCR	2 cut(s)	31, 112
EciI	GGCGGA	1 cut(s)	320
FaiI	YATR	1 cut(s)	200
FaqI	GGGAC	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	7 cut(s)	45, 124, 195, 211, 251, 331, 357
FokI	GGATG	3 cut(s)	35, 122, 158
Fsp4HI	GCNGC	7 cut(s)	45, 124, 195, 211, 251, 331, 357
GlaI	GCGC	2 cut(s)	329, 343
GluI	GCNGC	7 cut(s)	45, 124, 195, 211, 251, 331, 357
GsaI	CCCAGC	3 cut(s)	297, 374, 414
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	5 cut(s)	33, 44, 114, 157, 415
HapII	CCGG	3 cut(s)	115, 158, 427
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	2 cut(s)	330, 344
Hin1I	GRCGYC	1 cut(s)	203
Hin6I	GCGC	2 cut(s)	328, 342
HinP1I	GCGC	2 cut(s)	328, 342
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	3 cut(s)	115, 158, 427
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	4 cut(s)	83, 88, 263, 459
Hpy188III	TCNNGA	2 cut(s)	11, 71
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	2 cut(s)	167, 208
HpyAV	CCTTC	1 cut(s)	135
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 200, 339
HpyF3I	CTNAG	1 cut(s)	92
Hsp92I	GRCGYC	1 cut(s)	203
HspAI	GCGC	2 cut(s)	328, 342
Kzo9I	GATC	5 cut(s)	73, 83, 88, 263, 297
Lsp1109I	GCAGC	4 cut(s)	135, 197, 206, 237
MalI	GATC	5 cut(s)	75, 85, 90, 265, 299
MboI	GATC	5 cut(s)	73, 83, 88, 263, 297
MboII	GAAGA	3 cut(s)	222, 475, 486
MflI	RGATCY	2 cut(s)	88, 297
MluCI	AATT	1 cut(s)	478
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	2 cut(s)	301, 318
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	3 cut(s)	115, 158, 427
MspR9I	CCNGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	120, 200, 339
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	5 cut(s)	73, 83, 88, 263, 297
NlaIV	GGNNCC	1 cut(s)	80
NmeAIII	GCCGAG	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	392
PkrI	GCNGC	7 cut(s)	46, 125, 196, 212, 252, 332, 358
Ple19I	CGATCG	2 cut(s)	76, 86
PspFI	CCCAGC	3 cut(s)	293, 370, 410
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	2 cut(s)	42, 413
PsuI	RGATCY	2 cut(s)	88, 297
PvuI	CGATCG	2 cut(s)	76, 86
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SalI	GTCGAC	1 cut(s)	161
SatI	GCNGC	7 cut(s)	45, 124, 195, 211, 251, 331, 357
Sau3AI	GATC	5 cut(s)	73, 83, 88, 263, 297
Sau96I	GGNCC	2 cut(s)	42, 413
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	4 cut(s)	98, 199, 212, 312
Sse9I	AATT	1 cut(s)	478
SsiI	CCGC	6 cut(s)	45, 126, 178, 305, 330, 356
StyD4I	CCNGG	1 cut(s)	114
TaqI	TCGA	2 cut(s)	162, 206
TasI	AATT	1 cut(s)	478
TauI	GCSGC	3 cut(s)	47, 333, 359
TfiI	GAWTC	1 cut(s)	392
TseI	GCWGC	4 cut(s)	123, 194, 210, 250
TspDTI	ATGAA	2 cut(s)	216, 458
XapI	RAATTY	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.