PWWP domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27860 AT3G27860 AT5G40340 AT5G40340 |
| fragaria_vesca | FvH4_6g50890 FvH4_6g50890 |
| malus_domestica | MD09G1031100.v1.1 |
| prunus_persica | Prupe.3G286500_v2.0.a1 |
| pyrus_communis | pycom111g02480 pycom17g03040 |
| rosa_chinensis | RchiOBHm_Chr2g0172271 |
| rosa_laevigata | RLG00000006622 RLG00000018603 RLG00000022100 RLG00000024336 RLG00000028434 RLG00000037070 |
| rosa_multiflora | Rmu_sc0005277.1_g000016 Rmu_sc0017785.1_g000001 Rmu_sc0017786.1_g000001 Rmu_ssc0000103.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00328330 Rroxscaffold_5G00367520 |
| rosa_rugosa | Rorug02G0558300 |
| rosa_samantha | Rh2AG320200 Rh2AG320300 Rh2AG475500 Rh2AG535600 Rh2AG535700 Rh2AG633300 Rh2BG646900 Rh2CG519400 Rh2CG613900 Rh2DG573700 Rh2DG573800 Rh2DG661800 Rh4BG393600 Rh4CG408400 Rh5AG278200 Rh5BG282800 Rh6AG204800 Rh6AG204900 |
| rosa_wichuraiana | Rw2G052440 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 176 |
| Acc36I | ACCTGC | 1 cut(s) | 176 |
| AcsI | RAATTY | 1 cut(s) | 25 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 185 |
| AluBI | AGCT | 1 cut(s) | 334 |
| AluI | AGCT | 1 cut(s) | 334 |
| AoxI | GGCC | 1 cut(s) | 301 |
| ApoI | RAATTY | 1 cut(s) | 25 |
| AspS9I | GGNCC | 1 cut(s) | 301 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| AsuII | TTCGAA | 1 cut(s) | 17 |
| BauI | CACGAG | 1 cut(s) | 289 |
| BbsI | GAAGAC | 1 cut(s) | 26 |
| BccI | CCATC | 1 cut(s) | 146 |
| BclI | TGATCA | 1 cut(s) | 6 |
| BfuAI | ACCTGC | 1 cut(s) | 176 |
| BmgT120I | GGNCC | 1 cut(s) | 301 |
| BmiI | GGNNCC | 1 cut(s) | 177 |
| BmrI | ACTGGG | 1 cut(s) | 220 |
| BmsI | GCATC | 1 cut(s) | 313 |
| BmuI | ACTGGG | 1 cut(s) | 220 |
| BpiI | GAAGAC | 1 cut(s) | 26 |
| Bpu14I | TTCGAA | 1 cut(s) | 17 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 249, 279 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 185 |
| Bse1I | ACTGG | 1 cut(s) | 215 |
| Bse3DI | GCAATG | 1 cut(s) | 180 |
| BseGI | GGATG | 3 cut(s) | 52, 136, 235 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 185 |
| BseMI | GCAATG | 1 cut(s) | 180 |
| BseMII | CTCAG | 2 cut(s) | 153, 321 |
| BseNI | ACTGG | 1 cut(s) | 215 |
| BseRI | GAGGAG | 2 cut(s) | 65, 125 |
| BshFI | GGCC | 1 cut(s) | 303 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 185 |
| BsnI | GGCC | 1 cut(s) | 303 |
| Bsp119I | TTCGAA | 1 cut(s) | 17 |
| Bsp143I | GATC | 2 cut(s) | 6, 313 |
| BspANI | GGCC | 1 cut(s) | 303 |
| BspCNI | CTCAG | 2 cut(s) | 154, 322 |
| BspLI | GGNNCC | 1 cut(s) | 177 |
| BspMI | ACCTGC | 1 cut(s) | 176 |
| BspT104I | TTCGAA | 1 cut(s) | 17 |
| BsrDI | GCAATG | 1 cut(s) | 180 |
| BsrI | ACTGG | 1 cut(s) | 215 |
| BssMI | GATC | 2 cut(s) | 6, 313 |
| BssSI | CACGAG | 1 cut(s) | 289 |
| Bst2BI | CACGAG | 1 cut(s) | 289 |
| Bst4CI | ACNGT | 1 cut(s) | 89 |
| Bst6I | CTCTTC | 1 cut(s) | 216 |
| BstBI | TTCGAA | 1 cut(s) | 17 |
| BstC8I | GCNNGC | 1 cut(s) | 336 |
| BstDEI | CTNAG | 2 cut(s) | 162, 330 |
| BstF5I | GGATG | 3 cut(s) | 52, 136, 235 |
| BstKTI | GATC | 2 cut(s) | 9, 316 |
| BstMBI | GATC | 2 cut(s) | 6, 313 |
| BstV2I | GAAGAC | 1 cut(s) | 26 |
| BsuRI | GGCC | 1 cut(s) | 303 |
| BtsCI | GGATG | 3 cut(s) | 52, 136, 235 |
| BveI | ACCTGC | 1 cut(s) | 176 |
| Cac8I | GCNNGC | 1 cut(s) | 336 |
| Cfr13I | GGNCC | 1 cut(s) | 301 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 73, 108 |
| CviJI | RGCY | 2 cut(s) | 303, 334 |
| CviKI_1 | RGCY | 2 cut(s) | 303, 334 |
| DdeI | CTNAG | 2 cut(s) | 162, 330 |
| DpnI | GATC | 2 cut(s) | 8, 315 |
| DpnII | GATC | 2 cut(s) | 6, 313 |
| Eam1104I | CTCTTC | 1 cut(s) | 216 |
| EarI | CTCTTC | 1 cut(s) | 216 |
| EcoRI | GAATTC | 1 cut(s) | 25 |
| FaiI | YATR | 4 cut(s) | 31, 33, 241, 250 |
| FauNDI | CATATG | 1 cut(s) | 31 |
| FbaI | TGATCA | 1 cut(s) | 6 |
| FokI | GGATG | 3 cut(s) | 59, 143, 242 |
| HaeIII | GGCC | 1 cut(s) | 303 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 3 cut(s) | 257, 322, 331 |
| Hpy99I | CGWCG | 1 cut(s) | 104 |
| HpyCH4III | ACNGT | 1 cut(s) | 89 |
| HpyCH4V | TGCA | 2 cut(s) | 185, 338 |
| HpyF3I | CTNAG | 2 cut(s) | 162, 330 |
| Ksp22I | TGATCA | 1 cut(s) | 6 |
| Kzo9I | GATC | 2 cut(s) | 6, 313 |
| LpnPI | CCDG | 3 cut(s) | 171, 196, 317 |
| LweI | GCATC | 1 cut(s) | 313 |
| MalI | GATC | 2 cut(s) | 8, 315 |
| MboI | GATC | 2 cut(s) | 6, 313 |
| MboII | GAAGA | 2 cut(s) | 31, 233 |
| MfeI | CAATTG | 1 cut(s) | 61 |
| MluCI | AATT | 5 cut(s) | 25, 61, 135, 344, 358 |
| MmeI | TCCRAC | 1 cut(s) | 207 |
| MnlI | CCTC | 4 cut(s) | 43, 103, 157, 166 |
| MseI | TTAA | 1 cut(s) | 279 |
| MunI | CAATTG | 1 cut(s) | 61 |
| NdeI | CATATG | 1 cut(s) | 31 |
| NdeII | GATC | 2 cut(s) | 6, 313 |
| NlaIV | GGNNCC | 1 cut(s) | 177 |
| NspV | TTCGAA | 1 cut(s) | 17 |
| PaqCI | CACCTGC | 1 cut(s) | 176 |
| PspN4I | GGNNCC | 1 cut(s) | 177 |
| PspPI | GGNCC | 1 cut(s) | 301 |
| SaqAI | TTAA | 1 cut(s) | 279 |
| Sau3AI | GATC | 2 cut(s) | 6, 313 |
| Sau96I | GGNCC | 1 cut(s) | 301 |
| SetI | ASST | 4 cut(s) | 168, 177, 190, 336 |
| SfaNI | GCATC | 1 cut(s) | 313 |
| SfuI | TTCGAA | 1 cut(s) | 17 |
| SgeI | CNNG | 9 cut(s) | 91, 115, 198, 223, 301, 303, 312, 316, 347 |
| Sse9I | AATT | 5 cut(s) | 25, 61, 135, 344, 358 |
| TaaI | ACNGT | 1 cut(s) | 89 |
| TaqI | TCGA | 1 cut(s) | 17 |
| TasI | AATT | 5 cut(s) | 25, 61, 135, 344, 358 |
| Tru1I | TTAA | 1 cut(s) | 279 |
| Tru9I | TTAA | 1 cut(s) | 279 |
| TspDTI | ATGAA | 3 cut(s) | 18, 87, 147 |
| TspGWI | ACGGA | 1 cut(s) | 249 |
| XapI | RAATTY | 1 cut(s) | 25 |