Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Reverse (-)

1205457 .. 1206046

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G017600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCCAAGCTCTTTGCTCCCTTGTACTTGCTTCTCGCCCTCTTTGTATTCACCTCAGTAAGAAGAATGGTGCCAATGGTGAATGCCGATGAATGTTCACTAGCATCTATTGGCGGCGGTTGTCCTGACGAGGACGAGTGCACCATGACATGCATTACTTGTTATCGGAATGTTGGGCATGTCAGATCCTACTGTCGTTCTGGTGGCGGAGGGATTCCATTTGATTCATGTATTTGTGTCATGTCCGACGGTGCTCCTTGCAACCCTATTGGTCCACCAAAGTGCCCGAACTGGCCTCGATCTACTTCTGCTGCTGCCAATTTCACCGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

11.79

Weight (kDa)

6.5

Isoelectric Point (pI)

57.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AciI	CCGC	4 cut(s)	114, 117, 207, 327
AclWI	GGATC	1 cut(s)	180
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	26
AleI	CACNNNNGTG	1 cut(s)	280
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw21I	GWGCWC	2 cut(s)	143, 256
Alw44I	GTGCAC	1 cut(s)	139
AlwI	GGATC	1 cut(s)	180
AoxI	GGCC	2 cut(s)	3, 293
ApaLI	GTGCAC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	311, 314
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	3 cut(s)	43, 91, 316
AvaII	GGWCC	1 cut(s)	272
BaeGI	GKGCMC	2 cut(s)	143, 287
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	70
Bbv12I	GWGCWC	2 cut(s)	143, 256
BbvI	GCAGC	2 cut(s)	298, 301
BfaI	CTAG	1 cut(s)	101
BisI	GCNGC	3 cut(s)	115, 312, 315
BlsI	GCNGC	3 cut(s)	116, 313, 316
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	296
BseSI	GKGCMC	2 cut(s)	143, 287
BseXI	GCAGC	2 cut(s)	298, 301
BshFI	GGCC	2 cut(s)	5, 295
BshNI	GGYRCC	1 cut(s)	70
BsiHKAI	GWGCWC	2 cut(s)	143, 256
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	5, 295
Bsp1286I	GDGCHC	3 cut(s)	143, 256, 287
Bsp143I	GATC	2 cut(s)	185, 299
BspACI	CCGC	4 cut(s)	114, 117, 207, 327
BspANI	GGCC	2 cut(s)	5, 295
BspCNI	CTCAG	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	296
BssMI	GATC	2 cut(s)	185, 299
Bst4CI	ACNGT	2 cut(s)	194, 251
BstDEI	CTNAG	1 cut(s)	55
BstKTI	GATC	2 cut(s)	188, 302
BstMBI	GATC	2 cut(s)	185, 299
BstNSI	RCATGY	2 cut(s)	153, 182
BstSLI	GKGCMC	2 cut(s)	143, 287
BstV1I	GCAGC	2 cut(s)	298, 301
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	5, 295
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	5 cut(s)	145, 150, 179, 228, 241
CviJI	RGCY	3 cut(s)	5, 10, 295
CviKI_1	RGCY	3 cut(s)	5, 10, 295
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	2 cut(s)	187, 301
DpnII	GATC	2 cut(s)	185, 299
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	272
EcoT22I	ATGCAT	1 cut(s)	155
FaeI	CATG	5 cut(s)	148, 153, 182, 231, 244
FaiI	YATR	5 cut(s)	146, 151, 180, 229, 242
FatI	CATG	5 cut(s)	144, 149, 178, 227, 240
Fnu4HI	GCNGC	3 cut(s)	115, 312, 315
Fsp4HI	GCNGC	3 cut(s)	115, 312, 315
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	3 cut(s)	115, 312, 315
HaeIII	GGCC	2 cut(s)	5, 295
Hin1II	CATG	5 cut(s)	148, 153, 182, 231, 244
HinfI	GANTC	2 cut(s)	214, 224
HphI	GGTGA	3 cut(s)	43, 91, 316
Hpy166II	GTNNAC	3 cut(s)	98, 141, 275
Hpy188I	TCNGA	3 cut(s)	168, 185, 247
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	3 cut(s)	98, 141, 275
Hpy99I	CGWCG	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	194, 251
HpyCH4V	TGCA	3 cut(s)	141, 153, 261
HpyF3I	CTNAG	1 cut(s)	55
Hsp92II	CATG	5 cut(s)	148, 153, 182, 231, 244
Kzo9I	GATC	2 cut(s)	185, 299
LmnI	GCTCC	2 cut(s)	22, 259
LpnPI	CCDG	3 cut(s)	138, 186, 277
Lsp1109I	GCAGC	2 cut(s)	298, 301
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	101
MalI	GATC	2 cut(s)	187, 301
MboI	GATC	2 cut(s)	185, 299
MboII	GAAGA	1 cut(s)	75
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	3 cut(s)	143, 256, 287
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	319, 331
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	5 cut(s)	50, 64, 124, 203, 306
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	334
MslI	CAYNNNNRTG	1 cut(s)	280
Msp20I	TGGCCA	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	88
NdeII	GATC	2 cut(s)	185, 299
NlaIII	CATG	5 cut(s)	148, 153, 182, 231, 244
NlaIV	GGNNCC	1 cut(s)	72
NsiI	ATGCAT	1 cut(s)	155
NspI	RCATGY	2 cut(s)	153, 182
OliI	CACNNNNGTG	1 cut(s)	280
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	214, 224
PkrI	GCNGC	3 cut(s)	116, 313, 316
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	334
SatI	GCNGC	3 cut(s)	115, 312, 315
Sau3AI	GATC	2 cut(s)	185, 299
Sau96I	GGNCC	1 cut(s)	272
SduI	GDGCHC	3 cut(s)	143, 256, 287
SetI	ASST	2 cut(s)	12, 56
SfaNI	GCATC	1 cut(s)	113
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	280
Sse9I	AATT	2 cut(s)	319, 331
SsiI	CCGC	4 cut(s)	114, 117, 207, 327
SspMI	CTAG	1 cut(s)	101
TaaI	ACNGT	2 cut(s)	194, 251
TaqI	TCGA	1 cut(s)	298
TasI	AATT	2 cut(s)	319, 331
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	2 cut(s)	214, 224
Tru1I	TTAA	1 cut(s)	334
Tru9I	TTAA	1 cut(s)	334
TseI	GCWGC	2 cut(s)	311, 314
TspDTI	ATGAA	2 cut(s)	105, 216
VneI	GTGCAC	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	272
XceI	RCATGY	2 cut(s)	153, 182
XspI	CTAG	1 cut(s)	101
Zsp2I	ATGCAT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.