Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Reverse (-)

21596974 .. 21597519

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028342

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAATTTTAAAAATCTGGTAAAAGAAATAAGACGAGGCTCTCGTTGCCTCTCTAAACACTACGGTTTCCCTGTCAAAAATTTCCTCGTCAGACGGCGCACCCTCGTCGGCGCGGGCCTCTGGCGTTGTCGGTGGGTGGCGCGTGCAGCCGGACGGGCTCTAGACTTCGTGGTGATGTTTCTATCAGATGGCGAGGATGGTGGTGGCCGGGTTTGGGCCGCTATTGAGGCTGAATCTTTCGCTCTCGATTGGATCGGATTAGATCTCAGGTTGAGTGGGTTGGACGGCCGGATAGGCAATAGTGCTTGGCAAGGGATGGATAGGGCCAGGCGGTTTGGAGGGATGAGGTTCAGATCGGTTGGCGATCTGCCTGTTTTGGTGGCTGGGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.53

Weight (kDa)

11.17

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	113, 142
AciI	CCGC	3 cut(s)	113, 219, 331
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	2 cut(s)	205, 286
AcsI	RAATTY	2 cut(s)	4, 79
AfiI	CCNNNNNNNGG	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	326
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	5 cut(s)	115, 205, 216, 286, 324
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	2 cut(s)	4, 79
AspLEI	GCGC	3 cut(s)	99, 113, 142
AspS9I	GGNCC	3 cut(s)	115, 216, 324
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	184
BanII	GRGCYC	2 cut(s)	160, 390
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	3 cut(s)	182, 191, 310
BceAI	ACGGC	2 cut(s)	110, 301
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	209
BfaI	CTAG	2 cut(s)	161, 391
BglI	GCCNNNNNGGC	2 cut(s)	155, 294
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	2 cut(s)	147, 219
BlsI	GCNGC	2 cut(s)	148, 220
Bme1390I	CCNGG	2 cut(s)	209, 328
BmgT120I	GGNCC	3 cut(s)	115, 216, 324
BmrFI	CCNGG	2 cut(s)	209, 328
BpuMI	CCSGG	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	202, 321, 348
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	280
BseX3I	CGGCCG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	158
BseYI	CCCAGC	1 cut(s)	383
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	2 cut(s)	113, 142
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	5 cut(s)	117, 207, 218, 288, 326
BsiEI	CGRYCG	1 cut(s)	289
BsiSI	CCGG	3 cut(s)	150, 208, 289
BslI	CCNNNNNNNGG	1 cut(s)	214
BsnI	GGCC	5 cut(s)	117, 207, 218, 288, 326
Bsp1286I	GDGCHC	2 cut(s)	160, 390
Bsp143I	GATC	4 cut(s)	252, 262, 353, 364
BspACI	CCGC	3 cut(s)	113, 219, 331
BspANI	GGCC	5 cut(s)	117, 207, 218, 288, 326
BspCNI	CTCAG	1 cut(s)	279
BspFNI	CGCG	2 cut(s)	113, 142
BspPI	GGATC	1 cut(s)	260
BssMI	GATC	4 cut(s)	252, 262, 353, 364
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	115, 144
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	3 cut(s)	202, 321, 348
BstFNI	CGCG	2 cut(s)	113, 142
BstHHI	GCGC	3 cut(s)	99, 113, 142
BstKTI	GATC	4 cut(s)	255, 265, 356, 367
BstMBI	GATC	4 cut(s)	252, 262, 353, 364
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 146, 155, 227, 294
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	2 cut(s)	207, 326
BstUI	CGCG	2 cut(s)	113, 142
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BstZI	CGGCCG	1 cut(s)	286
BsuRI	GGCC	5 cut(s)	117, 207, 218, 288, 326
BtsCI	GGATG	3 cut(s)	202, 321, 348
Cac8I	GCNNGC	2 cut(s)	115, 144
CfoI	GCGC	3 cut(s)	99, 113, 142
Cfr13I	GGNCC	3 cut(s)	115, 216, 324
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	4 cut(s)	254, 264, 355, 366
DpnII	GATC	4 cut(s)	252, 262, 353, 364
DraI	TTTAAA	1 cut(s)	10
EaeI	YGGCCR	2 cut(s)	205, 286
EagI	CGGCCG	1 cut(s)	286
EclXI	CGGCCG	1 cut(s)	286
Eco24I	GRGCYC	2 cut(s)	160, 390
Eco52I	CGGCCG	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	326
EcoT38I	GRGCYC	2 cut(s)	160, 390
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	147, 219
FokI	GGATG	3 cut(s)	209, 328, 355
FriOI	GRGCYC	2 cut(s)	160, 390
Fsp4HI	GCNGC	2 cut(s)	147, 219
FspBI	CTAG	2 cut(s)	161, 391
GlaI	GCGC	3 cut(s)	98, 112, 141
GluI	GCNGC	2 cut(s)	147, 219
GsaI	CCCAGC	1 cut(s)	387
HaeIII	GGCC	5 cut(s)	117, 207, 218, 288, 326
HapII	CCGG	3 cut(s)	150, 208, 289
HhaI	GCGC	3 cut(s)	99, 113, 142
Hin6I	GCGC	3 cut(s)	97, 111, 140
HinP1I	GCGC	3 cut(s)	97, 111, 140
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	3 cut(s)	150, 208, 289
HphI	GGTGA	1 cut(s)	184
Hpy188I	TCNGA	4 cut(s)	92, 187, 257, 353
Hpy188III	TCNNGA	2 cut(s)	161, 245
Hpy99I	CGWCG	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 146, 155, 227, 294
HpyF3I	CTNAG	1 cut(s)	266
HspAI	GCGC	3 cut(s)	97, 111, 140
Kzo9I	GATC	4 cut(s)	252, 262, 353, 364
Lsp1109I	GCAGC	1 cut(s)	158
MaeI	CTAG	2 cut(s)	161, 391
MalI	GATC	4 cut(s)	254, 264, 355, 366
MboI	GATC	4 cut(s)	252, 262, 353, 364
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	160, 390
MluCI	AATT	2 cut(s)	4, 79
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	9 cut(s)	29, 59, 95, 113, 128, 187, 220, 332, 339
MseI	TTAA	1 cut(s)	9
MspI	CCGG	3 cut(s)	150, 208, 289
MspR9I	CCNGG	2 cut(s)	209, 328
MvaI	CCWGG	1 cut(s)	328
MvnI	CGCG	2 cut(s)	113, 142
MwoI	GCNNNNNNNGC	5 cut(s)	45, 146, 155, 227, 294
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	4 cut(s)	252, 262, 353, 364
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	148, 220
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	326
PspPI	GGNCC	3 cut(s)	115, 216, 324
PsuI	RGATCY	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	2 cut(s)	147, 219
Sau3AI	GATC	4 cut(s)	252, 262, 353, 364
Sau96I	GGNCC	3 cut(s)	115, 216, 324
ScrFI	CCNGG	2 cut(s)	209, 328
SduI	GDGCHC	2 cut(s)	160, 390
SetI	ASST	2 cut(s)	272, 350
Sse9I	AATT	2 cut(s)	4, 79
SsiI	CCGC	3 cut(s)	113, 219, 331
SspMI	CTAG	2 cut(s)	161, 391
StyD4I	CCNGG	2 cut(s)	207, 326
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	1 cut(s)	246
TasI	AATT	2 cut(s)	4, 79
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	2 cut(s)	4, 79
XbaI	TCTAGA	1 cut(s)	160
XspI	CTAG	2 cut(s)	161, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.