Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005550

Physical Location & Seq

Genomic Coordinates Reverse (-)

49436270 .. 49436579

Gene Structure 310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50407

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAGGATTCCGGTCGCCGTGGGTCGGTTGAAGCTATGCCATCGATCTGTGGTTCTGAGGTTGCATTTTCTCTGCCAGGGAGTTGGCTACGTGGGTTCAGGTCAGAGACCGATCTGAATGTTCAGGTGGCTGGGTTTTGGTTGGAGATGGCGGCAAGGCGGAGGTGCGGTGATGATGACGTGGTGGTGGCAGTGGCAGCGCTAGTTGGACTGTGGTTTTGTTGGATTGGGCTGGACCTGTGCTCCTTCCTTGCTGGGCCTAGTGGTTGTTGGGCCTGGGCTTTGGCTCAGGACCCATACTTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.17

Weight (kDa)

4.39

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005550)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G017500_v2.0.a1 Prupe.1G017600_v2.0.a1
pyrus_communis	pycom13g16870
rosa_chinensis	RchiOBHm_Chr2g0132851 RchiOBHm_Chr7g0188891
rosa_laevigata	RLG00000001555 RLG00000008064 RLG00000008964 RLG00000009141 RLG00000011119 RLG00000013874 RLG00000024120 RLG00000024597 RLG00000025787 RLG00000028337 RLG00000028342 RLG00000028739 RLG00000029763 RLG00000033639 RLG00000034814 RLG00000036610
rosa_roxburghii	Rroxscaffold_3G00219520 Rroxscaffold_7G00213310 Rroxscaffold_7G00217230
rosa_rugosa	Rorug04G0134700 Rorug05G0350200
rosa_samantha	Rh4AG195800 Rh6BG444200
rosa_wichuraiana	Rw4G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	152, 160, 168
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	32
AjiI	CACGTC	1 cut(s)	181
AjnI	CCWGG	2 cut(s)	76, 275
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	1 cut(s)	101
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	2 cut(s)	257, 273
ApeKI	GCWGC	1 cut(s)	197
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	4 cut(s)	235, 257, 273, 292
AsuHPI	GGTGA	1 cut(s)	182
AvaII	GGWCC	2 cut(s)	235, 292
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	2 cut(s)	49, 142
BceAI	ACGGC	1 cut(s)	3
BciT130I	CCWGG	2 cut(s)	78, 277
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	2 cut(s)	203, 261
BfoI	RGCGCY	1 cut(s)	203
BisI	GCNGC	2 cut(s)	153, 198
BlsI	GCNGC	2 cut(s)	154, 199
Bme1390I	CCNGG	2 cut(s)	78, 277
Bme18I	GGWCC	2 cut(s)	235, 292
BmgBI	CACGTC	1 cut(s)	181
BmgT120I	GGNCC	4 cut(s)	235, 257, 273, 292
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	2 cut(s)	78, 277
Bpu10I	CCTNAGC	1 cut(s)	288
Bsa29I	ATCGAT	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	3 cut(s)	19, 77, 276
BsaWI	WCCGGW	1 cut(s)	11
BsaXI	ACNNNNNCTCC	4 cut(s)	154, 184, 227, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
BseBI	CCWGG	2 cut(s)	78, 277
BseCI	ATCGAT	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	19, 77, 276
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	2 cut(s)	48, 302
BseXI	GCAGC	1 cut(s)	209
BseYI	CCCAGC	2 cut(s)	131, 254
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	2 cut(s)	259, 275
BshVI	ATCGAT	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	259, 275
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	45, 112
BspACI	CCGC	3 cut(s)	152, 160, 168
BspANI	GGCC	2 cut(s)	259, 275
BspCNI	CTCAG	2 cut(s)	49, 301
BspDI	ATCGAT	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	294
BspTNI	GGTCTC	1 cut(s)	101
BssECI	CCNNGG	3 cut(s)	19, 77, 276
BssMI	GATC	2 cut(s)	45, 112
Bst2UI	CCWGG	2 cut(s)	78, 277
Bst4CI	ACNGT	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	92
BstDEI	CTNAG	2 cut(s)	57, 288
BstDSI	CCRYGG	1 cut(s)	19
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	2 cut(s)	48, 115
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	2 cut(s)	45, 112
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	2 cut(s)	78, 277
BstSCI	CCNGG	2 cut(s)	76, 275
BstV1I	GCAGC	1 cut(s)	209
BstXI	CCANNNNNNTGG	1 cut(s)	84
Bsu15I	ATCGAT	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	259, 275
BsuTUI	ATCGAT	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	19
BtrI	CACGTC	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	4 cut(s)	235, 257, 273, 292
ClaI	ATCGAT	1 cut(s)	44
CviJI	RGCY	8 cut(s)	35, 88, 131, 232, 259, 275, 281, 287
CviKI_1	RGCY	8 cut(s)	35, 88, 131, 232, 259, 275, 281, 287
DdeI	CTNAG	2 cut(s)	57, 288
DpnI	GATC	2 cut(s)	47, 114
DpnII	GATC	2 cut(s)	45, 112
EciI	GGCGGA	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	235, 292
Eco47III	AGCGCT	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	2 cut(s)	76, 275
FaiI	YATR	2 cut(s)	38, 298
Fnu4HI	GCNGC	2 cut(s)	153, 198
Fsp4HI	GCNGC	2 cut(s)	153, 198
FspBI	CTAG	2 cut(s)	203, 261
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	2 cut(s)	153, 198
GsaI	CCCAGC	2 cut(s)	135, 258
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	259, 275
HapII	CCGG	1 cut(s)	12
HhaI	GCGC	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	182
Hpy188I	TCNGA	3 cut(s)	58, 106, 117
Hpy188III	TCNNGA	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4IV	ACGT	2 cut(s)	91, 180
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	57, 288
HpySE526I	ACGT	2 cut(s)	91, 180
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	45, 112
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	203, 261
MaeII	ACGT	2 cut(s)	91, 180
MalI	GATC	2 cut(s)	47, 114
MboI	GATC	2 cut(s)	45, 112
MhlI	GDGCHC	1 cut(s)	245
MmeI	TCCRAC	3 cut(s)	123, 187, 203
MnlI	CCTC	2 cut(s)	52, 156
MseI	TTAA	1 cut(s)	307
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	2 cut(s)	78, 277
MvaI	CCWGG	2 cut(s)	78, 277
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	2 cut(s)	45, 112
NlaIV	GGNNCC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	154, 199
Ppu21I	YACGTR	1 cut(s)	92
PpuMI	RGGWCCY	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	76, 275
PspFI	CCCAGC	2 cut(s)	131, 254
PspGI	CCWGG	2 cut(s)	76, 275
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	4 cut(s)	235, 257, 273, 292
PspPPI	RGGWCCY	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	307
SatI	GCNGC	2 cut(s)	153, 198
Sau3AI	GATC	2 cut(s)	45, 112
Sau96I	GGNCC	4 cut(s)	235, 257, 273, 292
ScrFI	CCNGG	2 cut(s)	78, 277
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	8 cut(s)	37, 63, 94, 104, 129, 167, 183, 240
SinI	GGWCC	2 cut(s)	235, 292
SsiI	CCGC	3 cut(s)	152, 160, 168
SspMI	CTAG	2 cut(s)	203, 261
StyD4I	CCNGG	2 cut(s)	76, 275
TaaI	ACNGT	1 cut(s)	213
TaiI	ACGT	2 cut(s)	94, 183
TaqI	TCGA	1 cut(s)	44
TaqII	GACCGA	1 cut(s)	125
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TscAI	CASTG	1 cut(s)	198
TseI	GCWGC	1 cut(s)	197
TspRI	CASTG	1 cut(s)	198
VpaK11BI	GGWCC	2 cut(s)	235, 292
XspI	CTAG	2 cut(s)	203, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.