PWWP domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27860 AT3G27860 AT5G40340 AT5G40340 |
| fragaria_vesca | FvH4_6g50890 FvH4_6g50890 |
| malus_domestica | MD09G1031100.v1.1 |
| prunus_persica | Prupe.3G286500_v2.0.a1 |
| pyrus_communis | pycom111g02480 pycom17g03040 |
| rosa_chinensis | RchiOBHm_Chr2g0172271 |
| rosa_laevigata | RLG00000006622 RLG00000018603 RLG00000022100 RLG00000024336 RLG00000028434 RLG00000037070 |
| rosa_multiflora | Rmu_sc0005277.1_g000016 Rmu_sc0017785.1_g000001 Rmu_sc0017786.1_g000001 Rmu_ssc0000103.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00328330 Rroxscaffold_5G00367520 |
| rosa_rugosa | Rorug02G0558300 |
| rosa_samantha | Rh2AG320200 Rh2AG320300 Rh2AG475500 Rh2AG535600 Rh2AG535700 Rh2AG633300 Rh2BG646900 Rh2CG519400 Rh2CG613900 Rh2DG573700 Rh2DG573800 Rh2DG661800 Rh4BG393600 Rh4CG408400 Rh5AG278200 Rh5BG282800 Rh6AG204800 Rh6AG204900 |
| rosa_wichuraiana | Rw2G052440 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2401 |
| Acc16I | TGCGCA | 1 cut(s) | 1718 |
| Acc36I | ACCTGC | 1 cut(s) | 2401 |
| AccB1I | GGYRCC | 1 cut(s) | 762 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1178 |
| AccBSI | CCGCTC | 3 cut(s) | 8, 1891, 2064 |
| AccII | CGCG | 1 cut(s) | 1291 |
| AclWI | GGATC | 3 cut(s) | 668, 2009, 2549 |
| AcoI | YGGCCR | 2 cut(s) | 1267, 2130 |
| AcsI | RAATTY | 6 cut(s) | 446, 796, 1305, 1554, 2212, 2468 |
| AcuI | CTGAAG | 2 cut(s) | 1005, 1881 |
| AcyI | GRCGYC | 1 cut(s) | 2750 |
| AfaI | GTAC | 1 cut(s) | 1796 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 36, 68, 137, 138, 1178, 1220, 1773, 2538, 2741 |
| AflII | CTTAAG | 1 cut(s) | 2536 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2703 |
| AjnI | CCWGG | 5 cut(s) | 136, 1177, 2227, 2419, 2687 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 978, 1010, 2594, 2626, 2828, 2860 |
| Alw21I | GWGCWC | 3 cut(s) | 161, 1092, 2312 |
| Alw26I | GTCTC | 5 cut(s) | 269, 1615, 1836, 2136, 2867 |
| AlwI | GGATC | 3 cut(s) | 668, 2009, 2549 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 50 |
| Ama87I | CYCGRG | 2 cut(s) | 115, 2523 |
| AoxI | GGCC | 6 cut(s) | 9, 656, 1223, 1267, 2130, 2416 |
| ApeKI | GCWGC | 5 cut(s) | 850, 903, 1584, 1935, 2069 |
| ApoI | RAATTY | 6 cut(s) | 446, 796, 1305, 1554, 2212, 2468 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 737, 769, 2569, 2573, 2601, 2605 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 798 |
| AspLEI | GCGC | 3 cut(s) | 1719, 2522, 2597 |
| AspS9I | GGNCC | 7 cut(s) | 10, 134, 144, 250, 1223, 1914, 2417 |
| AsuC2I | CCSGG | 2 cut(s) | 132, 1251 |
| AvaI | CYCGRG | 2 cut(s) | 115, 2523 |
| AvaII | GGWCC | 4 cut(s) | 134, 144, 250, 1914 |
| BaeGI | GKGCMC | 1 cut(s) | 2292 |
| BalI | TGGCCA | 2 cut(s) | 1269, 2132 |
| BanI | GGYRCC | 1 cut(s) | 762 |
| BanII | GRGCYC | 4 cut(s) | 161, 222, 1092, 2312 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1474, 1506 |
| BbsI | GAAGAC | 5 cut(s) | 558, 880, 1239, 1482, 2363 |
| Bbv12I | GWGCWC | 3 cut(s) | 161, 1092, 2312 |
| BbvI | GCAGC | 5 cut(s) | 862, 890, 1596, 1922, 2081 |
| BceAI | ACGGC | 4 cut(s) | 14, 127, 763, 830 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 169, 203 |
| BciT130I | CCWGG | 5 cut(s) | 138, 1179, 2229, 2421, 2689 |
| BciVI | GTATCC | 1 cut(s) | 265 |
| BclI | TGATCA | 1 cut(s) | 1276 |
| BcnI | CCSGG | 2 cut(s) | 132, 1251 |
| BcoDI | GTCTC | 5 cut(s) | 269, 1615, 1836, 2136, 2867 |
| BfaI | CTAG | 3 cut(s) | 402, 2040, 2045 |
| BfmI | CTRYAG | 4 cut(s) | 24, 1965, 2067, 2322 |
| BfoI | RGCGCY | 1 cut(s) | 2598 |
| BfrI | CTTAAG | 1 cut(s) | 2536 |
| BfuAI | ACCTGC | 1 cut(s) | 2401 |
| BfuI | GTATCC | 1 cut(s) | 265 |
| BisI | GCNGC | 6 cut(s) | 9, 851, 904, 1585, 1936, 2070 |
| BlsI | GCNGC | 6 cut(s) | 10, 852, 905, 1586, 1937, 2071 |
| BmcAI | AGTACT | 1 cut(s) | 1796 |
| Bme1390I | CCNGG | 7 cut(s) | 132, 138, 1179, 1251, 2229, 2421, 2689 |
| Bme18I | GGWCC | 4 cut(s) | 134, 144, 250, 1914 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2703 |
| BmeT110I | CYCGRG | 2 cut(s) | 115, 2523 |
| BmgT120I | GGNCC | 7 cut(s) | 10, 134, 144, 250, 1223, 1914, 2417 |
| BmrFI | CCNGG | 7 cut(s) | 132, 138, 1179, 1251, 2229, 2421, 2689 |
| BmrI | ACTGGG | 1 cut(s) | 2246 |
| BmsI | GCATC | 8 cut(s) | 67, 373, 673, 1827, 2042, 2405, 2539, 2787 |
| BmuI | ACTGGG | 1 cut(s) | 2246 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2250 |
| BpiI | GAAGAC | 5 cut(s) | 558, 880, 1239, 1482, 2363 |
| BpmI | CTGGAG | 1 cut(s) | 2661 |
| BpuEI | CTTGAG | 3 cut(s) | 1106, 1205, 2801 |
| BpuMI | CCSGG | 2 cut(s) | 132, 1251 |
| BsaAI | YACGTR | 1 cut(s) | 2273 |
| BsaHI | GRCGYC | 1 cut(s) | 2750 |
| BsaI | GGTCTC | 1 cut(s) | 269 |
| BsaJI | CCNNGG | 8 cut(s) | 137, 650, 828, 942, 1219, 2228, 2419, 2688 |
| BsaWI | WCCGGW | 2 cut(s) | 146, 2347 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 609, 639, 963, 993 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 36, 68, 137, 138, 1178, 1220, 1773, 2538, 2741 |
| Bse1I | ACTGG | 7 cut(s) | 499, 1241, 1270, 1687, 2241, 2344, 2711 |
| Bse3DI | GCAATG | 2 cut(s) | 1347, 2164 |
| BseBI | CCWGG | 5 cut(s) | 138, 1179, 2229, 2421, 2689 |
| BseDI | CCNNGG | 8 cut(s) | 137, 650, 828, 942, 1219, 2228, 2419, 2688 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 36, 68, 137, 138, 1178, 1220, 1773, 2538, 2741 |
| BseMI | GCAATG | 2 cut(s) | 1347, 2164 |
| BseNI | ACTGG | 7 cut(s) | 499, 1241, 1270, 1687, 2241, 2344, 2711 |
| BseRI | GAGGAG | 4 cut(s) | 98, 293, 2015, 2664 |
| BseSI | GKGCMC | 1 cut(s) | 2292 |
| BseXI | GCAGC | 5 cut(s) | 862, 890, 1596, 1922, 2081 |
| BseYI | CCCAGC | 2 cut(s) | 126, 1167 |
| BsgI | GTGCAG | 2 cut(s) | 869, 1921 |
| Bsh1236I | CGCG | 1 cut(s) | 1291 |
| Bsh1285I | CGRYCG | 2 cut(s) | 96, 151 |
| BshFI | GGCC | 6 cut(s) | 11, 658, 1225, 1269, 2132, 2418 |
| BshNI | GGYRCC | 1 cut(s) | 762 |
| BsiEI | CGRYCG | 2 cut(s) | 96, 151 |
| BsiHKAI | GWGCWC | 3 cut(s) | 161, 1092, 2312 |
| BsiHKCI | CYCGRG | 2 cut(s) | 115, 2523 |
| BsiSI | CCGG | 5 cut(s) | 132, 147, 1251, 2348, 2614 |
| BslFI | GGGAC | 7 cut(s) | 263, 612, 758, 1382, 1900, 2135, 2571 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 36, 68, 137, 138, 1178, 1220, 1773, 2538, 2741 |
| BsmAI | GTCTC | 5 cut(s) | 269, 1615, 1836, 2136, 2867 |
| BsmBI | CGTCTC | 2 cut(s) | 1615, 2867 |
| BsmFI | GGGAC | 7 cut(s) | 263, 612, 758, 1382, 1900, 2135, 2571 |
| BsmI | GAATGC | 1 cut(s) | 958 |
| BsnI | GGCC | 6 cut(s) | 11, 658, 1225, 1269, 2132, 2418 |
| Bso31I | GGTCTC | 1 cut(s) | 269 |
| BsoBI | CYCGRG | 2 cut(s) | 115, 2523 |
| Bsp1286I | GDGCHC | 5 cut(s) | 161, 222, 1092, 2292, 2312 |
| Bsp19I | CCATGG | 1 cut(s) | 650 |
| Bsp68I | TCGCGA | 1 cut(s) | 1291 |
| BspANI | GGCC | 6 cut(s) | 11, 658, 1225, 1269, 2132, 2418 |
| BspFNI | CGCG | 1 cut(s) | 1291 |
| BspHI | TCATGA | 1 cut(s) | 1471 |
| BspMAI | CTGCAG | 1 cut(s) | 2071 |
| BspMI | ACCTGC | 1 cut(s) | 2401 |
| BspPI | GGATC | 3 cut(s) | 668, 2009, 2549 |
| BspQI | GCTCTTC | 2 cut(s) | 2000, 2300 |
| BspT107I | GGYRCC | 1 cut(s) | 762 |
| BspTI | CTTAAG | 1 cut(s) | 2536 |
| BspTNI | GGTCTC | 1 cut(s) | 269 |
| BsrBI | CCGCTC | 3 cut(s) | 8, 1891, 2064 |
| BsrDI | GCAATG | 2 cut(s) | 1347, 2164 |
| BsrI | ACTGG | 7 cut(s) | 499, 1241, 1270, 1687, 2241, 2344, 2711 |
| BssECI | CCNNGG | 8 cut(s) | 137, 650, 828, 942, 1219, 2228, 2419, 2688 |
| BssNI | GRCGYC | 1 cut(s) | 2750 |
| BssT1I | CCWWGG | 4 cut(s) | 650, 828, 942, 1219 |
| Bst2UI | CCWGG | 5 cut(s) | 138, 1179, 2229, 2421, 2689 |
| Bst4CI | ACNGT | 4 cut(s) | 1096, 2279, 2585, 2878 |
| Bst6I | CTCTTC | 4 cut(s) | 2000, 2198, 2300, 2366 |
| BstACI | GRCGYC | 1 cut(s) | 2750 |
| BstAFI | CTTAAG | 1 cut(s) | 2536 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 953 |
| BstBAI | YACGTR | 1 cut(s) | 2273 |
| BstC8I | GCNNGC | 5 cut(s) | 660, 855, 1053, 1893, 2334 |
| BstDSI | CCRYGG | 1 cut(s) | 650 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1218, 1771, 2536 |
| BstFNI | CGCG | 1 cut(s) | 1291 |
| BstH2I | RGCGCY | 1 cut(s) | 2598 |
| BstHHI | GCGC | 3 cut(s) | 1719, 2522, 2597 |
| BstMAI | GTCTC | 5 cut(s) | 269, 1615, 1836, 2136, 2867 |
| BstMCI | CGRYCG | 2 cut(s) | 96, 151 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 392, 953, 1450, 2393, 2558 |
| BstNI | CCWGG | 5 cut(s) | 138, 1179, 2229, 2421, 2689 |
| BstNSI | RCATGY | 2 cut(s) | 1055, 2336 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2250 |
| BstSCI | CCNGG | 7 cut(s) | 130, 136, 1177, 1249, 2227, 2419, 2687 |
| BstSFI | CTRYAG | 4 cut(s) | 24, 1965, 2067, 2322 |
| BstSLI | GKGCMC | 1 cut(s) | 2292 |
| BstUI | CGCG | 1 cut(s) | 1291 |
| BstV1I | GCAGC | 5 cut(s) | 862, 890, 1596, 1922, 2081 |
| BstV2I | GAAGAC | 5 cut(s) | 558, 880, 1239, 1482, 2363 |
| BstX2I | RGATCY | 1 cut(s) | 2541 |
| BstYI | RGATCY | 1 cut(s) | 2541 |
| BsuI | GTATCC | 1 cut(s) | 265 |
| BsuRI | GGCC | 6 cut(s) | 11, 658, 1225, 1269, 2132, 2418 |
| BtgI | CCRYGG | 1 cut(s) | 650 |
| BtsI | GCAGTG | 4 cut(s) | 705, 1209, 1468, 1726 |
| BtsIMutI | CAGTG | 9 cut(s) | 576, 705, 1092, 1209, 1468, 1726, 2018, 2234, 2284 |
| BtuMI | TCGCGA | 1 cut(s) | 1291 |
| BveI | ACCTGC | 1 cut(s) | 2401 |
| Cac8I | GCNNGC | 5 cut(s) | 660, 855, 1053, 1893, 2334 |
| CaiI | CAGNNNCTG | 1 cut(s) | 50 |
| CciI | TCATGA | 1 cut(s) | 1471 |
| CfoI | GCGC | 3 cut(s) | 1719, 2522, 2597 |
| Cfr13I | GGNCC | 7 cut(s) | 10, 134, 144, 250, 1223, 1914, 2417 |
| CseI | GACGC | 2 cut(s) | 675, 2739 |
| Csp6I | GTAC | 1 cut(s) | 1795 |
| CviAII | CATG | 9 cut(s) | 473, 586, 602, 651, 1052, 1472, 1648, 1825, 2333 |
| CviQI | GTAC | 1 cut(s) | 1795 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2703 |
| EaeI | YGGCCR | 2 cut(s) | 1267, 2130 |
| Eam1104I | CTCTTC | 4 cut(s) | 2000, 2198, 2300, 2366 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2703 |
| EarI | CTCTTC | 4 cut(s) | 2000, 2198, 2300, 2366 |
| EciI | GGCGGA | 2 cut(s) | 135, 2380 |
| Ecl136II | GAGCTC | 3 cut(s) | 159, 1090, 2310 |
| Eco130I | CCWWGG | 4 cut(s) | 650, 828, 942, 1219 |
| Eco24I | GRGCYC | 4 cut(s) | 161, 222, 1092, 2312 |
| Eco31I | GGTCTC | 1 cut(s) | 269 |
| Eco32I | GATATC | 1 cut(s) | 2052 |
| Eco47I | GGWCC | 4 cut(s) | 134, 144, 250, 1914 |
| Eco53kI | GAGCTC | 3 cut(s) | 159, 1090, 2310 |
| Eco57I | CTGAAG | 2 cut(s) | 1005, 1881 |
| Eco88I | CYCGRG | 2 cut(s) | 115, 2523 |
| EcoICRI | GAGCTC | 3 cut(s) | 159, 1090, 2310 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1218, 1771, 2536 |
| EcoO109I | RGGNCCY | 2 cut(s) | 250, 1914 |
| EcoRII | CCWGG | 5 cut(s) | 136, 1177, 2227, 2419, 2687 |
| EcoRV | GATATC | 1 cut(s) | 2052 |
| EcoT14I | CCWWGG | 4 cut(s) | 650, 828, 942, 1219 |
| EcoT22I | ATGCAT | 1 cut(s) | 2035 |
| EcoT38I | GRGCYC | 4 cut(s) | 161, 222, 1092, 2312 |
| ErhI | CCWWGG | 4 cut(s) | 650, 828, 942, 1219 |
| Esp3I | CGTCTC | 2 cut(s) | 1615, 2867 |
| FaeI | CATG | 9 cut(s) | 476, 589, 605, 654, 1055, 1475, 1651, 1828, 2336 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1224, 1256, 2433, 2465 |
| FaqI | GGGAC | 7 cut(s) | 263, 612, 758, 1382, 1900, 2135, 2571 |
| FatI | CATG | 9 cut(s) | 472, 585, 601, 650, 1051, 1471, 1647, 1824, 2332 |
| FauI | CCCGC | 2 cut(s) | 1394, 1884 |
| FauNDI | CATATG | 1 cut(s) | 1923 |
| FbaI | TGATCA | 1 cut(s) | 1276 |
| Fnu4HI | GCNGC | 6 cut(s) | 9, 851, 904, 1585, 1936, 2070 |
| FriOI | GRGCYC | 4 cut(s) | 161, 222, 1092, 2312 |
| Fsp4HI | GCNGC | 6 cut(s) | 9, 851, 904, 1585, 1936, 2070 |
| FspBI | CTAG | 3 cut(s) | 402, 2040, 2045 |
| FspI | TGCGCA | 1 cut(s) | 1718 |
| GlaI | GCGC | 3 cut(s) | 1718, 2521, 2596 |
| GluI | GCNGC | 6 cut(s) | 9, 851, 904, 1585, 1936, 2070 |
| GsaI | CCCAGC | 2 cut(s) | 130, 1171 |
| GsuI | CTGGAG | 1 cut(s) | 2661 |
| HaeII | RGCGCY | 1 cut(s) | 2598 |
| HaeIII | GGCC | 6 cut(s) | 11, 658, 1225, 1269, 2132, 2418 |
| HapII | CCGG | 5 cut(s) | 132, 147, 1251, 2348, 2614 |
| HgaI | GACGC | 2 cut(s) | 675, 2739 |
| HhaI | GCGC | 3 cut(s) | 1719, 2522, 2597 |
| Hin1I | GRCGYC | 1 cut(s) | 2750 |
| Hin1II | CATG | 9 cut(s) | 476, 589, 605, 654, 1055, 1475, 1651, 1828, 2336 |
| Hin6I | GCGC | 3 cut(s) | 1717, 2520, 2595 |
| HinP1I | GCGC | 3 cut(s) | 1717, 2520, 2595 |
| HincII | GTYRAC | 3 cut(s) | 938, 2608, 2790 |
| HindII | GTYRAC | 3 cut(s) | 938, 2608, 2790 |
| HindIII | AAGCTT | 1 cut(s) | 2385 |
| HpaII | CCGG | 5 cut(s) | 132, 147, 1251, 2348, 2614 |
| Hpy166II | GTNNAC | 7 cut(s) | 409, 938, 1298, 1730, 2608, 2651, 2790 |
| Hpy8I | GTNNAC | 7 cut(s) | 409, 938, 1298, 1730, 2608, 2651, 2790 |
| Hpy99I | CGWCG | 2 cut(s) | 101, 775 |
| HpyCH4III | ACNGT | 4 cut(s) | 1096, 2279, 2585, 2878 |
| HpyCH4IV | ACGT | 1 cut(s) | 2272 |
| HpyCH4V | TGCA | 9 cut(s) | 80, 698, 850, 1118, 1259, 1938, 2033, 2069, 2396 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 392, 953, 1450, 2393, 2558 |
| HpySE526I | ACGT | 1 cut(s) | 2272 |
| Hsp92I | GRCGYC | 1 cut(s) | 2750 |
| Hsp92II | CATG | 9 cut(s) | 476, 589, 605, 654, 1055, 1475, 1651, 1828, 2336 |
| HspAI | GCGC | 3 cut(s) | 1717, 2520, 2595 |
| KflI | GGGWCCC | 1 cut(s) | 1914 |
| Ksp22I | TGATCA | 1 cut(s) | 1276 |
| LguI | GCTCTTC | 2 cut(s) | 2000, 2300 |
| LmnI | GCTCC | 5 cut(s) | 5, 1421, 1888, 2168, 2622 |
| Lsp1109I | GCAGC | 5 cut(s) | 862, 890, 1596, 1922, 2081 |
| LweI | GCATC | 8 cut(s) | 67, 373, 673, 1827, 2042, 2405, 2539, 2787 |
| MaeI | CTAG | 3 cut(s) | 402, 2040, 2045 |
| MaeII | ACGT | 1 cut(s) | 2272 |
| MbiI | CCGCTC | 3 cut(s) | 8, 1891, 2064 |
| MfeI | CAATTG | 1 cut(s) | 1145 |
| MflI | RGATCY | 1 cut(s) | 2541 |
| MhlI | GDGCHC | 5 cut(s) | 161, 222, 1092, 2292, 2312 |
| MlsI | TGGCCA | 2 cut(s) | 1269, 2132 |
| MluNI | TGGCCA | 2 cut(s) | 1269, 2132 |
| MlyI | GAGTC | 7 cut(s) | 199, 305, 356, 717, 1477, 1512, 2138 |
| MmeI | TCCRAC | 3 cut(s) | 324, 2190, 2826 |
| Mox20I | TGGCCA | 2 cut(s) | 1269, 2132 |
| Mph1103I | ATGCAT | 1 cut(s) | 2035 |
| MroXI | GAANNNNTTC | 1 cut(s) | 798 |
| MscI | TGGCCA | 2 cut(s) | 1269, 2132 |
| Msp20I | TGGCCA | 2 cut(s) | 1269, 2132 |
| MspA1I | CMGCKG | 1 cut(s) | 2828 |
| MspCI | CTTAAG | 1 cut(s) | 2536 |
| MspI | CCGG | 5 cut(s) | 132, 147, 1251, 2348, 2614 |
| MspR9I | CCNGG | 7 cut(s) | 132, 138, 1179, 1251, 2229, 2421, 2689 |
| MunI | CAATTG | 1 cut(s) | 1145 |
| Mva1269I | GAATGC | 1 cut(s) | 958 |
| MvaI | CCWGG | 5 cut(s) | 138, 1179, 2229, 2421, 2689 |
| MvnI | CGCG | 1 cut(s) | 1291 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 392, 953, 1450, 2393, 2558 |
| NciI | CCSGG | 2 cut(s) | 132, 1251 |
| NcoI | CCATGG | 1 cut(s) | 650 |
| NdeI | CATATG | 1 cut(s) | 1923 |
| NlaIII | CATG | 9 cut(s) | 476, 589, 605, 654, 1055, 1475, 1651, 1828, 2336 |
| NmuCI | GTSAC | 8 cut(s) | 376, 590, 1527, 1685, 2232, 2273, 2407, 2751 |
| NruI | TCGCGA | 1 cut(s) | 1291 |
| NsbI | TGCGCA | 1 cut(s) | 1718 |
| NsiI | ATGCAT | 1 cut(s) | 2035 |
| NspI | RCATGY | 2 cut(s) | 1055, 2336 |
| PaeI | GCATGC | 2 cut(s) | 1055, 2336 |
| PagI | TCATGA | 1 cut(s) | 1471 |
| PaqCI | CACCTGC | 1 cut(s) | 2401 |
| PciSI | GCTCTTC | 2 cut(s) | 2000, 2300 |
| PctI | GAATGC | 1 cut(s) | 958 |
| PdmI | GAANNNNTTC | 1 cut(s) | 798 |
| PfeI | GAWTC | 4 cut(s) | 1022, 1856, 2282, 2894 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1178 |
| PfoI | TCCNGGA | 1 cut(s) | 1249 |
| PkrI | GCNGC | 6 cut(s) | 10, 852, 905, 1586, 1937, 2071 |
| Ple19I | CGATCG | 1 cut(s) | 96 |
| PleI | GAGTC | 7 cut(s) | 199, 304, 355, 717, 1476, 1512, 2138 |
| PpsI | GAGTC | 7 cut(s) | 199, 304, 355, 717, 1476, 1512, 2138 |
| Ppu21I | YACGTR | 1 cut(s) | 2273 |
| PpuMI | RGGWCCY | 2 cut(s) | 250, 1914 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2250 |
| Psp124BI | GAGCTC | 3 cut(s) | 161, 1092, 2312 |
| Psp5II | RGGWCCY | 2 cut(s) | 250, 1914 |
| Psp6I | CCWGG | 5 cut(s) | 136, 1177, 2227, 2419, 2687 |
| PspFI | CCCAGC | 2 cut(s) | 126, 1167 |
| PspGI | CCWGG | 5 cut(s) | 136, 1177, 2227, 2419, 2687 |
| PspPI | GGNCC | 7 cut(s) | 10, 134, 144, 250, 1223, 1914, 2417 |
| PspPPI | RGGWCCY | 2 cut(s) | 250, 1914 |
| PstI | CTGCAG | 1 cut(s) | 2071 |
| PstNI | CAGNNNCTG | 1 cut(s) | 50 |
| PsuI | RGATCY | 1 cut(s) | 2541 |
| PvuI | CGATCG | 1 cut(s) | 96 |
| PvuII | CAGCTG | 1 cut(s) | 2828 |
| RruI | TCGCGA | 1 cut(s) | 1291 |
| RsaI | GTAC | 1 cut(s) | 1796 |
| RsaNI | GTAC | 1 cut(s) | 1795 |
| SacI | GAGCTC | 3 cut(s) | 161, 1092, 2312 |
| SapI | GCTCTTC | 2 cut(s) | 2000, 2300 |
| SatI | GCNGC | 6 cut(s) | 9, 851, 904, 1585, 1936, 2070 |
| Sau96I | GGNCC | 7 cut(s) | 10, 134, 144, 250, 1223, 1914, 2417 |
| ScaI | AGTACT | 1 cut(s) | 1796 |
| SchI | GAGTC | 7 cut(s) | 199, 305, 356, 717, 1477, 1512, 2138 |
| ScrFI | CCNGG | 7 cut(s) | 132, 138, 1179, 1251, 2229, 2421, 2689 |
| SduI | GDGCHC | 5 cut(s) | 161, 222, 1092, 2292, 2312 |
| SfaNI | GCATC | 8 cut(s) | 67, 373, 673, 1827, 2042, 2405, 2539, 2787 |
| SfcI | CTRYAG | 4 cut(s) | 24, 1965, 2067, 2322 |
| SinI | GGWCC | 4 cut(s) | 134, 144, 250, 1914 |
| SmlI | CTYRAG | 4 cut(s) | 1085, 1184, 2536, 2780 |
| SmoI | CTYRAG | 4 cut(s) | 1085, 1184, 2536, 2780 |
| SphI | GCATGC | 2 cut(s) | 1055, 2336 |
| SspMI | CTAG | 3 cut(s) | 402, 2040, 2045 |
| SstI | GAGCTC | 3 cut(s) | 161, 1092, 2312 |
| StyD4I | CCNGG | 7 cut(s) | 130, 136, 1177, 1249, 2227, 2419, 2687 |
| StyI | CCWWGG | 4 cut(s) | 650, 828, 942, 1219 |
| TaaI | ACNGT | 4 cut(s) | 1096, 2279, 2585, 2878 |
| TaiI | ACGT | 1 cut(s) | 2275 |
| TatI | WGTACW | 1 cut(s) | 1794 |
| TauI | GCSGC | 1 cut(s) | 11 |
| TfiI | GAWTC | 4 cut(s) | 1022, 1856, 2282, 2894 |
| TscAI | CASTG | 9 cut(s) | 583, 705, 1099, 1209, 1468, 1726, 2025, 2241, 2284 |
| TseFI | GTSAC | 8 cut(s) | 376, 590, 1527, 1685, 2232, 2273, 2407, 2751 |
| TseI | GCWGC | 5 cut(s) | 850, 903, 1584, 1935, 2069 |
| Tsp45I | GTSAC | 8 cut(s) | 376, 590, 1527, 1685, 2232, 2273, 2407, 2751 |
| TspDTI | ATGAA | 8 cut(s) | 459, 1176, 1685, 1757, 1887, 2499, 2755, 2889 |
| TspGWI | ACGGA | 6 cut(s) | 395, 426, 759, 1060, 1639, 1955 |
| TspRI | CASTG | 9 cut(s) | 583, 705, 1099, 1209, 1468, 1726, 2025, 2241, 2284 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1178 |
| Vha464I | CTTAAG | 1 cut(s) | 2536 |
| VpaK11BI | GGWCC | 4 cut(s) | 134, 144, 250, 1914 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1218, 1771, 2536 |
| XapI | RAATTY | 6 cut(s) | 446, 796, 1305, 1554, 2212, 2468 |
| XceI | RCATGY | 2 cut(s) | 1055, 2336 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1175, 1233 |
| XmnI | GAANNNNTTC | 1 cut(s) | 798 |
| XspI | CTAG | 3 cut(s) | 402, 2040, 2045 |
| ZrmI | AGTACT | 1 cut(s) | 1796 |
| Zsp2I | ATGCAT | 1 cut(s) | 2035 |