Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Forward (+)

1630044 .. 1637164

Gene Structure 7121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTATCCTCCCTCGGCCTCGAGACAACGTCGGAGTCGAAGCGTCGAAGAAGCGGAGGATGTCCATGCTTTCTTTGGAGATCGGCACGAGTGTAATGTGTCGTTGGAGAAACTCCAAGTACCATCCCGTCAAGGTTATTGAAAGCCGGAGGGTTCAACGGGGCCGCCCAACGATTACGAGTATTACGTCCACTACACCGAGTCAAGAAGCATCAGATAGAACGCGCTTCCACAGGCTCTCCAAAACCGAGTTTTTTTTCCAGACTACTGTTCTTCTTGTCCGGCGACACCTCCCCTTTGGCGTAGGCCTTTGGCCTCGTCGGCATGTGGCGAGGGCAGCCGGACTGGCCACTATGGACTTTAATAGCCTGATTTCGTCCCTTTGGTGTCGAGGTGATGGTGGCGGCCGAGTTTGGGCCGTTGTTCTGACTGATGCACACAATCCCGGTCGAATCAGATCTGATCTGAGATCGAGTGCGTTGGATGGAAGGTTAGGTAGAATGGTTTGGCAAGGGGTGGCTGCGGACAGGCGGTTTACAGGGAGGAGATGGAGGTCTAGCGTCGTAGAAACTTCAGCGTCGATCTGTGGCTCTGGGGTTAAGCTTTCTCTGCCCGTGTTTTGGCTGTTGGGCTTCAGATCGGAAAACGATCTGATTACTAGGGCTGAGTTCTGGACGGAGAGCAGGACAAGGTGGAGGCGCAATGATGGAGTTGCGGTAGTGGCGGCGGCGTTGTGGTGCTGGAAACAAACTGCTGGGCTGGACTCTGCAAATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0033554 GO:0034212 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0043995 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051276 GO:0051716 GO:0061733 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOZ_SAS Tudor-knot

Protein Analysis

259

Amino Acids

29.32

Weight (kDa)

11.6

Isoelectric Point (pI)

65.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	226
AciI	CCGC	8 cut(s)	55, 166, 405, 524, 532, 716, 725, 728
AcoI	YGGCCR	2 cut(s)	348, 406
AcuI	CTGAAG	2 cut(s)	558, 619
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	415, 621
AgsI	TTSAA	2 cut(s)	143, 158
AluBI	AGCT	1 cut(s)	604
AluI	AGCT	1 cut(s)	604
Alw26I	GTCTC	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	21
AoxI	GGCC	7 cut(s)	17, 163, 307, 314, 348, 406, 417
ApeKI	GCWGC	2 cut(s)	338, 521
AspLEI	GCGC	2 cut(s)	228, 702
AspS9I	GGNCC	2 cut(s)	163, 417
AsuC2I	CCSGG	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	21
BalI	TGGCCA	1 cut(s)	350
BauI	CACGAG	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	350, 508
BccI	CCATC	5 cut(s)	132, 392, 479, 543, 701
BceAI	ACGGC	1 cut(s)	404
BcnI	CCSGG	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	2 cut(s)	558, 660
BglI	GCCNNNNNGGC	2 cut(s)	322, 347
BglII	AGATCT	1 cut(s)	458
BisI	GCNGC	6 cut(s)	166, 339, 406, 522, 726, 729
BlsI	GCNGC	6 cut(s)	167, 340, 407, 523, 727, 730
Bme1390I	CCNGG	1 cut(s)	447
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	2 cut(s)	163, 417
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	2 cut(s)	221, 424
BpuMI	CCSGG	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	14
BsaXI	ACNNNNNCTCC	4 cut(s)	224, 254, 702, 732
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 621
Bse1I	ACTGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	709
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	3 cut(s)	66, 124, 490
BseLI	CCNNNNNNNGG	2 cut(s)	415, 621
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	2 cut(s)	458, 657
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	559
BseX3I	CGGCCG	1 cut(s)	406
BseXI	GCAGC	2 cut(s)	350, 508
BseYI	CCCAGC	1 cut(s)	755
Bsh1236I	CGCG	1 cut(s)	226
Bsh1285I	CGRYCG	2 cut(s)	409, 451
BshFI	GGCC	7 cut(s)	19, 165, 309, 316, 350, 408, 419
BsiEI	CGRYCG	2 cut(s)	409, 451
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	4 cut(s)	148, 283, 342, 447
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	415, 621
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	7 cut(s)	19, 165, 309, 316, 350, 408, 419
BsoBI	CYCGRG	1 cut(s)	21
Bsp143I	GATC	7 cut(s)	81, 458, 463, 470, 582, 638, 649
BspACI	CCGC	8 cut(s)	55, 166, 405, 524, 532, 716, 725, 728
BspANI	GGCC	7 cut(s)	19, 165, 309, 316, 350, 408, 419
BspCNI	CTCAG	2 cut(s)	459, 658
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	709
BsrI	ACTGG	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	7 cut(s)	81, 458, 463, 470, 582, 638, 649
BssSI	CACGAG	1 cut(s)	88
Bst2BI	CACGAG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	271
BstDEI	CTNAG	2 cut(s)	467, 666
BstF5I	GGATG	3 cut(s)	66, 124, 490
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	228, 702
BstKTI	GATC	7 cut(s)	84, 461, 466, 473, 585, 641, 652
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	7 cut(s)	81, 458, 463, 470, 582, 638, 649
BstMCI	CGRYCG	2 cut(s)	409, 451
BstMWI	GCNNNNNNNGC	5 cut(s)	322, 338, 347, 610, 722
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	445
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	350, 508
BstX2I	RGATCY	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	458
BstZI	CGGCCG	1 cut(s)	406
BsuRI	GGCC	7 cut(s)	19, 165, 309, 316, 350, 408, 419
BtsCI	GGATG	3 cut(s)	66, 124, 490
CfoI	GCGC	2 cut(s)	228, 702
Cfr13I	GGNCC	2 cut(s)	163, 417
CseI	GACGC	3 cut(s)	33, 550, 567
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	67, 326
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	467, 666
DpnI	GATC	7 cut(s)	83, 460, 465, 472, 584, 640, 651
DpnII	GATC	7 cut(s)	81, 458, 463, 470, 582, 638, 649
EaeI	YGGCCR	2 cut(s)	348, 406
EagI	CGGCCG	1 cut(s)	406
EclXI	CGGCCG	1 cut(s)	406
Eco147I	AGGCCT	1 cut(s)	309
Eco52I	CGGCCG	1 cut(s)	406
Eco57I	CTGAAG	2 cut(s)	558, 619
Eco88I	CYCGRG	1 cut(s)	21
FaeI	CATG	2 cut(s)	70, 329
FaiI	YATR	3 cut(s)	68, 327, 356
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	2 cut(s)	66, 325
Fnu4HI	GCNGC	6 cut(s)	166, 339, 406, 522, 726, 729
FokI	GGATG	3 cut(s)	73, 111, 497
Fsp4HI	GCNGC	6 cut(s)	166, 339, 406, 522, 726, 729
FspBI	CTAG	2 cut(s)	558, 660
GlaI	GCGC	2 cut(s)	227, 701
GluI	GCNGC	6 cut(s)	166, 339, 406, 522, 726, 729
GsaI	CCCAGC	1 cut(s)	759
HaeIII	GGCC	7 cut(s)	19, 165, 309, 316, 350, 408, 419
HapII	CCGG	4 cut(s)	148, 283, 342, 447
HgaI	GACGC	3 cut(s)	33, 550, 567
HhaI	GCGC	2 cut(s)	228, 702
Hin1II	CATG	2 cut(s)	70, 329
Hin6I	GCGC	2 cut(s)	226, 700
HinP1I	GCGC	2 cut(s)	226, 700
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	4 cut(s)	36, 202, 453, 764
HpaII	CCGG	4 cut(s)	148, 283, 342, 447
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	2 cut(s)	192, 537
Hpy188I	TCNGA	9 cut(s)	35, 217, 429, 458, 463, 468, 638, 643, 654
Hpy188III	TCNNGA	4 cut(s)	23, 206, 262, 673
Hpy8I	GTNNAC	2 cut(s)	192, 537
Hpy99I	CGWCG	5 cut(s)	35, 49, 324, 566, 583
HpyAV	CCTTC	1 cut(s)	483
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	30, 188
HpyCH4V	TGCA	2 cut(s)	437, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	322, 338, 347, 610, 722
HpyF3I	CTNAG	2 cut(s)	467, 666
HpySE526I	ACGT	2 cut(s)	30, 188
Hsp92II	CATG	2 cut(s)	70, 329
HspAI	GCGC	2 cut(s)	226, 700
Kzo9I	GATC	7 cut(s)	81, 458, 463, 470, 582, 638, 649
Lsp1109I	GCAGC	2 cut(s)	350, 508
LweI	GCATC	2 cut(s)	221, 424
MaeI	CTAG	2 cut(s)	558, 660
MaeII	ACGT	2 cut(s)	30, 188
MalI	GATC	7 cut(s)	83, 460, 465, 472, 584, 640, 651
MboI	GATC	7 cut(s)	81, 458, 463, 470, 582, 638, 649
MboII	GAAGA	2 cut(s)	61, 266
MflI	RGATCY	1 cut(s)	458
MlsI	TGGCCA	1 cut(s)	350
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	3 cut(s)	45, 211, 758
MmeI	TCCRAC	3 cut(s)	13, 86, 462
Mox20I	TGGCCA	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	3 cut(s)	363, 600, 778
Msp20I	TGGCCA	1 cut(s)	350
MspI	CCGG	4 cut(s)	148, 283, 342, 447
MspR9I	CCNGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	5 cut(s)	322, 338, 347, 610, 722
NciI	CCSGG	1 cut(s)	447
NdeII	GATC	7 cut(s)	81, 458, 463, 470, 582, 638, 649
NlaIII	CATG	2 cut(s)	70, 329
NlaIV	GGNNCC	1 cut(s)	164
NmeAIII	GCCGAG	1 cut(s)	434
NspI	RCATGY	1 cut(s)	329
PaeR7I	CTCGAG	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 185
PfeI	GAWTC	1 cut(s)	453
PflFI	GACNNNGTC	1 cut(s)	29
PkrI	GCNGC	6 cut(s)	167, 340, 407, 523, 727, 730
PleI	GAGTC	3 cut(s)	44, 210, 758
PpsI	GAGTC	3 cut(s)	44, 210, 758
PspFI	CCCAGC	1 cut(s)	755
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	163, 417
PsuI	RGATCY	1 cut(s)	458
PsyI	GACNNNGTC	1 cut(s)	29
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	3 cut(s)	363, 600, 778
SatI	GCNGC	6 cut(s)	166, 339, 406, 522, 726, 729
Sau3AI	GATC	7 cut(s)	81, 458, 463, 470, 582, 638, 649
Sau96I	GGNCC	2 cut(s)	163, 417
SchI	GAGTC	3 cut(s)	45, 211, 758
ScrFI	CCNGG	1 cut(s)	447
SfaNI	GCATC	2 cut(s)	221, 424
Sfr274I	CTCGAG	1 cut(s)	21
SlaI	CTCGAG	1 cut(s)	21
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	8 cut(s)	55, 166, 405, 524, 532, 716, 725, 728
SspMI	CTAG	2 cut(s)	558, 660
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	33, 191
TaqI	TCGA	7 cut(s)	22, 39, 47, 391, 451, 473, 581
TauI	GCSGC	4 cut(s)	168, 408, 728, 731
TfiI	GAWTC	1 cut(s)	453
Tru1I	TTAA	3 cut(s)	363, 600, 778
Tru9I	TTAA	3 cut(s)	363, 600, 778
TseI	GCWGC	2 cut(s)	338, 521
TspGWI	ACGGA	1 cut(s)	692
Tth111I	GACNNNGTC	1 cut(s)	29
XceI	RCATGY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	21
XspI	CTAG	2 cut(s)	558, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.