Rroxscaffold_4G00328330

PWWP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002210
Physical Location & Seq
Reverse (-)
61285648 .. 61287083
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00328330.1

Sequence Viewer

Length: 366 bp
ATGCCCAAGAAATCGGACCGGATGAAGGTGGAGGAGAGAGGGATGGGTCCGGTGGGGAGCTGGGATGAGGAGAATGGCAATTGTTGTGATGAAAACAAGACCAACAGTGGTGGGAACGACGGGGTTGAGGAGAATGGGAAGTCATTGGATGAAATTGGGGGAGAGATAGATGGGGAAACTGAGCTGTTTGAGGTTCCTATTGCTGGTACGAATGAAAATGGTCAAGACCGGGTGGGAGAAGAGTTGGATGGCAGAGTATGTGAATTTCGTATTGGAGATTTTGTGTGGGGTAAGATTAAGAACAACCGGTGGTGGTCGGGCCGGATTTGTGATCCTTCGGATGCTTCGAGCTTGCGGCGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

121

Amino Acids

13.41

Weight (kDa)

4.47

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 355
AclWI GGATC 1 cut(s) 326
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 25, 203
AgeI ACCGGT 1 cut(s) 306
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AluBI AGCT 3 cut(s) 60, 184, 351
AluI AGCT 3 cut(s) 60, 184, 351
AlwI GGATC 1 cut(s) 326
AoxI GGCC 1 cut(s) 319
ApoI RAATTY 1 cut(s) 263
AsiGI ACCGGT 1 cut(s) 306
AspS9I GGNCC 3 cut(s) 16, 47, 319
AsuC2I CCSGG 1 cut(s) 230
AvaII GGWCC 2 cut(s) 16, 47
BccI CCATC 3 cut(s) 37, 164, 242
BcnI CCSGG 1 cut(s) 230
BisI GCNGC 1 cut(s) 356
BlsI GCNGC 1 cut(s) 357
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 2 cut(s) 16, 47
BmgT120I GGNCC 3 cut(s) 16, 47, 319
BmiI GGNNCC 2 cut(s) 48, 195
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 331
BpuMI CCSGG 1 cut(s) 230
BsaWI WCCGGW 3 cut(s) 18, 49, 306
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 203
Bse118I RCCGGY 1 cut(s) 306
BseGI GGATG 6 cut(s) 27, 48, 70, 154, 253, 346
BseLI CCNNNNNNNGG 2 cut(s) 25, 203
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 3 cut(s) 47, 83, 143
BseYI CCCAGC 1 cut(s) 60
BshFI GGCC 1 cut(s) 321
BshTI ACCGGT 1 cut(s) 306
BsiSI CCGG 5 cut(s) 19, 50, 229, 307, 322
BslI CCNNNNNNNGG 2 cut(s) 25, 203
BsnI GGCC 1 cut(s) 321
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 1 cut(s) 355
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 48, 195
BspPI GGATC 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 306
BssAI RCCGGY 1 cut(s) 306
BssMI GATC 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 353
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 6 cut(s) 27, 48, 70, 154, 253, 346
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 228
BsuRI GGCC 1 cut(s) 321
BtsCI GGATG 6 cut(s) 27, 48, 70, 154, 253, 346
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 353
Cfr10I RCCGGY 1 cut(s) 306
Cfr13I GGNCC 3 cut(s) 16, 47, 319
CpoI CGGWCCG 1 cut(s) 16
Csp6I GTAC 1 cut(s) 207
CspAI ACCGGT 1 cut(s) 306
CspCI CAANNNNNGTGG 2 cut(s) 91, 126
CspI CGGWCCG 1 cut(s) 16
CviJI RGCY 4 cut(s) 60, 184, 321, 351
CviKI_1 RGCY 4 cut(s) 60, 184, 321, 351
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco47I GGWCC 2 cut(s) 16, 47
FaiI YATR 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 356
FokI GGATG 6 cut(s) 34, 55, 77, 161, 260, 353
Fsp4HI GCNGC 1 cut(s) 356
GluI GCNGC 1 cut(s) 356
GsaI CCCAGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 321
HapII CCGG 5 cut(s) 19, 50, 229, 307, 322
HpaII CCGG 5 cut(s) 19, 50, 229, 307, 322
Hpy188I TCNGA 2 cut(s) 16, 340
Hpy188III TCNNGA 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 19, 345
HpyCH4III ACNGT 1 cut(s) 107
HpyF3I CTNAG 1 cut(s) 180
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 7 cut(s) 32, 46, 63, 189, 242, 320, 335
LweI GCATC 1 cut(s) 331
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 1 cut(s) 251
MfeI CAATTG 1 cut(s) 79
MluCI AATT 4 cut(s) 79, 153, 263, 361
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 5 cut(s) 25, 32, 61, 121, 184
MseI TTAA 1 cut(s) 297
MspI CCGG 5 cut(s) 19, 50, 229, 307, 322
MspR9I CCNGG 1 cut(s) 230
MunI CAATTG 1 cut(s) 79
NciI CCSGG 1 cut(s) 230
NdeII GATC 1 cut(s) 331
NlaIV GGNNCC 2 cut(s) 48, 195
PcsI WCGNNNNNNNCGW 1 cut(s) 344
PinAI ACCGGT 1 cut(s) 306
PkrI GCNGC 1 cut(s) 357
PspFI CCCAGC 1 cut(s) 60
PspN4I GGNNCC 2 cut(s) 48, 195
PspPI GGNCC 3 cut(s) 16, 47, 319
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
Rsr2I CGGWCCG 1 cut(s) 16
RsrII CGGWCCG 1 cut(s) 16
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 1 cut(s) 356
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 3 cut(s) 16, 47, 319
ScrFI CCNGG 1 cut(s) 230
SetI ASST 5 cut(s) 30, 62, 186, 195, 353
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 2 cut(s) 16, 47
Sse9I AATT 4 cut(s) 79, 153, 263, 361
SsiI CCGC 1 cut(s) 355
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 347
TasI AATT 4 cut(s) 79, 153, 263, 361
TauI GCSGC 1 cut(s) 358
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 112
TspDTI ATGAA 4 cut(s) 38, 105, 165, 228
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 16, 47
XapI RAATTY 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.