Rh2DG573700

PWWP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002210
Physical Location & Seq
Reverse (-)
80336439 .. 80336849
411 bp
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UTR
Exon/CDS
Intron
Rh2DG573700.1

Sequence Viewer

Length: 411 bp
ATGAGTGAGTATTGGAAAGGGGACTCTGGTTTAGGTGATGAGAGGAGAATGGTGATCATTGGTTCGAAGACGAATTCATATGCGAATGTAGGGGATGAGGAGAATGGCAATTGTTGTGATGAAAACAAGACCAACAGTGGTGGGAACGACGGGGTTGAGGAGAATGGGAAGTCATTGGATAAAATTGGGGGAGAGATAGATGGGGAAACTAAGGTGTTTGAGGTTCCCATTGCTGGTACGAGTGAAAATGGTCAAGACCGGGTGGGAGAAGAGTTGGATGGCAGAGTATGTGAGTTCTGTATTGGAGATTTTGTGTGGGGTAAGATTAAGAACAACCGGTGGTGGTCGGGCCGGATTTGTGATCCTTCAGATGCTTCTAAGCTTGCAGCGAAATTGAGATTGACAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

136

Amino Acids

14.81

Weight (kDa)

4.56

Isoelectric Point (pI)

28.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 356
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 233
AgeI ACCGGT 1 cut(s) 336
AluBI AGCT 1 cut(s) 382
AluI AGCT 1 cut(s) 382
AlwI GGATC 1 cut(s) 356
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 73
AsiGI ACCGGT 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 349
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 47, 64
AsuII TTCGAA 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 398
BccI CCATC 2 cut(s) 194, 272
BclI TGATCA 1 cut(s) 54
BcnI CCSGG 1 cut(s) 260
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 349
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 74
Bpu14I TTCGAA 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 260
BsaWI WCCGGW 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse118I RCCGGY 1 cut(s) 336
Bse3DI GCAATG 1 cut(s) 228
BseGI GGATG 2 cut(s) 100, 283
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 228
BseRI GAGGAG 3 cut(s) 58, 113, 173
BseXI GCAGC 1 cut(s) 398
BshFI GGCC 1 cut(s) 351
BshTI ACCGGT 1 cut(s) 336
BsiSI CCGG 3 cut(s) 259, 337, 352
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 1 cut(s) 351
Bsp119I TTCGAA 1 cut(s) 65
Bsp143I GATC 2 cut(s) 54, 361
BspANI GGCC 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 1 cut(s) 356
BspT104I TTCGAA 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 228
BsrFI RCCGGY 1 cut(s) 336
BssAI RCCGGY 1 cut(s) 336
BssMI GATC 2 cut(s) 54, 361
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 264
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 210, 378
BstF5I GGATG 2 cut(s) 100, 283
BstKTI GATC 2 cut(s) 57, 364
BstMBI GATC 2 cut(s) 54, 361
BstSCI CCNGG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 398
BstV2I GAAGAC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 351
BtsCI GGATG 2 cut(s) 100, 283
BtsIMutI CAGTG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 384
Cfr10I RCCGGY 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 237
CspAI ACCGGT 1 cut(s) 336
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviJI RGCY 2 cut(s) 351, 382
CviKI_1 RGCY 2 cut(s) 351, 382
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 2 cut(s) 210, 378
DpnI GATC 2 cut(s) 56, 363
DpnII GATC 2 cut(s) 54, 361
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 73
FaiI YATR 3 cut(s) 79, 81, 289
FaqI GGGAC 1 cut(s) 35
FauNDI CATATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 2 cut(s) 107, 290
Fsp4HI GCNGC 1 cut(s) 387
GluI GCNGC 1 cut(s) 387
HaeIII GGCC 1 cut(s) 351
HapII CCGG 3 cut(s) 259, 337, 352
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 1 cut(s) 23
HpaII CCGG 3 cut(s) 259, 337, 352
HphI GGTGA 2 cut(s) 47, 64
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 1 cut(s) 254
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 375
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 386
HpyF3I CTNAG 2 cut(s) 210, 378
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 2 cut(s) 54, 361
LpnPI CCDG 5 cut(s) 12, 219, 272, 350, 365
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 1 cut(s) 361
MalI GATC 2 cut(s) 56, 363
MboI GATC 2 cut(s) 54, 361
MboII GAAGA 2 cut(s) 79, 281
MfeI CAATTG 1 cut(s) 109
MluCI AATT 5 cut(s) 73, 109, 183, 392, 405
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 4 cut(s) 36, 91, 151, 214
MseI TTAA 1 cut(s) 327
MspI CCGG 3 cut(s) 259, 337, 352
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 1 cut(s) 109
NciI CCSGG 1 cut(s) 260
NdeI CATATG 1 cut(s) 79
NdeII GATC 2 cut(s) 54, 361
NlaIV GGNNCC 1 cut(s) 225
NspV TTCGAA 1 cut(s) 65
PinAI ACCGGT 1 cut(s) 336
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 349
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 2 cut(s) 54, 361
Sau96I GGNCC 1 cut(s) 349
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 260
SetI ASST 4 cut(s) 37, 216, 225, 384
SfaNI GCATC 1 cut(s) 361
SfuI TTCGAA 1 cut(s) 65
Sse9I AATT 5 cut(s) 73, 109, 183, 392, 405
StyD4I CCNGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 137
TaqI TCGA 1 cut(s) 65
TasI AATT 5 cut(s) 73, 109, 183, 392, 405
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 1 cut(s) 142
TseI GCWGC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 66, 135
TspRI CASTG 1 cut(s) 142
XapI RAATTY 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.