Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002210

Physical Location & Seq

Genomic Coordinates Reverse (-)

88055713 .. 88056704

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037070

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAGGAAGAAGCAGTCAAGAACAATGAACGGAAAAAGAAATCGGAGCTGCCCAAAGTCAATTCAACACAATGCCCAAGAAATTGGACCAGATGAAGGTGGAGGAGAGTGGGATGGGTCCGGTGGGGAGCTAGTGAGGACGTCTGTTGAGTTAGTCAAGACTGTGGAGGCCAAAGTTTCAATTGTTTACACAATCGCACGTACTCAATCTCTAGCCCAAAGTTACGTCGCCGACCACAATTCAAAGTCAGCCATCCGTTACCCAATTTGCCGGAATCTCCGACCGTCACAAGCACCTCAAATGGCATTTAGAGGGCGTGGATGTGGACGAGGTGGTTTTGGAAGCTATCGCGGTATTAAAGAAGAACCCTTTGTGTTGTTCCCTGATATTAACATACCTGATGCCACAGATATTTTGTCCACCTCCGATCAGAAGAAAAACAAGGAAGATATGTTGTTGGATCAAACAAAGTTTGGAGTAGCTGAACAAAACAGGTCATTGGATGAAATTGGGGGAGAGATAGAGGGGGAAACTGAGGTGATTGAGATTCCCACTGCCGGTATGAGTGAAAATGGTCAAGACCGGGTGGGAGAAGAGTTGGGTGACGGAGTATGTGAGTTATGTATCAGAGATTTTGTGTGGGATAAGATTAAGAACCACCCGTGGTACTCGGGCCGAATTTGTGATCCTTCATATGCTTCTGAGCTTGCAGCGAAATTGAGATCCAAGGACAAACTTATCATAGCATACTTTGGGGATGTCAATTCAAGAAAACTAATTTGGGTGTGGTTTGAGATTGAGAATTTGAGGCTTTCCAGTCCATCCCATCTCCTTCTTACACCTTCTTCTCCACCCCAAACCCAATCATCAAGGCTTGAGAGAATGGTTTTTTCTGGGTTTTTCTTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

304

Amino Acids

33.89

Weight (kDa)

6.48

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27860 AT3G27860 AT5G40340 AT5G40340
fragaria_vesca	FvH4_6g50890 FvH4_6g50890
malus_domestica	MD09G1031100.v1.1
prunus_persica	Prupe.3G286500_v2.0.a1
pyrus_communis	pycom111g02480 pycom17g03040
rosa_chinensis	RchiOBHm_Chr2g0172271
rosa_laevigata	RLG00000006622 RLG00000018603 RLG00000022100 RLG00000024336 RLG00000028434 RLG00000037070
rosa_multiflora	Rmu_sc0005277.1_g000016 Rmu_sc0017785.1_g000001 Rmu_sc0017786.1_g000001 Rmu_ssc0000103.1_g000005
rosa_roxburghii	Rroxscaffold_4G00328330 Rroxscaffold_5G00367520
rosa_rugosa	Rorug02G0558300
rosa_samantha	Rh2AG320200 Rh2AG320300 Rh2AG475500 Rh2AG535600 Rh2AG535700 Rh2AG633300 Rh2BG646900 Rh2CG519400 Rh2CG613900 Rh2DG573700 Rh2DG573800 Rh2DG661800 Rh4BG393600 Rh4CG408400 Rh5AG278200 Rh5BG282800 Rh6AG204800 Rh6AG204900
rosa_wichuraiana	Rw2G052440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	143
AccII	CGCG	1 cut(s)	351
AciI	CCGC	1 cut(s)	351
AclWI	GGATC	3 cut(s)	468, 680, 717
AcsI	RAATTY	2 cut(s)	678, 802
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	2 cut(s)	202, 668
AfiI	CCNNNNNNNGG	2 cut(s)	95, 557
AgsI	TTSAA	4 cut(s)	65, 180, 243, 768
AjuI	GAANNNNNNNTTGG	2 cut(s)	763, 795
AluBI	AGCT	5 cut(s)	48, 130, 345, 482, 706
AluI	AGCT	5 cut(s)	48, 130, 345, 482, 706
AlwI	GGATC	3 cut(s)	468, 680, 717
Ama87I	CYCGRG	1 cut(s)	670
AoxI	GGCC	2 cut(s)	168, 673
ApeKI	GCWGC	2 cut(s)	48, 710
ApoI	RAATTY	2 cut(s)	678, 802
AspS9I	GGNCC	3 cut(s)	86, 117, 673
AsuC2I	CCSGG	1 cut(s)	584
AsuHPI	GGTGA	2 cut(s)	550, 614
AvaI	CYCGRG	1 cut(s)	670
AvaII	GGWCC	2 cut(s)	86, 117
BbvI	GCAGC	2 cut(s)	35, 722
BccI	CCATC	4 cut(s)	107, 260, 829, 834
BcnI	CCSGG	1 cut(s)	584
BfaI	CTAG	2 cut(s)	131, 212
BisI	GCNGC	2 cut(s)	49, 711
BlsI	GCNGC	2 cut(s)	50, 712
Bme1390I	CCNGG	1 cut(s)	584
Bme18I	GGWCC	2 cut(s)	86, 117
BmeT110I	CYCGRG	1 cut(s)	670
BmgT120I	GGNCC	3 cut(s)	86, 117, 673
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	584
BmsI	GCATC	1 cut(s)	391
BpuEI	CTTGAG	1 cut(s)	896
BpuMI	CCSGG	1 cut(s)	584
BsaAI	YACGTR	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	662, 726
BsaWI	WCCGGW	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 557
Bse118I	RCCGGY	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	816
BseDI	CCNNGG	2 cut(s)	662, 726
BseGI	GGATG	6 cut(s)	118, 252, 326, 508, 763, 821
BseLI	CCNNNNNNNGG	2 cut(s)	95, 557
BseMII	CTCAG	2 cut(s)	525, 693
BseNI	ACTGG	1 cut(s)	816
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	35, 722
Bsh1236I	CGCG	1 cut(s)	351
Bsh1285I	CGRYCG	1 cut(s)	284
BshFI	GGCC	2 cut(s)	170, 675
BsiEI	CGRYCG	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	670
BsiSI	CCGG	4 cut(s)	120, 271, 558, 583
BslI	CCNNNNNNNGG	2 cut(s)	95, 557
BsnI	GGCC	2 cut(s)	170, 675
BsoBI	CYCGRG	1 cut(s)	670
Bsp143I	GATC	4 cut(s)	427, 460, 685, 722
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	2 cut(s)	170, 675
BspCNI	CTCAG	2 cut(s)	526, 694
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	3 cut(s)	468, 680, 717
BsrFI	RCCGGY	1 cut(s)	557
BsrI	ACTGG	1 cut(s)	816
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	2 cut(s)	662, 726
BssMI	GATC	4 cut(s)	427, 460, 685, 722
BssNI	GRCGYC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	726
Bst4CI	ACNGT	2 cut(s)	163, 285
Bst6I	CTCTTC	1 cut(s)	588
BstACI	GRCGYC	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	708
BstDEI	CTNAG	2 cut(s)	534, 702
BstDSI	CCRYGG	1 cut(s)	662
BstF5I	GGATG	6 cut(s)	118, 252, 326, 508, 763, 821
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	4 cut(s)	430, 463, 688, 725
BstMBI	GATC	4 cut(s)	427, 460, 685, 722
BstMCI	CGRYCG	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	582
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	35, 722
BstX2I	RGATCY	1 cut(s)	722
BstXI	CCANNNNNNTGG	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	722
BsuRI	GGCC	2 cut(s)	170, 675
BtgI	CCRYGG	1 cut(s)	662
BtsCI	GGATG	6 cut(s)	118, 252, 326, 508, 763, 821
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	1 cut(s)	552
Cac8I	GCNNGC	1 cut(s)	708
Cfr10I	RCCGGY	1 cut(s)	557
Cfr13I	GGNCC	3 cut(s)	86, 117, 673
Csp6I	GTAC	2 cut(s)	201, 667
CviAII	CATG	1 cut(s)	909
CviQI	GTAC	2 cut(s)	201, 667
DdeI	CTNAG	2 cut(s)	534, 702
DpnI	GATC	4 cut(s)	429, 462, 687, 724
DpnII	GATC	4 cut(s)	427, 460, 685, 722
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco130I	CCWWGG	1 cut(s)	726
Eco47I	GGWCC	2 cut(s)	86, 117
Eco88I	CYCGRG	1 cut(s)	670
EcoT14I	CCWWGG	1 cut(s)	726
ErhI	CCWWGG	1 cut(s)	726
FaeI	CATG	1 cut(s)	912
FatI	CATG	1 cut(s)	908
FauNDI	CATATG	1 cut(s)	694
Fnu4HI	GCNGC	2 cut(s)	49, 711
FokI	GGATG	6 cut(s)	125, 239, 333, 515, 770, 808
Fsp4HI	GCNGC	2 cut(s)	49, 711
FspBI	CTAG	2 cut(s)	131, 212
GluI	GCNGC	2 cut(s)	49, 711
HaeIII	GGCC	2 cut(s)	170, 675
HapII	CCGG	4 cut(s)	120, 271, 558, 583
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	912
HinfI	GANTC	2 cut(s)	274, 547
HpaII	CCGG	4 cut(s)	120, 271, 558, 583
HphI	GGTGA	2 cut(s)	550, 614
Hpy166II	GTNNAC	3 cut(s)	187, 326, 420
Hpy188I	TCNGA	6 cut(s)	45, 281, 427, 432, 629, 703
Hpy188III	TCNNGA	4 cut(s)	18, 157, 578, 768
Hpy8I	GTNNAC	3 cut(s)	187, 326, 420
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	4 cut(s)	89, 699, 842, 852
HpyCH4III	ACNGT	2 cut(s)	163, 285
HpyCH4IV	ACGT	3 cut(s)	140, 199, 225
HpyCH4V	TGCA	1 cut(s)	710
HpyF3I	CTNAG	2 cut(s)	534, 702
HpySE526I	ACGT	3 cut(s)	140, 199, 225
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	912
Kzo9I	GATC	4 cut(s)	427, 460, 685, 722
LmnI	GCTCC	2 cut(s)	45, 127
Lsp1109I	GCAGC	2 cut(s)	35, 722
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	131, 212
MaeII	ACGT	3 cut(s)	140, 199, 225
MaeIII	GTNAC	4 cut(s)	221, 257, 285, 602
MalI	GATC	4 cut(s)	429, 462, 687, 724
MboI	GATC	4 cut(s)	427, 460, 685, 722
MboII	GAAGA	7 cut(s)	19, 374, 445, 458, 605, 837, 895
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	722
MmeI	TCCRAC	2 cut(s)	304, 438
MseI	TTAA	3 cut(s)	357, 390, 651
MspI	CCGG	4 cut(s)	120, 271, 558, 583
MspR9I	CCNGG	1 cut(s)	584
MunI	CAATTG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	351
NciI	CCSGG	1 cut(s)	584
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	4 cut(s)	427, 460, 685, 722
NlaIII	CATG	1 cut(s)	912
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	2 cut(s)	285, 602
PfeI	GAWTC	2 cut(s)	274, 547
PkrI	GCNGC	2 cut(s)	50, 712
Ppu21I	YACGTR	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	3 cut(s)	86, 117, 673
PsuI	RGATCY	1 cut(s)	722
RsaI	GTAC	2 cut(s)	202, 668
RsaNI	GTAC	2 cut(s)	201, 667
SaqAI	TTAA	3 cut(s)	357, 390, 651
SatI	GCNGC	2 cut(s)	49, 711
Sau3AI	GATC	4 cut(s)	427, 460, 685, 722
Sau96I	GGNCC	3 cut(s)	86, 117, 673
ScrFI	CCNGG	1 cut(s)	584
SfaNI	GCATC	1 cut(s)	391
SinI	GGWCC	2 cut(s)	86, 117
SmlI	CTYRAG	1 cut(s)	875
SmoI	CTYRAG	1 cut(s)	875
SsiI	CCGC	1 cut(s)	351
SspMI	CTAG	2 cut(s)	131, 212
StyD4I	CCNGG	1 cut(s)	582
StyI	CCWWGG	1 cut(s)	726
TaaI	ACNGT	2 cut(s)	163, 285
TaiI	ACGT	3 cut(s)	143, 202, 228
TfiI	GAWTC	2 cut(s)	274, 547
Tru1I	TTAA	3 cut(s)	357, 390, 651
Tru9I	TTAA	3 cut(s)	357, 390, 651
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	2 cut(s)	285, 602
TseI	GCWGC	2 cut(s)	48, 710
Tsp45I	GTSAC	2 cut(s)	285, 602
TspDTI	ATGAA	4 cut(s)	41, 108, 519, 681
TspGWI	ACGGA	3 cut(s)	45, 245, 621
TspRI	CASTG	1 cut(s)	559
VpaK11BI	GGWCC	2 cut(s)	86, 117
XapI	RAATTY	2 cut(s)	678, 802
XspI	CTAG	2 cut(s)	131, 212
ZraI	GACGTC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.