Rmu_sc0017786.1_g000001

PWWP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017786.1
OG0002210
Physical Location & Seq
Forward (+)
3262 .. 3908
647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017786.1_g000001.1.cds

Sequence Viewer

Length: 381 bp
atgcctaagaaatcggaccggatgaaggtagaggagagagggatgggtctggtggggagctgggatgaggagaatggcaattgttgtgatgaaaacaagaccaacggtggtgggaacgacagggttgaggagaatgggaagtcattggatgaaattgggggagagatagatcgggaaactgaggtgtttgaggttcccattgcaggtacgagtgaaaatggtcaagaccgggtgggagaagagttggatgatggagtatgtgagttttatataggagattttgtgtggggtaagattaagaaccacctgtggtggtcgggccagatttgtgatctttcagatgcttatgagcttgcagcgaaattgagattgagaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

126

Amino Acids

14.1

Weight (kDa)

4.39

Isoelectric Point (pI)

28.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 194
AcsI RAATTY 1 cut(s) 375
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 25, 203
AluBI AGCT 2 cut(s) 60, 352
AluI AGCT 2 cut(s) 60, 352
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 375
AspS9I GGNCC 2 cut(s) 16, 319
AsuC2I CCSGG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 368
BccI CCATC 2 cut(s) 37, 245
BcnI CCSGG 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 194
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 16, 319
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 331
BpuMI CCSGG 1 cut(s) 230
BsaWI WCCGGW 1 cut(s) 18
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 203
Bse3DI GCAATG 1 cut(s) 198
BseGI GGATG 5 cut(s) 27, 48, 70, 154, 253
BseLI CCNNNNNNNGG 2 cut(s) 25, 203
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 3 cut(s) 47, 83, 143
BseXI GCAGC 1 cut(s) 368
BseYI CCCAGC 1 cut(s) 60
BshFI GGCC 1 cut(s) 321
BsiSI CCGG 2 cut(s) 19, 229
BslI CCNNNNNNNGG 2 cut(s) 25, 203
BsnI GGCC 1 cut(s) 321
Bsp143I GATC 2 cut(s) 169, 331
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 195
BspMI ACCTGC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 198
BssMI GATC 2 cut(s) 169, 331
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 2 cut(s) 6, 180
BstF5I GGATG 5 cut(s) 27, 48, 70, 154, 253
BstKTI GATC 2 cut(s) 172, 334
BstMBI GATC 2 cut(s) 169, 331
BstSCI CCNGG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 368
BsuRI GGCC 1 cut(s) 321
BtsCI GGATG 5 cut(s) 27, 48, 70, 154, 253
BveI ACCTGC 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 16, 319
CpoI CGGWCCG 1 cut(s) 16
Csp6I GTAC 1 cut(s) 207
CspCI CAANNNNNGTGG 2 cut(s) 91, 126
CspI CGGWCCG 1 cut(s) 16
CviJI RGCY 3 cut(s) 60, 321, 352
CviKI_1 RGCY 3 cut(s) 60, 321, 352
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 2 cut(s) 6, 180
DpnI GATC 2 cut(s) 171, 333
DpnII GATC 2 cut(s) 169, 331
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 16
FaiI YATR 4 cut(s) 259, 270, 272, 348
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 5 cut(s) 34, 55, 77, 161, 260
Fsp4HI GCNGC 1 cut(s) 357
GluI GCNGC 1 cut(s) 357
GsaI CCCAGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 321
HapII CCGG 2 cut(s) 19, 229
HpaII CCGG 2 cut(s) 19, 229
Hpy188I TCNGA 2 cut(s) 16, 340
Hpy188III TCNNGA 2 cut(s) 173, 224
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 203, 356
HpyF3I CTNAG 2 cut(s) 6, 180
Kzo9I GATC 2 cut(s) 169, 331
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 8 cut(s) 32, 35, 46, 106, 189, 242, 320, 335
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 1 cut(s) 331
MalI GATC 2 cut(s) 171, 333
MboI GATC 2 cut(s) 169, 331
MboII GAAGA 1 cut(s) 251
MfeI CAATTG 1 cut(s) 79
MluCI AATT 4 cut(s) 79, 153, 362, 375
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 6 cut(s) 25, 32, 61, 121, 175, 184
MseI TTAA 1 cut(s) 297
MspI CCGG 2 cut(s) 19, 229
MspR9I CCNGG 1 cut(s) 230
MunI CAATTG 1 cut(s) 79
NciI CCSGG 1 cut(s) 230
NdeII GATC 2 cut(s) 169, 331
NlaIV GGNNCC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 358
PspFI CCCAGC 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 2 cut(s) 16, 319
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
Rsr2I CGGWCCG 1 cut(s) 16
RsrII CGGWCCG 1 cut(s) 16
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 2 cut(s) 169, 331
Sau96I GGNCC 2 cut(s) 16, 319
ScrFI CCNGG 1 cut(s) 230
SetI ASST 7 cut(s) 30, 62, 186, 195, 208, 309, 354
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 1 cut(s) 16
Sse9I AATT 4 cut(s) 79, 153, 362, 375
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 107
TasI AATT 4 cut(s) 79, 153, 362, 375
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TseI GCWGC 1 cut(s) 356
TspDTI ATGAA 3 cut(s) 38, 105, 165
VpaK11BI GGWCC 1 cut(s) 16
XapI RAATTY 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.