Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Forward (+)

17410612 .. 17415162

Gene Structure 4551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001555

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCTTCTCTCAGATGGCGAGGATGATGGTGGCCGAGATTGGGCTACTGTTGAGATTGAAACCCTCAATCCCGATTGGATCCGATCGGATCTCAGGTTGGGTGGGTTGGATGGCCGGATAGGCAACGGTGCTTGGCAAGGGATTGCGGGGGACAGGCGGTTTGGAGGGATGGGGTGGAGGTTTAGCGTCGGTGCAGCTACATTTTTGATCCGTGGTTCTGGTGTCTCGAATTCTTTGTTGGTGTTTTGGCTGCTTGGGTTCAGATCGGTTGGTGATTTGCCTCTTTGGGTGGCTGGGCTCTGGAAGGAGGTCGGGACATGGCAGAGGCGCGAACGCATCTTCGATCTCCCTCTCATAGAACTCATCCAGTCGCCGCCTGTTCTCGCGCATCCCATCTCAATCTCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.02

Weight (kDa)

5.06

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	330, 386
AciI	CCGC	3 cut(s)	146, 157, 374
AclWI	GGATC	4 cut(s)	73, 86, 96, 202
AcoI	YGGCCR	2 cut(s)	31, 112
AcsI	RAATTY	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	59
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	4 cut(s)	73, 86, 96, 202
AoxI	GGCC	2 cut(s)	31, 112
ApeKI	GCWGC	2 cut(s)	194, 250
ApoI	RAATTY	1 cut(s)	229
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspLEI	GCGC	2 cut(s)	330, 388
AsuHPI	GGTGA	1 cut(s)	284
BamHI	GGATCC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	206, 237
BccI	CCATC	5 cut(s)	8, 20, 104, 163, 401
BcoDI	GTCTC	1 cut(s)	229
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	3 cut(s)	195, 251, 374
BlsI	GCNGC	3 cut(s)	196, 252, 375
BmiI	GGNNCC	1 cut(s)	80
BmsI	GCATC	2 cut(s)	345, 397
BsaJI	CCNNGG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	5 cut(s)	28, 115, 174, 363, 388
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	2 cut(s)	24, 106
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	206, 237
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	213
Bsh1236I	CGCG	2 cut(s)	330, 386
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	33, 114
BsiEI	CGRYCG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	115
BslFI	GGGAC	2 cut(s)	164, 328
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	2 cut(s)	164, 328
BsnI	GGCC	2 cut(s)	33, 114
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	6 cut(s)	78, 83, 88, 207, 263, 343
BspACI	CCGC	3 cut(s)	146, 157, 374
BspANI	GGCC	2 cut(s)	33, 114
BspCNI	CTCAG	2 cut(s)	23, 105
BspFNI	CGCG	2 cut(s)	330, 386
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	4 cut(s)	73, 86, 96, 202
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	6 cut(s)	78, 83, 88, 207, 263, 343
Bst4CI	ACNGT	2 cut(s)	49, 128
BstDEI	CTNAG	2 cut(s)	10, 92
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	5 cut(s)	28, 115, 174, 363, 388
BstFNI	CGCG	2 cut(s)	330, 386
BstHHI	GCGC	2 cut(s)	330, 388
BstKTI	GATC	6 cut(s)	81, 86, 91, 210, 266, 346
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	6 cut(s)	78, 83, 88, 207, 263, 343
BstMCI	CGRYCG	1 cut(s)	86
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstUI	CGCG	2 cut(s)	330, 386
BstV1I	GCAGC	2 cut(s)	206, 237
BstX2I	RGATCY	2 cut(s)	78, 88
BstYI	RGATCY	2 cut(s)	78, 88
BsuRI	GGCC	2 cut(s)	33, 114
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	5 cut(s)	28, 115, 174, 363, 388
CfoI	GCGC	2 cut(s)	330, 388
CseI	GACGC	1 cut(s)	175
CviAII	CATG	1 cut(s)	318
CviJI	RGCY	7 cut(s)	33, 44, 114, 197, 250, 293, 298
CviKI_1	RGCY	7 cut(s)	33, 44, 114, 197, 250, 293, 298
DdeI	CTNAG	2 cut(s)	10, 92
DpnI	GATC	6 cut(s)	80, 85, 90, 209, 265, 345
DpnII	GATC	6 cut(s)	78, 83, 88, 207, 263, 343
EaeI	YGGCCR	2 cut(s)	31, 112
Eco24I	GRGCYC	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	1 cut(s)	321
FaiI	YATR	2 cut(s)	319, 356
FaqI	GGGAC	2 cut(s)	164, 328
FatI	CATG	1 cut(s)	317
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	3 cut(s)	195, 251, 374
FokI	GGATG	5 cut(s)	35, 122, 181, 350, 375
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	3 cut(s)	195, 251, 374
GlaI	GCGC	2 cut(s)	329, 387
GluI	GCNGC	3 cut(s)	195, 251, 374
GsaI	CCCAGC	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	33, 114
HapII	CCGG	1 cut(s)	115
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	330, 388
Hin1II	CATG	1 cut(s)	321
Hin6I	GCGC	2 cut(s)	328, 386
HinP1I	GCGC	2 cut(s)	328, 386
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	4 cut(s)	13, 83, 88, 263
Hpy188III	TCNNGA	4 cut(s)	71, 226, 301, 313
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	2 cut(s)	49, 128
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	2 cut(s)	10, 92
Hsp92II	CATG	1 cut(s)	321
HspAI	GCGC	2 cut(s)	328, 386
Kzo9I	GATC	6 cut(s)	78, 83, 88, 207, 263, 343
LpnPI	CCDG	8 cut(s)	79, 128, 139, 204, 279, 286, 380, 390
Lsp1109I	GCAGC	2 cut(s)	206, 237
LweI	GCATC	2 cut(s)	345, 397
MalI	GATC	6 cut(s)	80, 85, 90, 209, 265, 345
MboI	GATC	6 cut(s)	78, 83, 88, 207, 263, 343
MboII	GAAGA	1 cut(s)	331
MflI	RGATCY	2 cut(s)	78, 88
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	8 cut(s)	13, 74, 158, 171, 291, 301, 318, 360
MspI	CCGG	1 cut(s)	115
MvnI	CGCG	2 cut(s)	330, 386
MwoI	GCNNNNNNNGC	1 cut(s)	120
NdeII	GATC	6 cut(s)	78, 83, 88, 207, 263, 343
NlaIII	CATG	1 cut(s)	321
NlaIV	GGNNCC	1 cut(s)	80
NmeAIII	GCCGAG	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	196, 252, 375
Ple19I	CGATCG	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	80
PsuI	RGATCY	2 cut(s)	78, 88
PvuI	CGATCG	1 cut(s)	86
SatI	GCNGC	3 cut(s)	195, 251, 374
Sau3AI	GATC	6 cut(s)	78, 83, 88, 207, 263, 343
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	4 cut(s)	98, 182, 199, 312
SfaNI	GCATC	2 cut(s)	345, 397
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	3 cut(s)	146, 157, 374
TaaI	ACNGT	2 cut(s)	49, 128
TaqI	TCGA	2 cut(s)	227, 342
TasI	AATT	1 cut(s)	229
TauI	GCSGC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	194, 250
TspGWI	ACGGA	1 cut(s)	200
XapI	RAATTY	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.