Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002210

Physical Location & Seq

Genomic Coordinates Reverse (-)

69380842 .. 69381550

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG519400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGGAAGAAGCAGTCAAGAACAATGAACGGAAAAAGAAATCGGAGCTGCCCAAAGGCAATTCAACATAATGCCCAAGAAATCGGACCGGATGAAGGTGGAGGAGAGAGGGATGGGTCCGGTGGGGAGCTGGTGAGGTCATCTGTTGAGTTGGTCAAGACTGTGGAGACCAAAGTTTCGAACTGGACAGTGATGAGTGAGTGTTGGAAAGGGGAGTCTGGTTTAGGTGATGAGAGGAGAATGGTGATCATTGGTTCGAAGACGAATTCAGTTGCGAATGTAGGGGATGAGGAGAATGGCAATTGTTGTGATGAAAACAAGACCAACAGTGGAAGGAACGACAGGGTTGAGGAGAATGGGAAGTCATTGGATGAAATTGGGGGAGAGATAGATGGGGAAACTGAGGTGTTTGAGGTTCCCATTGTTGGTACGAGTGAAAATGGTCAAGACCGGGTGGGAGAAGAGTTGGATGGCAGAGTATGTGAGTTCTGTATTGGAGATTTTGTGTGGGGTAAGATTAAGAACAACCAGTGGTGGTCGGGCCAGATTTGTGATCCTTCAGGTGCTTCTGAGCTTGCAGCAAAATTGAGATTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

199

Amino Acids

21.71

Weight (kDa)

4.81

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27860 AT3G27860 AT5G40340 AT5G40340
fragaria_vesca	FvH4_6g50890 FvH4_6g50890
malus_domestica	MD09G1031100.v1.1
prunus_persica	Prupe.3G286500_v2.0.a1
pyrus_communis	pycom111g02480 pycom17g03040
rosa_chinensis	RchiOBHm_Chr2g0172271
rosa_laevigata	RLG00000006622 RLG00000018603 RLG00000022100 RLG00000024336 RLG00000028434 RLG00000037070
rosa_multiflora	Rmu_sc0005277.1_g000016 Rmu_sc0017785.1_g000001 Rmu_sc0017786.1_g000001 Rmu_ssc0000103.1_g000005
rosa_roxburghii	Rroxscaffold_4G00328330 Rroxscaffold_5G00367520
rosa_rugosa	Rorug02G0558300
rosa_samantha	Rh2AG320200 Rh2AG320300 Rh2AG475500 Rh2AG535600 Rh2AG535700 Rh2AG633300 Rh2BG646900 Rh2CG519400 Rh2CG613900 Rh2DG573700 Rh2DG573800 Rh2DG661800 Rh4BG393600 Rh4CG408400 Rh5AG278200 Rh5BG282800 Rh6AG204800 Rh6AG204900
rosa_wichuraiana	Rw2G052440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	548
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	1 cut(s)	430
AfiI	CCNNNNNNNGG	2 cut(s)	95, 425
AgsI	TTSAA	1 cut(s)	65
AluBI	AGCT	3 cut(s)	48, 130, 574
AluI	AGCT	3 cut(s)	48, 130, 574
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	548
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	2 cut(s)	48, 578
ApoI	RAATTY	1 cut(s)	265
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
AspS9I	GGNCC	3 cut(s)	86, 117, 541
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	3 cut(s)	145, 239, 256
AsuII	TTCGAA	2 cut(s)	179, 257
AvaII	GGWCC	2 cut(s)	86, 117
BbsI	GAAGAC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	35, 590
BccI	CCATC	3 cut(s)	107, 386, 464
BclI	TGATCA	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	161
BisI	GCNGC	2 cut(s)	49, 579
BlsI	GCNGC	2 cut(s)	50, 580
Bme1390I	CCNGG	1 cut(s)	452
Bme18I	GGWCC	2 cut(s)	86, 117
BmgT120I	GGNCC	3 cut(s)	86, 117, 541
BmiI	GGNNCC	2 cut(s)	118, 417
BmrFI	CCNGG	1 cut(s)	452
BpiI	GAAGAC	1 cut(s)	266
Bpu14I	TTCGAA	2 cut(s)	179, 257
BpuMI	CCSGG	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	161
BsaWI	WCCGGW	2 cut(s)	88, 119
BsaXI	ACNNNNNCTCC	2 cut(s)	489, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 425
Bse1I	ACTGG	2 cut(s)	188, 529
BseGI	GGATG	5 cut(s)	97, 118, 292, 376, 475
BseLI	CCNNNNNNNGG	2 cut(s)	95, 425
BseMII	CTCAG	2 cut(s)	393, 561
BseNI	ACTGG	2 cut(s)	188, 529
BseRI	GAGGAG	4 cut(s)	117, 250, 305, 365
BseXI	GCAGC	2 cut(s)	35, 590
BshFI	GGCC	1 cut(s)	543
BsiSI	CCGG	3 cut(s)	89, 120, 451
BslI	CCNNNNNNNGG	2 cut(s)	95, 425
BsmAI	GTCTC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	543
Bso31I	GGTCTC	1 cut(s)	161
Bsp119I	TTCGAA	2 cut(s)	179, 257
Bsp143I	GATC	2 cut(s)	246, 553
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	2 cut(s)	394, 562
BspLI	GGNNCC	2 cut(s)	118, 417
BspPI	GGATC	1 cut(s)	548
BspT104I	TTCGAA	2 cut(s)	179, 257
BspTNI	GGTCTC	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	188, 529
BssMI	GATC	2 cut(s)	246, 553
Bst4CI	ACNGT	3 cut(s)	163, 190, 329
Bst6I	CTCTTC	1 cut(s)	456
BstBI	TTCGAA	2 cut(s)	179, 257
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	2 cut(s)	402, 570
BstF5I	GGATG	5 cut(s)	97, 118, 292, 376, 475
BstKTI	GATC	2 cut(s)	249, 556
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	246, 553
BstSCI	CCNGG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	35, 590
BstV2I	GAAGAC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	543
BtsCI	GGATG	5 cut(s)	97, 118, 292, 376, 475
BtsIMutI	CAGTG	3 cut(s)	195, 334, 536
Cac8I	GCNNGC	1 cut(s)	576
Cfr13I	GGNCC	3 cut(s)	86, 117, 541
CpoI	CGGWCCG	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	429
CspI	CGGWCCG	1 cut(s)	86
CviAII	CATG	1 cut(s)	597
CviJI	RGCY	4 cut(s)	48, 130, 543, 574
CviKI_1	RGCY	4 cut(s)	48, 130, 543, 574
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	2 cut(s)	402, 570
DpnI	GATC	2 cut(s)	248, 555
DpnII	GATC	2 cut(s)	246, 553
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	2 cut(s)	86, 117
Eco57I	CTGAAG	1 cut(s)	543
EcoRI	GAATTC	1 cut(s)	265
FaeI	CATG	1 cut(s)	600
FaiI	YATR	3 cut(s)	69, 481, 598
FatI	CATG	1 cut(s)	596
FbaI	TGATCA	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	49, 579
FokI	GGATG	5 cut(s)	104, 125, 299, 383, 482
Fsp4HI	GCNGC	2 cut(s)	49, 579
GluI	GCNGC	2 cut(s)	49, 579
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	3 cut(s)	89, 120, 451
Hin1II	CATG	1 cut(s)	600
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	3 cut(s)	89, 120, 451
HphI	GGTGA	3 cut(s)	145, 239, 256
Hpy188I	TCNGA	3 cut(s)	45, 86, 571
Hpy188III	TCNNGA	3 cut(s)	18, 157, 446
HpyAV	CCTTC	3 cut(s)	89, 327, 567
HpyCH4III	ACNGT	3 cut(s)	163, 190, 329
HpyCH4V	TGCA	1 cut(s)	578
HpyF3I	CTNAG	2 cut(s)	402, 570
Hsp92II	CATG	1 cut(s)	600
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	246, 553
LmnI	GCTCC	2 cut(s)	45, 127
Lsp1109I	GCAGC	2 cut(s)	35, 590
MalI	GATC	2 cut(s)	248, 555
MboI	GATC	2 cut(s)	246, 553
MboII	GAAGA	3 cut(s)	19, 271, 473
MfeI	CAATTG	1 cut(s)	301
MluCI	AATT	5 cut(s)	60, 265, 301, 375, 584
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	2 cut(s)	185, 447
MnlI	CCTC	8 cut(s)	95, 102, 129, 228, 283, 343, 397, 406
MseI	TTAA	1 cut(s)	519
MspI	CCGG	3 cut(s)	89, 120, 451
MspR9I	CCNGG	1 cut(s)	452
MunI	CAATTG	1 cut(s)	301
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	2 cut(s)	246, 553
NlaIII	CATG	1 cut(s)	600
NlaIV	GGNNCC	2 cut(s)	118, 417
NspV	TTCGAA	2 cut(s)	179, 257
PkrI	GCNGC	2 cut(s)	50, 580
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	118, 417
PspPI	GGNCC	3 cut(s)	86, 117, 541
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
Rsr2I	CGGWCCG	1 cut(s)	86
RsrII	CGGWCCG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	2 cut(s)	49, 579
Sau3AI	GATC	2 cut(s)	246, 553
Sau96I	GGNCC	3 cut(s)	86, 117, 541
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	452
SetI	ASST	9 cut(s)	50, 100, 132, 140, 229, 408, 417, 565, 576
SfuI	TTCGAA	2 cut(s)	179, 257
SinI	GGWCC	2 cut(s)	86, 117
Sse9I	AATT	5 cut(s)	60, 265, 301, 375, 584
StyD4I	CCNGG	1 cut(s)	450
TaaI	ACNGT	3 cut(s)	163, 190, 329
TaqI	TCGA	2 cut(s)	179, 257
TasI	AATT	5 cut(s)	60, 265, 301, 375, 584
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	3 cut(s)	195, 334, 536
TseI	GCWGC	2 cut(s)	48, 578
TspDTI	ATGAA	4 cut(s)	41, 108, 327, 387
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	3 cut(s)	195, 334, 536
VpaK11BI	GGWCC	2 cut(s)	86, 117
XapI	RAATTY	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.