Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002210

Physical Location & Seq

Genomic Coordinates Forward (+)

37546782 .. 37547583

Gene Structure 802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG278200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCCCCACTCCACCGATTAACACCAGCAGCAATTTCTTTCCTCCTCCTCCTTTGGACCTCCACCACCAGTACCAGACATAGAAGGACAATGAGGAAGAAGCAGTCAAGAACAATGAACGGAAAAAGAAATCGGAGCTGCCTAAAGTCAATTCAACATAATGCCCAAGAAATCGGACCGGATGAAGGTGGAGGAGAGAGGGATGGGTTCGGTGGGGAGCTGGTGAGGTCATCTGTTGAGTTGGTCAAGACTGTGGAGACCAAAGTTTCGGTTGGTTACACAATTGGACGTGATGAGAGGAGAATGGTGATCATTGGTTCAAAGACGAATTCAGATGCGAATGTAGGGGATGAGGAGAATGGCAATTGTTGTGATGAAAACAAGACCAACAGTGGTGGGAACGACGGGGTTGAGGAGAATGGGAAGTCATTGGATGAAATTGGGGGAGAGATAGATGGGGAAACTGAGGTGTTTGAGGTTCCTATTGCTGGTACGAGTGAAAATGGTCAAGACCGGGTGGAAGAAGAGTTGGATGGCAGAGTATGTGAGTTCTGTATTGGAGATTTTGTGTGGGGTAAGATTAAGAACAACCAGTGGCGGTCGGGCTGGATTTGTGATCCTTCAGATGCTTCTGAGCTTGCAGCGAAATTGAGATTGACAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

221

Amino Acids

24.29

Weight (kDa)

5.1

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27860 AT3G27860 AT5G40340 AT5G40340
fragaria_vesca	FvH4_6g50890 FvH4_6g50890
malus_domestica	MD09G1031100.v1.1
prunus_persica	Prupe.3G286500_v2.0.a1
pyrus_communis	pycom111g02480 pycom17g03040
rosa_chinensis	RchiOBHm_Chr2g0172271
rosa_laevigata	RLG00000006622 RLG00000018603 RLG00000022100 RLG00000024336 RLG00000028434 RLG00000037070
rosa_multiflora	Rmu_sc0005277.1_g000016 Rmu_sc0017785.1_g000001 Rmu_sc0017786.1_g000001 Rmu_ssc0000103.1_g000005
rosa_roxburghii	Rroxscaffold_4G00328330 Rroxscaffold_5G00367520
rosa_rugosa	Rorug02G0558300
rosa_samantha	Rh2AG320200 Rh2AG320300 Rh2AG475500 Rh2AG535600 Rh2AG535700 Rh2AG633300 Rh2BG646900 Rh2CG519400 Rh2CG613900 Rh2DG573700 Rh2DG573800 Rh2DG661800 Rh4BG393600 Rh4CG408400 Rh5AG278200 Rh5BG282800 Rh6AG204800 Rh6AG204900
rosa_wichuraiana	Rw2G052440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	598
AclWI	GGATC	1 cut(s)	611
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	2 cut(s)	73, 493
AfiI	CCNNNNNNNGG	2 cut(s)	185, 488
AgsI	TTSAA	2 cut(s)	155, 321
AjiI	CACGTC	1 cut(s)	290
AluBI	AGCT	3 cut(s)	138, 220, 637
AluI	AGCT	3 cut(s)	138, 220, 637
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	611
ApeKI	GCWGC	3 cut(s)	29, 138, 641
ApoI	RAATTY	1 cut(s)	328
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AspS9I	GGNCC	2 cut(s)	57, 176
AsuC2I	CCSGG	1 cut(s)	515
AsuHPI	GGTGA	2 cut(s)	235, 319
AvaII	GGWCC	2 cut(s)	57, 176
BbvI	GCAGC	3 cut(s)	41, 125, 653
BccI	CCATC	3 cut(s)	197, 449, 527
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	251
BisI	GCNGC	3 cut(s)	30, 139, 642
BlsI	GCNGC	3 cut(s)	31, 140, 643
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	2 cut(s)	57, 176
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	57, 176
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	2 cut(s)	325, 616
BpuMI	CCSGG	1 cut(s)	515
BsaI	GGTCTC	1 cut(s)	251
BsaWI	WCCGGW	1 cut(s)	178
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 488
Bse1I	ACTGG	2 cut(s)	69, 592
BseGI	GGATG	5 cut(s)	187, 208, 355, 439, 538
BseLI	CCNNNNNNNGG	2 cut(s)	185, 488
BseMII	CTCAG	2 cut(s)	456, 624
BseNI	ACTGG	2 cut(s)	69, 592
BseRI	GAGGAG	6 cut(s)	35, 38, 207, 313, 368, 428
BseXI	GCAGC	3 cut(s)	41, 125, 653
Bsh1285I	CGRYCG	1 cut(s)	602
BsiEI	CGRYCG	1 cut(s)	602
BsiSI	CCGG	2 cut(s)	179, 514
BslI	CCNNNNNNNGG	2 cut(s)	185, 488
BsmAI	GTCTC	1 cut(s)	251
Bso31I	GGTCTC	1 cut(s)	251
Bsp143I	GATC	2 cut(s)	309, 616
BspACI	CCGC	1 cut(s)	598
BspCNI	CTCAG	2 cut(s)	457, 625
BspLI	GGNNCC	1 cut(s)	480
BspPI	GGATC	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	69, 592
BssMI	GATC	2 cut(s)	309, 616
Bst4CI	ACNGT	2 cut(s)	253, 392
Bst6I	CTCTTC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	2 cut(s)	465, 633
BstF5I	GGATG	5 cut(s)	187, 208, 355, 439, 538
BstKTI	GATC	2 cut(s)	312, 619
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	2 cut(s)	309, 616
BstMCI	CGRYCG	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	513
BstV1I	GCAGC	3 cut(s)	41, 125, 653
BtrI	CACGTC	1 cut(s)	290
BtsCI	GGATG	5 cut(s)	187, 208, 355, 439, 538
BtsIMutI	CAGTG	2 cut(s)	397, 599
Cac8I	GCNNGC	1 cut(s)	639
Cfr13I	GGNCC	2 cut(s)	57, 176
CpoI	CGGWCCG	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	72, 492
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CspI	CGGWCCG	1 cut(s)	176
CviJI	RGCY	4 cut(s)	138, 220, 606, 637
CviKI_1	RGCY	4 cut(s)	138, 220, 606, 637
CviQI	GTAC	2 cut(s)	72, 492
DdeI	CTNAG	2 cut(s)	465, 633
DpnI	GATC	2 cut(s)	311, 618
DpnII	GATC	2 cut(s)	309, 616
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	2 cut(s)	57, 176
Eco57I	CTGAAG	1 cut(s)	606
EcoRI	GAATTC	1 cut(s)	328
FaiI	YATR	3 cut(s)	81, 159, 544
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	30, 139, 642
FokI	GGATG	5 cut(s)	194, 215, 362, 446, 545
Fsp4HI	GCNGC	3 cut(s)	30, 139, 642
GluI	GCNGC	3 cut(s)	30, 139, 642
HapII	CCGG	2 cut(s)	179, 514
HpaII	CCGG	2 cut(s)	179, 514
HphI	GGTGA	2 cut(s)	235, 319
Hpy188I	TCNGA	5 cut(s)	135, 176, 334, 625, 634
Hpy188III	TCNNGA	3 cut(s)	108, 247, 509
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	3 cut(s)	78, 179, 630
HpyCH4III	ACNGT	2 cut(s)	253, 392
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	1 cut(s)	641
HpyF3I	CTNAG	2 cut(s)	465, 633
HpySE526I	ACGT	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	2 cut(s)	309, 616
LmnI	GCTCC	2 cut(s)	135, 217
LpnPI	CCDG	9 cut(s)	39, 82, 88, 192, 206, 474, 527, 592, 605
Lsp1109I	GCAGC	3 cut(s)	41, 125, 653
LweI	GCATC	2 cut(s)	325, 616
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	2 cut(s)	311, 618
MboI	GATC	2 cut(s)	309, 616
MboII	GAAGA	3 cut(s)	109, 533, 536
MfeI	CAATTG	2 cut(s)	282, 364
MluCI	AATT	8 cut(s)	33, 150, 282, 328, 364, 438, 647, 660
MmeI	TCCRAC	1 cut(s)	510
MseI	TTAA	2 cut(s)	20, 582
MspI	CCGG	2 cut(s)	179, 514
MspR9I	CCNGG	1 cut(s)	515
MunI	CAATTG	2 cut(s)	282, 364
NciI	CCSGG	1 cut(s)	515
NdeII	GATC	2 cut(s)	309, 616
NlaIV	GGNNCC	1 cut(s)	480
PkrI	GCNGC	3 cut(s)	31, 140, 643
PspN4I	GGNNCC	1 cut(s)	480
PspPI	GGNCC	2 cut(s)	57, 176
RsaI	GTAC	2 cut(s)	73, 493
RsaNI	GTAC	2 cut(s)	72, 492
Rsr2I	CGGWCCG	1 cut(s)	176
RsrII	CGGWCCG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	20, 582
SatI	GCNGC	3 cut(s)	30, 139, 642
Sau3AI	GATC	2 cut(s)	309, 616
Sau96I	GGNCC	2 cut(s)	57, 176
ScrFI	CCNGG	1 cut(s)	515
SetI	ASST	9 cut(s)	62, 140, 190, 222, 230, 292, 471, 480, 639
SfaNI	GCATC	2 cut(s)	325, 616
SinI	GGWCC	2 cut(s)	57, 176
Sse9I	AATT	8 cut(s)	33, 150, 282, 328, 364, 438, 647, 660
SsiI	CCGC	1 cut(s)	598
StyD4I	CCNGG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	253, 392
TaiI	ACGT	1 cut(s)	292
TasI	AATT	8 cut(s)	33, 150, 282, 328, 364, 438, 647, 660
Tru1I	TTAA	2 cut(s)	20, 582
Tru9I	TTAA	2 cut(s)	20, 582
TscAI	CASTG	2 cut(s)	397, 599
TseI	GCWGC	3 cut(s)	29, 138, 641
TspDTI	ATGAA	4 cut(s)	131, 198, 390, 450
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	397, 599
VpaK11BI	GGWCC	2 cut(s)	57, 176
XapI	RAATTY	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.