Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002210

Physical Location & Seq

Genomic Coordinates Forward (+)

49340513 .. 49341158

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00367520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCCCCACTCCATCGATTAACACCACCAGCAAGTTCTTTCCTCCTCCTCCTCCACCACCACTACCGACATAGAAGGACAATGAGGAAGAACCGGTCAAGAACAATGAACGGAAAAAGAAATCGGACCTACCCAAAGTCAATTCAACACAATGCCCAAGAAATCGGACCAAATGAAGTTGGAGGAGAGAGGGATGGATCCGGTGGGGAGCCGGTGAGGTCGTCCGTTGAGTTGGTCAAGACCGTGGAGGCCAAAGTTTCAATTGTTTACACAATCGCACCACCTCAAATGGCATTTAGAGGGCGTGGATGTGGACGAGGTGGTTTTGGAAGCTATCGCGGTATTAAAGAAGAACACTTTGTGTTGTTCCTTGATATTAACATACTTGATGCCACGTATATTTTGTCCACCTCCGATCGAAGAAAAACAAGGAAGATATGTTGTTGGATCAAACAAAGTTTGGAGTGGCTGAACAAAACAGGCATTATCTTTAACGTAAAGAAGCAAGAGAACGACCGGGATCGGATTGAGAAGATATTAGAACCGGACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

21.18

Weight (kDa)

10.13

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27860 AT3G27860 AT5G40340 AT5G40340
fragaria_vesca	FvH4_6g50890 FvH4_6g50890
malus_domestica	MD09G1031100.v1.1
prunus_persica	Prupe.3G286500_v2.0.a1
pyrus_communis	pycom111g02480 pycom17g03040
rosa_chinensis	RchiOBHm_Chr2g0172271
rosa_laevigata	RLG00000006622 RLG00000018603 RLG00000022100 RLG00000024336 RLG00000028434 RLG00000037070
rosa_multiflora	Rmu_sc0005277.1_g000016 Rmu_sc0017785.1_g000001 Rmu_sc0017786.1_g000001 Rmu_ssc0000103.1_g000005
rosa_roxburghii	Rroxscaffold_4G00328330 Rroxscaffold_5G00367520
rosa_rugosa	Rorug02G0558300
rosa_samantha	Rh2AG320200 Rh2AG320300 Rh2AG475500 Rh2AG535600 Rh2AG535700 Rh2AG633300 Rh2BG646900 Rh2CG519400 Rh2CG613900 Rh2DG573700 Rh2DG573800 Rh2DG661800 Rh4BG393600 Rh4CG408400 Rh5AG278200 Rh5BG282800 Rh6AG204800 Rh6AG204900
rosa_wichuraiana	Rw2G052440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	339
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	4 cut(s)	192, 205, 455, 528
AdeI	CACNNNGTG	1 cut(s)	361
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	146, 261
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
AlwI	GGATC	4 cut(s)	192, 205, 455, 528
AoxI	GGCC	1 cut(s)	249
AsiGI	ACCGGT	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	126, 167
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	2 cut(s)	126, 167
BamHI	GGATCC	1 cut(s)	197
BccI	CCATC	2 cut(s)	21, 188
BcnI	CCSGG	1 cut(s)	518
Bme1390I	CCNGG	1 cut(s)	518
Bme18I	GGWCC	2 cut(s)	126, 167
BmgT120I	GGNCC	2 cut(s)	126, 167
BmiI	GGNNCC	2 cut(s)	199, 210
BmrFI	CCNGG	1 cut(s)	518
BmsI	GCATC	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	518
Bsa29I	ATCGAT	1 cut(s)	16
BsaAI	YACGTR	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	243
BsaWI	WCCGGW	3 cut(s)	93, 200, 544
Bse118I	RCCGGY	2 cut(s)	93, 211
BseCI	ATCGAT	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	2 cut(s)	199, 314
BseRI	GAGGAG	4 cut(s)	35, 38, 41, 198
Bsh1236I	CGCG	1 cut(s)	339
Bsh1285I	CGRYCG	2 cut(s)	418, 517
BshFI	GGCC	1 cut(s)	251
BshTI	ACCGGT	1 cut(s)	93
BshVI	ATCGAT	1 cut(s)	16
BsiEI	CGRYCG	2 cut(s)	418, 517
BsiSI	CCGG	5 cut(s)	94, 201, 212, 517, 545
BsnI	GGCC	1 cut(s)	251
Bsp143I	GATC	4 cut(s)	197, 415, 447, 520
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	251
BspDI	ATCGAT	1 cut(s)	16
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	199, 210
BspPI	GGATC	4 cut(s)	192, 205, 455, 528
BsrFI	RCCGGY	2 cut(s)	93, 211
BssAI	RCCGGY	2 cut(s)	93, 211
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	4 cut(s)	197, 415, 447, 520
Bst4CI	ACNGT	1 cut(s)	244
BstBAI	YACGTR	1 cut(s)	396
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	199, 314
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	4 cut(s)	200, 418, 450, 523
BstMBI	GATC	4 cut(s)	197, 415, 447, 520
BstMCI	CGRYCG	2 cut(s)	418, 517
BstSCI	CCNGG	1 cut(s)	516
BstUI	CGCG	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
Bsu15I	ATCGAT	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	251
BsuTUI	ATCGAT	1 cut(s)	16
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	199, 314
Cfr10I	RCCGGY	2 cut(s)	93, 211
Cfr13I	GGNCC	2 cut(s)	126, 167
ClaI	ATCGAT	1 cut(s)	16
CspAI	ACCGGT	1 cut(s)	93
CviJI	RGCY	4 cut(s)	211, 251, 333, 469
CviKI_1	RGCY	4 cut(s)	211, 251, 333, 469
DpnI	GATC	4 cut(s)	199, 417, 449, 522
DpnII	GATC	4 cut(s)	197, 415, 447, 520
DraIII	CACNNNGTG	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	126, 167
FaiI	YATR	4 cut(s)	72, 383, 399, 439
FokI	GGATG	2 cut(s)	206, 321
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	5 cut(s)	94, 201, 212, 517, 545
HpaII	CCGG	5 cut(s)	94, 201, 212, 517, 545
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	3 cut(s)	268, 314, 408
Hpy188I	TCNGA	4 cut(s)	126, 167, 415, 525
Hpy188III	TCNNGA	2 cut(s)	99, 238
Hpy8I	GTNNAC	3 cut(s)	268, 314, 408
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	395, 495
HpySE526I	ACGT	2 cut(s)	395, 495
Kzo9I	GATC	4 cut(s)	197, 415, 447, 520
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	6 cut(s)	42, 107, 214, 225, 465, 530
LweI	GCATC	1 cut(s)	379
MaeII	ACGT	2 cut(s)	395, 495
MalI	GATC	4 cut(s)	199, 417, 449, 522
MboI	GATC	4 cut(s)	197, 415, 447, 520
MboII	GAAGA	5 cut(s)	100, 362, 432, 445, 544
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	197
MluCI	AATT	2 cut(s)	141, 261
MmeI	TCCRAC	2 cut(s)	160, 425
MseI	TTAA	4 cut(s)	20, 345, 378, 492
MspI	CCGG	5 cut(s)	94, 201, 212, 517, 545
MspR9I	CCNGG	1 cut(s)	518
MunI	CAATTG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	339
NciI	CCSGG	1 cut(s)	518
NdeII	GATC	4 cut(s)	197, 415, 447, 520
NlaIV	GGNNCC	2 cut(s)	199, 210
PinAI	ACCGGT	1 cut(s)	93
Ple19I	CGATCG	1 cut(s)	418
Ppu21I	YACGTR	1 cut(s)	396
PspN4I	GGNNCC	2 cut(s)	199, 210
PspPI	GGNCC	2 cut(s)	126, 167
PsuI	RGATCY	1 cut(s)	197
PvuI	CGATCG	1 cut(s)	418
SaqAI	TTAA	4 cut(s)	20, 345, 378, 492
Sau3AI	GATC	4 cut(s)	197, 415, 447, 520
Sau96I	GGNCC	2 cut(s)	126, 167
ScrFI	CCNGG	1 cut(s)	518
SetI	ASST	8 cut(s)	131, 221, 286, 322, 335, 398, 413, 498
SfaNI	GCATC	1 cut(s)	379
SinI	GGWCC	2 cut(s)	126, 167
Sse9I	AATT	2 cut(s)	141, 261
SsiI	CCGC	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	516
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	2 cut(s)	398, 498
TaqI	TCGA	2 cut(s)	16, 418
TasI	AATT	2 cut(s)	141, 261
Tru1I	TTAA	4 cut(s)	20, 345, 378, 492
Tru9I	TTAA	4 cut(s)	20, 345, 378, 492
TspDTI	ATGAA	2 cut(s)	122, 189
TspGWI	ACGGA	2 cut(s)	126, 214
VpaK11BI	GGWCC	2 cut(s)	126, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.