Rh2AG475500

PWWP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002210
Physical Location & Seq
Forward (+)
69428755 .. 69429156
402 bp
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UTR
Exon/CDS
Intron
Rh2AG475500.1

Sequence Viewer

Length: 402 bp
ATGAGTGAGTCTTGGAGAGGGGAGTCTGGTTTAGGTGATGAGAGGAGAATGGTGATCATTGGTTCGAAGATGAATTCAGATGCGAATGTAGGAGATGAGGAGAATGGCAATTGTTGTGATGAAAACAAGACCAGCGGTGGTGGGAACGACGGGGTTGAGGAGAATGAAAAGTCATTTGATGAAATTGGGGGAGAGATAGATGGGGAAACTGAGGTGTTTGAGGTTCCCATTGCAGGTACGAGTGAAAATGCACAAGACCGGGTCCGGGTGGGAGAAGAGTTGGATGACGGAGTATGTGAGTTATGTATCGGAGATTTTGTGTGGGTAAGATTAAGAACCACCCGTGGTGGTCGGGCCAGATTTGTGATCCTTCAGATGCTTTTGAGCTTGCAGAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

133

Amino Acids

14.56

Weight (kDa)

4.28

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 224
AciI CCGC 1 cut(s) 135
AclWI GGATC 1 cut(s) 361
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 356
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 2 cut(s) 233, 265
AluBI AGCT 1 cut(s) 387
AluI AGCT 1 cut(s) 387
AlwI GGATC 1 cut(s) 361
AoxI GGCC 1 cut(s) 354
ApoI RAATTY 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 262, 354
AsuC2I CCSGG 2 cut(s) 260, 266
AsuHPI GGTGA 2 cut(s) 47, 64
AsuII TTCGAA 1 cut(s) 65
AvaII GGWCC 1 cut(s) 262
BccI CCATC 1 cut(s) 194
BclI TGATCA 1 cut(s) 54
BcnI CCSGG 2 cut(s) 260, 266
BfuAI ACCTGC 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 260, 266
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 2 cut(s) 262, 354
BmiI GGNNCC 2 cut(s) 225, 263
BmrFI CCNGG 2 cut(s) 260, 266
BmsI GCATC 2 cut(s) 70, 366
Bpu14I TTCGAA 1 cut(s) 65
BpuMI CCSGG 2 cut(s) 260, 266
BsaJI CCNNGG 1 cut(s) 343
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 265
Bse3DI GCAATG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 233, 265
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 201
BseRI GAGGAG 3 cut(s) 58, 113, 173
BshFI GGCC 1 cut(s) 356
BsiSI CCGG 2 cut(s) 259, 265
BslI CCNNNNNNNGG 2 cut(s) 233, 265
BsnI GGCC 1 cut(s) 356
Bsp119I TTCGAA 1 cut(s) 65
Bsp143I GATC 2 cut(s) 54, 366
BspACI CCGC 1 cut(s) 135
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 225, 263
BspMI ACCTGC 1 cut(s) 224
BspPI GGATC 1 cut(s) 361
BspT104I TTCGAA 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 2 cut(s) 54, 366
Bst6I CTCTTC 1 cut(s) 270
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 389
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 343
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 2 cut(s) 57, 369
BstMBI GATC 2 cut(s) 54, 366
BstSCI CCNGG 2 cut(s) 258, 264
BsuRI GGCC 1 cut(s) 356
BtgI CCRYGG 1 cut(s) 343
BtsCI GGATG 1 cut(s) 289
BveI ACCTGC 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 389
Cfr13I GGNCC 2 cut(s) 262, 354
Csp6I GTAC 1 cut(s) 237
CviJI RGCY 2 cut(s) 356, 387
CviKI_1 RGCY 2 cut(s) 356, 387
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 210
DpnI GATC 2 cut(s) 56, 368
DpnII GATC 2 cut(s) 54, 366
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 73
FaiI YATR 2 cut(s) 295, 304
FbaI TGATCA 1 cut(s) 54
FokI GGATG 1 cut(s) 296
HaeIII GGCC 1 cut(s) 356
HapII CCGG 2 cut(s) 259, 265
HinfI GANTC 2 cut(s) 8, 23
HpaII CCGG 2 cut(s) 259, 265
HphI GGTGA 2 cut(s) 47, 64
Hpy188I TCNGA 3 cut(s) 79, 311, 375
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 380
HpyCH4V TGCA 3 cut(s) 233, 251, 391
HpyF3I CTNAG 1 cut(s) 210
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 2 cut(s) 54, 366
LpnPI CCDG 6 cut(s) 12, 145, 219, 272, 278, 370
LweI GCATC 2 cut(s) 70, 366
MalI GATC 2 cut(s) 56, 368
MboI GATC 2 cut(s) 54, 366
MboII GAAGA 2 cut(s) 79, 287
MfeI CAATTG 1 cut(s) 109
MluCI AATT 4 cut(s) 73, 109, 183, 397
MlyI GAGTC 2 cut(s) 17, 32
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 6 cut(s) 11, 36, 91, 151, 205, 214
MseI TTAA 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 2 cut(s) 259, 265
MspR9I CCNGG 2 cut(s) 260, 266
MunI CAATTG 1 cut(s) 109
NciI CCSGG 2 cut(s) 260, 266
NdeII GATC 2 cut(s) 54, 366
NlaIV GGNNCC 2 cut(s) 225, 263
NspV TTCGAA 1 cut(s) 65
PflFI GACNNNGTC 1 cut(s) 260
PleI GAGTC 2 cut(s) 16, 31
PpsI GAGTC 2 cut(s) 16, 31
PspN4I GGNNCC 2 cut(s) 225, 263
PspPI GGNCC 2 cut(s) 262, 354
PsyI GACNNNGTC 1 cut(s) 260
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 332
Sau3AI GATC 2 cut(s) 54, 366
Sau96I GGNCC 2 cut(s) 262, 354
SchI GAGTC 2 cut(s) 17, 32
ScrFI CCNGG 2 cut(s) 260, 266
SetI ASST 5 cut(s) 37, 216, 225, 238, 389
SfaNI GCATC 2 cut(s) 70, 366
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 1 cut(s) 262
Sse9I AATT 4 cut(s) 73, 109, 183, 397
SsiI CCGC 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 258, 264
TaqI TCGA 1 cut(s) 65
TasI AATT 4 cut(s) 73, 109, 183, 397
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TspDTI ATGAA 4 cut(s) 86, 135, 180, 195
TspGWI ACGGA 1 cut(s) 303
Tth111I GACNNNGTC 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.