Rmu_sc0017785.1_g000001

PWWP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017785.1
OG0002210
Physical Location & Seq
Forward (+)
1 .. 3499
3499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017785.1_g000001.1.cds

Sequence Viewer

Length: 438 bp
ctaaactggtggctggttttgagtggcgggtttggaataaaggaaaagtggaatgatgcgacgccgttttggtgcgggaaaacaggtggcggattaccggtgactgtggtttgcttttgggatgaggagaatggcaattgttgtgatgaaaacaagaccaacggtggtgggaacgacagggttgaggagaatgggaagtcattggatgaaattgggggagagatagatcgggaaactgaggtgtttgaggttcccattgcaggtacgaatgaaaatggtcaagaccgggtgggagaagagttggatgatggagtatgtgagttttatattggagattttgtgtggggtaagattaagaaccacctgtggtggtcgggccagttttgtgatctttcagatgcttctgagcttgcagcgaaattgagattgagaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

145

Amino Acids

16.14

Weight (kDa)

4.29

Isoelectric Point (pI)

26.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 251
AciI CCGC 3 cut(s) 27, 75, 90
AcsI RAATTY 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 260
AgeI ACCGGT 1 cut(s) 97
AluBI AGCT 1 cut(s) 409
AluI AGCT 1 cut(s) 409
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 1 cut(s) 413
ApoI RAATTY 1 cut(s) 432
AsiGI ACCGGT 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 376
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 112
BbvI GCAGC 1 cut(s) 425
BccI CCATC 1 cut(s) 302
BceAI ACGGC 1 cut(s) 49
BcnI CCSGG 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 251
BisI GCNGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 415
Bme1390I CCNGG 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 2 cut(s) 46, 388
BpuMI CCSGG 1 cut(s) 287
BsaHI GRCGYC 1 cut(s) 62
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 2 cut(s) 11, 379
Bse3DI GCAATG 1 cut(s) 255
BseGI GGATG 3 cut(s) 127, 211, 310
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 228, 396
BseNI ACTGG 2 cut(s) 11, 379
BseRI GAGGAG 2 cut(s) 140, 200
BseXI GCAGC 1 cut(s) 425
BshFI GGCC 1 cut(s) 378
BshTI ACCGGT 1 cut(s) 97
BsiSI CCGG 2 cut(s) 98, 286
BslI CCNNNNNNNGG 1 cut(s) 260
BsnI GGCC 1 cut(s) 378
Bsp143I GATC 2 cut(s) 226, 388
BspACI CCGC 3 cut(s) 27, 75, 90
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 2 cut(s) 229, 397
BspLI GGNNCC 1 cut(s) 252
BspMI ACCTGC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 2 cut(s) 11, 379
BssAI RCCGGY 1 cut(s) 97
BssMI GATC 2 cut(s) 226, 388
BssNI GRCGYC 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 106, 164
Bst6I CTCTTC 1 cut(s) 291
BstACI GRCGYC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 2 cut(s) 237, 405
BstF5I GGATG 3 cut(s) 127, 211, 310
BstKTI GATC 2 cut(s) 229, 391
BstMBI GATC 2 cut(s) 226, 388
BstSCI CCNGG 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 425
BsuRI GGCC 1 cut(s) 378
BtsCI GGATG 3 cut(s) 127, 211, 310
BveI ACCTGC 1 cut(s) 251
Cac8I GCNNGC 1 cut(s) 411
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 376
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 264
CspAI ACCGGT 1 cut(s) 97
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviJI RGCY 3 cut(s) 13, 378, 409
CviKI_1 RGCY 3 cut(s) 13, 378, 409
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 2 cut(s) 237, 405
DpnI GATC 2 cut(s) 228, 390
DpnII GATC 2 cut(s) 226, 388
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
EciI GGCGGA 1 cut(s) 105
FaiI YATR 2 cut(s) 316, 327
FauI CCCGC 2 cut(s) 20, 68
Fnu4HI GCNGC 1 cut(s) 414
FokI GGATG 3 cut(s) 134, 218, 317
Fsp4HI GCNGC 1 cut(s) 414
GluI GCNGC 1 cut(s) 414
HaeIII GGCC 1 cut(s) 378
HapII CCGG 2 cut(s) 98, 286
HgaI GACGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 62
HpaII CCGG 2 cut(s) 98, 286
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 397, 406
Hpy188III TCNNGA 2 cut(s) 230, 281
Hpy99I CGWCG 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 106, 164
HpyCH4V TGCA 2 cut(s) 260, 413
HpyF3I CTNAG 2 cut(s) 237, 405
Hsp92I GRCGYC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 226, 388
LpnPI CCDG 7 cut(s) 69, 111, 163, 246, 299, 377, 392
Lsp1109I GCAGC 1 cut(s) 425
LweI GCATC 2 cut(s) 46, 388
MaeIII GTNAC 1 cut(s) 100
MalI GATC 2 cut(s) 228, 390
MboI GATC 2 cut(s) 226, 388
MboII GAAGA 1 cut(s) 308
MfeI CAATTG 1 cut(s) 136
MluCI AATT 4 cut(s) 136, 210, 419, 432
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 4 cut(s) 118, 178, 232, 241
MseI TTAA 1 cut(s) 354
MspI CCGG 2 cut(s) 98, 286
MspR9I CCNGG 1 cut(s) 287
MunI CAATTG 1 cut(s) 136
NciI CCSGG 1 cut(s) 287
NdeII GATC 2 cut(s) 226, 388
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 100
PinAI ACCGGT 1 cut(s) 97
PkrI GCNGC 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 376
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 1 cut(s) 414
Sau3AI GATC 2 cut(s) 226, 388
Sau96I GGNCC 1 cut(s) 376
ScrFI CCNGG 1 cut(s) 287
SetI ASST 6 cut(s) 88, 243, 252, 265, 366, 411
SfaNI GCATC 2 cut(s) 46, 388
Sse9I AATT 4 cut(s) 136, 210, 419, 432
SsiI CCGC 3 cut(s) 27, 75, 90
StyD4I CCNGG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 106, 164
TasI AATT 4 cut(s) 136, 210, 419, 432
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 3 cut(s) 162, 222, 285
XapI RAATTY 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.