Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Reverse (-)

25086300 .. 25089102

Gene Structure 2803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008064

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCATCGAGCATGAATGCCAATGATTGTAGCCTAGCTGTAAATACTGGTGGTTGTCCTGATAAAGAGGCGTGTCGTGTAACATGTAGTGGTTGCTTTCGTGGTATTGGGAAGATCATCGCATTTTGCAAAACTGAAGGTTCACCAATTCCGGTTACGCAGTGTGTTTGTGTGATGACTGAAGATTGCTGGGCTTGGCAAGGGATGGCTGGGGACAGGCGGATCAGAGGGAGGAGATGGAGGATTCTGGTCGCTATAGTTGAAGCTACACAATCGATCTGTGGTTCTGAGGCTGCGTTTTCTCTGACAGAGTTCATGTCAGAAATCATGGCTGGGTGTTGGTTGGAGATCATGGCAAGGCGGAAGTTTCCGGTGGCTGGGTTTTGGTTGGAGATCATGGCAAGGCGAAGGTGCAGTGATGGTGACGTGGTGGTGGCAGTGGCAGCAACAGCGCTGATCTTCCAGTCATCAAATCATCAAATTAGCATCATTAGATCCTCCTCATCTCCATCTGCATCATCATCGATTTCCAGATCTTGCGGTCTTCGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

19.93

Weight (kDa)

8.77

Isoelectric Point (pI)

76.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	220, 361, 540, 550
AclWI	GGATC	2 cut(s)	230, 489
AcuI	CTGAAG	2 cut(s)	156, 201
AfeI	AGCGCT	1 cut(s)	453
AfiI	CCNNNNNNNGG	1 cut(s)	377
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	263
AjiI	CACGTC	1 cut(s)	427
AluBI	AGCT	2 cut(s)	38, 266
AluI	AGCT	2 cut(s)	38, 266
AlwI	GGATC	2 cut(s)	230, 489
Aor51HI	AGCGCT	1 cut(s)	453
ApeKI	GCWGC	2 cut(s)	293, 443
AspLEI	GCGC	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	135, 434
BbsI	GAAGAC	1 cut(s)	536
BbvI	GCAGC	2 cut(s)	280, 455
BccI	CCATC	4 cut(s)	199, 231, 413, 517
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	455
BglII	AGATCT	1 cut(s)	533
BisI	GCNGC	2 cut(s)	294, 444
BlsI	GCNGC	2 cut(s)	295, 445
BmgBI	CACGTC	1 cut(s)	427
BmsI	GCATC	3 cut(s)	14, 495, 524
BpiI	GAAGAC	1 cut(s)	536
Bsa29I	ATCGAT	2 cut(s)	275, 524
BsaWI	WCCGGW	2 cut(s)	151, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	2 cut(s)	52, 463
BseCI	ATCGAT	2 cut(s)	275, 524
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	2 cut(s)	52, 463
BseRI	GAGGAG	2 cut(s)	247, 490
BseXI	GCAGC	2 cut(s)	280, 455
BseYI	CCCAGC	4 cut(s)	189, 209, 332, 377
BsgI	GTGCAG	1 cut(s)	433
BshVI	ATCGAT	2 cut(s)	275, 524
BsiSI	CCGG	2 cut(s)	152, 371
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	22
Bsp143I	GATC	8 cut(s)	114, 222, 276, 348, 393, 456, 494, 533
BspACI	CCGC	4 cut(s)	220, 361, 540, 550
BspCNI	CTCAG	1 cut(s)	280
BspDI	ATCGAT	2 cut(s)	275, 524
BspPI	GGATC	2 cut(s)	230, 489
BsrI	ACTGG	2 cut(s)	52, 463
BssMI	GATC	8 cut(s)	114, 222, 276, 348, 393, 456, 494, 533
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	8 cut(s)	117, 225, 279, 351, 396, 459, 497, 536
BstMBI	GATC	8 cut(s)	114, 222, 276, 348, 393, 456, 494, 533
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 449
BstNSI	RCATGY	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	280, 455
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	2 cut(s)	494, 533
BstYI	RGATCY	2 cut(s)	494, 533
Bsu15I	ATCGAT	2 cut(s)	275, 524
BsuTUI	ATCGAT	2 cut(s)	275, 524
BtgZI	GCGATG	1 cut(s)	103
BtrI	CACGTC	1 cut(s)	427
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	3 cut(s)	167, 421, 444
BtsIMutI	CAGTG	3 cut(s)	167, 421, 444
CfoI	GCGC	1 cut(s)	454
ClaI	ATCGAT	2 cut(s)	275, 524
CviAII	CATG	6 cut(s)	13, 84, 316, 328, 352, 397
CviJI	RGCY	8 cut(s)	33, 38, 194, 209, 266, 293, 332, 377
CviKI_1	RGCY	8 cut(s)	33, 38, 194, 209, 266, 293, 332, 377
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	8 cut(s)	116, 224, 278, 350, 395, 458, 496, 535
DpnII	GATC	8 cut(s)	114, 222, 276, 348, 393, 456, 494, 533
EciI	GGCGGA	2 cut(s)	235, 376
Eco47III	AGCGCT	1 cut(s)	453
Eco57I	CTGAAG	2 cut(s)	156, 201
FaeI	CATG	6 cut(s)	16, 87, 319, 331, 355, 400
FaiI	YATR	7 cut(s)	14, 85, 257, 317, 329, 353, 398
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	6 cut(s)	12, 83, 315, 327, 351, 396
Fnu4HI	GCNGC	2 cut(s)	294, 444
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	2 cut(s)	294, 444
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	2 cut(s)	294, 444
GsaI	CCCAGC	4 cut(s)	193, 213, 336, 381
HaeII	RGCGCY	1 cut(s)	455
HapII	CCGG	2 cut(s)	152, 371
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	6 cut(s)	16, 87, 319, 331, 355, 400
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	2 cut(s)	152, 371
HphI	GGTGA	2 cut(s)	135, 434
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	4 cut(s)	227, 289, 306, 322
Hpy188III	TCNNGA	2 cut(s)	59, 531
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	131, 402
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	3 cut(s)	129, 414, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 449
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	6 cut(s)	16, 87, 319, 331, 355, 400
HspAI	GCGC	1 cut(s)	452
Kzo9I	GATC	8 cut(s)	114, 222, 276, 348, 393, 456, 494, 533
Lsp1109I	GCAGC	2 cut(s)	280, 455
LweI	GCATC	3 cut(s)	14, 495, 524
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	3 cut(s)	79, 154, 422
MalI	GATC	8 cut(s)	116, 224, 278, 350, 395, 458, 496, 535
MboI	GATC	8 cut(s)	114, 222, 276, 348, 393, 456, 494, 533
MboII	GAAGA	4 cut(s)	124, 194, 451, 536
MflI	RGATCY	2 cut(s)	494, 533
MluCI	AATT	2 cut(s)	147, 480
MmeI	TCCRAC	2 cut(s)	324, 369
MnlI	CCTC	7 cut(s)	61, 221, 225, 234, 283, 508, 511
MspI	CCGG	2 cut(s)	152, 371
Mva1269I	GAATGC	1 cut(s)	22
MwoI	GCNNNNNNNGC	2 cut(s)	443, 449
NdeII	GATC	8 cut(s)	114, 222, 276, 348, 393, 456, 494, 533
NlaIII	CATG	6 cut(s)	16, 87, 319, 331, 355, 400
NmuCI	GTSAC	1 cut(s)	422
NspI	RCATGY	1 cut(s)	87
PciI	ACATGT	1 cut(s)	83
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	295, 445
PscI	ACATGT	1 cut(s)	83
PspFI	CCCAGC	4 cut(s)	189, 209, 332, 377
PsuI	RGATCY	2 cut(s)	494, 533
SatI	GCNGC	2 cut(s)	294, 444
Sau3AI	GATC	8 cut(s)	114, 222, 276, 348, 393, 456, 494, 533
SetI	ASST	5 cut(s)	40, 142, 268, 413, 429
SfaNI	GCATC	3 cut(s)	14, 495, 524
SfcI	CTRYAG	1 cut(s)	255
Sse9I	AATT	2 cut(s)	147, 480
SsiI	CCGC	4 cut(s)	220, 361, 540, 550
SspMI	CTAG	1 cut(s)	35
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	3 cut(s)	8, 275, 524
TasI	AATT	2 cut(s)	147, 480
TfiI	GAWTC	1 cut(s)	244
TscAI	CASTG	3 cut(s)	167, 421, 444
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	2 cut(s)	293, 443
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	29, 304
TspRI	CASTG	3 cut(s)	167, 421, 444
XceI	RCATGY	1 cut(s)	87
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.