Rw4G016660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0005550
Physical Location & Seq
Forward (+)
37928614 .. 37930262
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G016660.1

Sequence Viewer

Length: 324 bp
ATGGCCAACTTTTCTTTCTACTTGCTCGTGGTCCTCGTGGTATTTACTTCAGTGAGATGGGTGAGTGGCATCGTGTGTCACCTAGCTGTAGATAATGGTGGTTGTCCTGATGAACATGAGTGTTTAACGACATGTAGTACTTGTTACCGGAACATTGGGACTGTCTCTTCCTACTGTGAAACTGTTGCTACGCCAGTTCCGATTACACAATGTGTGTGTGTGATGGCTAATGGTGCCCCCTGCAGTCCTCCTGGTGAACCAAAGTGCCCTAACTGGCCTCGATCTCCTCCTGCTAGTTTCGCCATGAACAACACTACCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.43

Weight (kDa)

5.43

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 33
AdeI CACNNNGTG 1 cut(s) 212
AfaI GTAC 1 cut(s) 139
AflIII ACRYGT 1 cut(s) 131
AjnI CCWGG 1 cut(s) 250
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 317
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 169
AoxI GGCC 2 cut(s) 3, 275
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 3 cut(s) 71, 73, 266
AvaII GGWCC 1 cut(s) 31
BaeGI GKGCMC 2 cut(s) 238, 269
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 233
BauI CACGAG 2 cut(s) 26, 35
BccI CCATC 2 cut(s) 51, 217
BciT130I CCWGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 2 cut(s) 83, 294
BfmI CTRYAG 2 cut(s) 87, 241
BmcAI AGTACT 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 147
Bse1I ACTGG 2 cut(s) 194, 278
BseBI CCWGG 1 cut(s) 252
BseNI ACTGG 2 cut(s) 194, 278
BseRI GAGGAG 1 cut(s) 276
BseSI GKGCMC 2 cut(s) 238, 269
BshFI GGCC 2 cut(s) 5, 277
BshNI GGYRCC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 2 cut(s) 5, 277
Bsp1286I GDGCHC 2 cut(s) 238, 269
Bsp143I GATC 1 cut(s) 281
BspANI GGCC 2 cut(s) 5, 277
BspLI GGNNCC 1 cut(s) 235
BspMAI CTGCAG 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 233
BsrI ACTGG 2 cut(s) 194, 278
BssMI GATC 1 cut(s) 281
BssSI CACGAG 2 cut(s) 26, 35
Bst2BI CACGAG 2 cut(s) 26, 35
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 4 cut(s) 163, 176, 184, 319
Bst6I CTCTTC 1 cut(s) 172
BstKTI GATC 1 cut(s) 284
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 1 cut(s) 281
BstMWI GCNNNNNNNGC 2 cut(s) 233, 299
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 2 cut(s) 87, 241
BstSLI GKGCMC 2 cut(s) 238, 269
BsuRI GGCC 2 cut(s) 5, 277
BtsIMutI CAGTG 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 138
CviAII CATG 3 cut(s) 116, 132, 304
CviJI RGCY 4 cut(s) 5, 86, 227, 277
CviKI_1 RGCY 4 cut(s) 5, 86, 227, 277
CviQI GTAC 1 cut(s) 138
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
DraIII CACNNNGTG 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 119, 135, 307
FaiI YATR 3 cut(s) 117, 133, 305
FaqI GGGAC 1 cut(s) 172
FatI CATG 3 cut(s) 115, 131, 303
FspBI CTAG 2 cut(s) 83, 294
HaeIII GGCC 2 cut(s) 5, 277
HapII CCGG 1 cut(s) 148
Hin1II CATG 3 cut(s) 119, 135, 307
HpaII CCGG 1 cut(s) 148
HphI GGTGA 3 cut(s) 71, 73, 266
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 257
HpyCH4III ACNGT 4 cut(s) 163, 176, 184, 319
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 299
Hsp92II CATG 3 cut(s) 119, 135, 307
Kzo9I GATC 1 cut(s) 281
LpnPI CCDG 8 cut(s) 120, 161, 207, 237, 253, 259, 264, 303
LweI GCATC 1 cut(s) 78
MaeI CTAG 2 cut(s) 83, 294
MaeIII GTNAC 2 cut(s) 77, 143
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MboII GAAGA 1 cut(s) 159
MhlI GDGCHC 2 cut(s) 238, 269
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 44, 258, 288, 297
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 233, 299
NdeII GATC 1 cut(s) 281
NlaIII CATG 3 cut(s) 119, 135, 307
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 77
NspI RCATGY 1 cut(s) 135
OliI CACNNNNGTG 1 cut(s) 317
PciI ACATGT 1 cut(s) 131
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 197
PscI ACATGT 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 31
PstI CTGCAG 1 cut(s) 245
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 1 cut(s) 125
Sau3AI GATC 1 cut(s) 281
Sau96I GGNCC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 2 cut(s) 238, 269
SetI ASST 2 cut(s) 84, 88
SfaNI GCATC 1 cut(s) 78
SfcI CTRYAG 2 cut(s) 87, 241
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 317
SspMI CTAG 2 cut(s) 83, 294
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 4 cut(s) 163, 176, 184, 319
TaqI TCGA 1 cut(s) 280
TatI WGTACW 1 cut(s) 137
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 126, 320
TspRI CASTG 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 31
XceI RCATGY 1 cut(s) 135
XspI CTAG 2 cut(s) 83, 294
ZrmI AGTACT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.