Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Forward (+)

67721593 .. 67731210

Gene Structure 9618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAACAATCATAAATTATGTAATCTAGCAGTCGAGAGAGGAGGCCTCCGAGCAATACGGAGCGACCTCGAGGGTGCGAAACCTAGGGTTTCGTGTGGAGGCGACGACCGTGCGGTGTCCGGACCGGGGCGACGGCGAGAAGATGGAGCGGCAGATTTTGAGGTCCCGGCAGCGGCACTTGTTGAAGGAGTTGCAGCTGCAGCTCTTTTGGAGACTTTTGCGGACTTTGAGCTTGAGGTTCCAGCTTTGGCGTTGGTTCTTCTTCATCACTTTCAGCAGCTCTTTGCTTTTCCCTTTGCTACATCTACAACAACTCAAGAAGTGATGAACACAGAGTCATCAATTATCCGACCCCAAATAGATGTGTCCTCCTCTCTAGCCATTATAGCTTGGACGACTTGCAGACAATCCCCTTCAAAACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.15

Weight (kDa)

5.58

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	119
AciI	CCGC	4 cut(s)	113, 149, 173, 221
AfiI	CCNNNNNNNGG	2 cut(s)	126, 172
AgsI	TTSAA	2 cut(s)	185, 417
AluBI	AGCT	6 cut(s)	197, 203, 232, 245, 280, 389
AluI	AGCT	6 cut(s)	197, 203, 232, 245, 280, 389
Alw26I	GTCTC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	68
Aor13HI	TCCGGA	1 cut(s)	119
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	5 cut(s)	170, 194, 197, 200, 277
AspA2I	CCTAGG	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	122, 163
AsuC2I	CCSGG	2 cut(s)	126, 167
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	2 cut(s)	122, 163
AvrII	CCTAGG	1 cut(s)	83
BbvI	GCAGC	5 cut(s)	182, 184, 206, 212, 289
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	1 cut(s)	149
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BcnI	CCSGG	2 cut(s)	126, 167
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	3 cut(s)	26, 84, 377
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	7 cut(s)	150, 171, 174, 195, 198, 201, 278
BlnI	CCTAGG	1 cut(s)	83
BlsI	GCNGC	7 cut(s)	151, 172, 175, 196, 199, 202, 279
Bme1390I	CCNGG	2 cut(s)	126, 167
Bme18I	GGWCC	2 cut(s)	122, 163
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	122, 163
BmiI	GGNNCC	2 cut(s)	165, 240
BmrFI	CCNGG	2 cut(s)	126, 167
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BpuEI	CTTGAG	2 cut(s)	254, 300
BpuMI	CCSGG	2 cut(s)	126, 167
BsaJI	CCNNGG	2 cut(s)	83, 125
BsaWI	WCCGGW	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 172
BseAI	TCCGGA	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	83, 125
BseLI	CCNNNNNNNGG	2 cut(s)	126, 172
BseRI	GAGGAG	2 cut(s)	54, 361
BseXI	GCAGC	5 cut(s)	182, 184, 206, 212, 289
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	45
BsiEI	CGRYCG	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	3 cut(s)	120, 125, 167
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	126, 172
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	68
Bsp13I	TCCGGA	1 cut(s)	119
BspACI	CCGC	4 cut(s)	113, 149, 173, 221
BspANI	GGCC	1 cut(s)	45
BspEI	TCCGGA	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	165, 240
BspMAI	CTGCAG	1 cut(s)	202
BsrBI	CCGCTC	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	83, 125
BssT1I	CCWWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	110
BstMAI	GTCTC	1 cut(s)	206
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 386
BstSCI	CCNGG	2 cut(s)	124, 165
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	5 cut(s)	182, 184, 206, 212, 289
BsuRI	GGCC	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	122, 163
CpoI	CGGWCCG	1 cut(s)	122
CspI	CGGWCCG	1 cut(s)	122
CviJI	RGCY	8 cut(s)	45, 197, 203, 232, 245, 280, 380, 389
CviKI_1	RGCY	8 cut(s)	45, 197, 203, 232, 245, 280, 380, 389
Eco130I	CCWWGG	1 cut(s)	83
Eco147I	AGGCCT	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	122, 163
Eco88I	CYCGRG	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaiI	YATR	3 cut(s)	12, 19, 386
FaqI	GGGAC	1 cut(s)	149
Fnu4HI	GCNGC	7 cut(s)	150, 171, 174, 195, 198, 201, 278
Fsp4HI	GCNGC	7 cut(s)	150, 171, 174, 195, 198, 201, 278
FspBI	CTAG	3 cut(s)	26, 84, 377
GluI	GCNGC	7 cut(s)	150, 171, 174, 195, 198, 201, 278
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	3 cut(s)	120, 125, 167
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	3 cut(s)	120, 125, 167
Hpy188I	TCNGA	2 cut(s)	50, 350
Hpy188III	TCNNGA	3 cut(s)	34, 120, 317
Hpy99I	CGWCG	2 cut(s)	107, 135
HpyAV	CCTTC	2 cut(s)	179, 423
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	3 cut(s)	194, 200, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 386
Kpn2I	TCCGGA	1 cut(s)	119
LmnI	GCTCC	2 cut(s)	60, 146
LpnPI	CCDG	4 cut(s)	133, 138, 180, 255
Lsp1109I	GCAGC	5 cut(s)	182, 184, 206, 212, 289
MaeI	CTAG	3 cut(s)	26, 84, 377
MbiI	CCGCTC	1 cut(s)	149
MboII	GAAGA	3 cut(s)	152, 251, 254
MluCI	AATT	2 cut(s)	14, 342
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	373
MroI	TCCGGA	1 cut(s)	119
MspA1I	CMGCKG	2 cut(s)	173, 197
MspI	CCGG	3 cut(s)	120, 125, 167
MspR9I	CCNGG	2 cut(s)	126, 167
MwoI	GCNNNNNNNGC	2 cut(s)	200, 386
NciI	CCSGG	2 cut(s)	126, 167
NlaIV	GGNNCC	2 cut(s)	165, 240
PaeR7I	CTCGAG	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	45
PkrI	GCNGC	7 cut(s)	151, 172, 175, 196, 199, 202, 279
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	165, 240
PspPI	GGNCC	2 cut(s)	122, 163
PspPPI	RGGWCCY	1 cut(s)	163
PspXI	VCTCGAGB	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	197
Rsr2I	CGGWCCG	1 cut(s)	122
RsrII	CGGWCCG	1 cut(s)	122
SatI	GCNGC	7 cut(s)	150, 171, 174, 195, 198, 201, 278
Sau96I	GGNCC	2 cut(s)	122, 163
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	2 cut(s)	126, 167
SfcI	CTRYAG	1 cut(s)	198
Sfr274I	CTCGAG	1 cut(s)	68
SinI	GGWCC	2 cut(s)	122, 163
SlaI	CTCGAG	1 cut(s)	68
SmlI	CTYRAG	3 cut(s)	68, 233, 315
SmoI	CTYRAG	3 cut(s)	68, 233, 315
Sse9I	AATT	2 cut(s)	14, 342
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	4 cut(s)	113, 149, 173, 221
SspMI	CTAG	3 cut(s)	26, 84, 377
StuI	AGGCCT	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	124, 165
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	2 cut(s)	33, 69
TasI	AATT	2 cut(s)	14, 342
TauI	GCSGC	2 cut(s)	152, 176
TseI	GCWGC	5 cut(s)	170, 194, 197, 200, 277
TspDTI	ATGAA	3 cut(s)	17, 254, 341
TspGWI	ACGGA	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	122, 163
XhoI	CTCGAG	1 cut(s)	68
XmaJI	CCTAGG	1 cut(s)	83
XspI	CTAG	3 cut(s)	26, 84, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.