Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002210

Physical Location & Seq

Genomic Coordinates Reverse (-)

22762740 .. 22763541

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028434

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTCCCCACTCCACCGATTAACACCAGCAGCAATTTCTTTCCTCCTCCTCCTTTGGACCTCCACCACCAGTACCAGACATAGAAGGACAATGAGGAAGAAGCAGTCAAGAACAATGAACGGAAAAAGAAATCGGAGCTGCCCAAAGTCAATTCAACATAATGCCCAAGAAATCGGACTGGATGAAGGTGGAGGAGAGAGGGATGGGTCCGGTGGGGAGCTGGTGAGGTCATCTGTTAAGTTGGTCAAGACTGTGGAGACCAAAGTTTCGAACTGGACAGTGATGAGTGAGTGTTGGAAAGGGGAGTCTGGTTTAGGTGATGAGAGGAGAATGGTGATCATTGGTTCGAAGACGAATTCAGATGCGAATGTAGGGGATGAGGAGAATGACAATTGTTGTGATGAAAACAAGACCAACAGTGGTGGGAACGACGGGGTTGAGGAGAATGGGAAGTCATTGGATGAAATTGGGGGAGAGATAGATGAGGAAACTGAGGTGTTTGAGGTTCCCATTGCTGGTACGAGTGAAAATGGTCAAGACCGGGTGGGAGAAGAGTTGGATGGCAGAGTATGTGAGTTCTGTATTGGAGATTTTGTGTGGGGTAAGATTAAGAACAACCGGTGGTGGTCGGGCCGGATTTGTGATCCTTCAGATGCTTCTGAGCTTGCAGCGAAATTGAGATTGACAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

231

Amino Acids

25.34

Weight (kDa)

5.12

Isoelectric Point (pI)

51.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27860 AT3G27860 AT5G40340 AT5G40340
fragaria_vesca	FvH4_6g50890 FvH4_6g50890
malus_domestica	MD09G1031100.v1.1
prunus_persica	Prupe.3G286500_v2.0.a1
pyrus_communis	pycom111g02480 pycom17g03040
rosa_chinensis	RchiOBHm_Chr2g0172271
rosa_laevigata	RLG00000006622 RLG00000018603 RLG00000022100 RLG00000024336 RLG00000028434 RLG00000037070
rosa_multiflora	Rmu_sc0005277.1_g000016 Rmu_sc0017785.1_g000001 Rmu_sc0017786.1_g000001 Rmu_ssc0000103.1_g000005
rosa_roxburghii	Rroxscaffold_4G00328330 Rroxscaffold_5G00367520
rosa_rugosa	Rorug02G0558300
rosa_samantha	Rh2AG320200 Rh2AG320300 Rh2AG475500 Rh2AG535600 Rh2AG535700 Rh2AG633300 Rh2BG646900 Rh2CG519400 Rh2CG613900 Rh2DG573700 Rh2DG573800 Rh2DG661800 Rh4BG393600 Rh4CG408400 Rh5AG278200 Rh5BG282800 Rh6AG204800 Rh6AG204900
rosa_wichuraiana	Rw2G052440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	638
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	2 cut(s)	73, 520
AfiI	CCNNNNNNNGG	1 cut(s)	515
AgeI	ACCGGT	1 cut(s)	618
AgsI	TTSAA	1 cut(s)	155
AluBI	AGCT	3 cut(s)	138, 220, 664
AluI	AGCT	3 cut(s)	138, 220, 664
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	638
AoxI	GGCC	1 cut(s)	631
ApeKI	GCWGC	3 cut(s)	29, 138, 668
ApoI	RAATTY	1 cut(s)	355
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AsiGI	ACCGGT	1 cut(s)	618
AspS9I	GGNCC	3 cut(s)	57, 207, 631
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	3 cut(s)	235, 329, 346
AsuII	TTCGAA	2 cut(s)	269, 347
AvaII	GGWCC	2 cut(s)	57, 207
BbsI	GAAGAC	1 cut(s)	356
BbvI	GCAGC	3 cut(s)	41, 125, 680
BccI	CCATC	2 cut(s)	197, 554
BclI	TGATCA	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	1 cut(s)	251
BisI	GCNGC	3 cut(s)	30, 139, 669
BlsI	GCNGC	3 cut(s)	31, 140, 670
Bme1390I	CCNGG	1 cut(s)	542
Bme18I	GGWCC	2 cut(s)	57, 207
BmgT120I	GGNCC	3 cut(s)	57, 207, 631
BmiI	GGNNCC	2 cut(s)	208, 507
BmrFI	CCNGG	1 cut(s)	542
BmsI	GCATC	2 cut(s)	352, 643
BpiI	GAAGAC	1 cut(s)	356
Bpu14I	TTCGAA	2 cut(s)	269, 347
BpuMI	CCSGG	1 cut(s)	542
BsaI	GGTCTC	1 cut(s)	251
BsaWI	WCCGGW	2 cut(s)	209, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse118I	RCCGGY	1 cut(s)	618
Bse1I	ACTGG	3 cut(s)	69, 183, 278
Bse3DI	GCAATG	1 cut(s)	510
BseGI	GGATG	5 cut(s)	187, 208, 382, 466, 565
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	2 cut(s)	483, 651
BseNI	ACTGG	3 cut(s)	69, 183, 278
BseRI	GAGGAG	6 cut(s)	35, 38, 207, 340, 395, 455
BseXI	GCAGC	3 cut(s)	41, 125, 680
BshFI	GGCC	1 cut(s)	633
BshTI	ACCGGT	1 cut(s)	618
BsiSI	CCGG	4 cut(s)	210, 541, 619, 634
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	633
Bso31I	GGTCTC	1 cut(s)	251
Bsp119I	TTCGAA	2 cut(s)	269, 347
Bsp143I	GATC	2 cut(s)	336, 643
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	2 cut(s)	484, 652
BspLI	GGNNCC	2 cut(s)	208, 507
BspPI	GGATC	1 cut(s)	638
BspT104I	TTCGAA	2 cut(s)	269, 347
BspTNI	GGTCTC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	618
BsrI	ACTGG	3 cut(s)	69, 183, 278
BssAI	RCCGGY	1 cut(s)	618
BssMI	GATC	2 cut(s)	336, 643
Bst4CI	ACNGT	3 cut(s)	253, 280, 419
Bst6I	CTCTTC	1 cut(s)	546
BstBI	TTCGAA	2 cut(s)	269, 347
BstC8I	GCNNGC	1 cut(s)	666
BstDEI	CTNAG	2 cut(s)	492, 660
BstF5I	GGATG	5 cut(s)	187, 208, 382, 466, 565
BstKTI	GATC	2 cut(s)	339, 646
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	2 cut(s)	336, 643
BstSCI	CCNGG	1 cut(s)	540
BstV1I	GCAGC	3 cut(s)	41, 125, 680
BstV2I	GAAGAC	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	633
BtsCI	GGATG	5 cut(s)	187, 208, 382, 466, 565
BtsIMutI	CAGTG	2 cut(s)	285, 424
Cac8I	GCNNGC	1 cut(s)	666
Cfr10I	RCCGGY	1 cut(s)	618
Cfr13I	GGNCC	3 cut(s)	57, 207, 631
Csp6I	GTAC	2 cut(s)	72, 519
CspAI	ACCGGT	1 cut(s)	618
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
CviJI	RGCY	4 cut(s)	138, 220, 633, 664
CviKI_1	RGCY	4 cut(s)	138, 220, 633, 664
CviQI	GTAC	2 cut(s)	72, 519
DdeI	CTNAG	2 cut(s)	492, 660
DpnI	GATC	2 cut(s)	338, 645
DpnII	GATC	2 cut(s)	336, 643
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	2 cut(s)	57, 207
Eco57I	CTGAAG	1 cut(s)	633
EcoRI	GAATTC	1 cut(s)	355
FaiI	YATR	3 cut(s)	81, 159, 571
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	3 cut(s)	30, 139, 669
FokI	GGATG	5 cut(s)	194, 215, 389, 473, 572
Fsp4HI	GCNGC	3 cut(s)	30, 139, 669
GluI	GCNGC	3 cut(s)	30, 139, 669
HaeIII	GGCC	1 cut(s)	633
HapII	CCGG	4 cut(s)	210, 541, 619, 634
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	4 cut(s)	210, 541, 619, 634
HphI	GGTGA	3 cut(s)	235, 329, 346
Hpy188I	TCNGA	5 cut(s)	135, 176, 361, 652, 661
Hpy188III	TCNNGA	3 cut(s)	108, 247, 536
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	3 cut(s)	78, 179, 657
HpyCH4III	ACNGT	3 cut(s)	253, 280, 419
HpyCH4V	TGCA	1 cut(s)	668
HpyF3I	CTNAG	2 cut(s)	492, 660
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	2 cut(s)	336, 643
LmnI	GCTCC	2 cut(s)	135, 217
Lsp1109I	GCAGC	3 cut(s)	41, 125, 680
LweI	GCATC	2 cut(s)	352, 643
MalI	GATC	2 cut(s)	338, 645
MboI	GATC	2 cut(s)	336, 643
MboII	GAAGA	3 cut(s)	109, 361, 563
MfeI	CAATTG	1 cut(s)	391
MluCI	AATT	7 cut(s)	33, 150, 355, 391, 465, 674, 687
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	275, 537
MseI	TTAA	3 cut(s)	20, 237, 609
MspI	CCGG	4 cut(s)	210, 541, 619, 634
MspR9I	CCNGG	1 cut(s)	542
MunI	CAATTG	1 cut(s)	391
NciI	CCSGG	1 cut(s)	542
NdeII	GATC	2 cut(s)	336, 643
NlaIV	GGNNCC	2 cut(s)	208, 507
NspV	TTCGAA	2 cut(s)	269, 347
PinAI	ACCGGT	1 cut(s)	618
PkrI	GCNGC	3 cut(s)	31, 140, 670
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	208, 507
PspPI	GGNCC	3 cut(s)	57, 207, 631
RsaI	GTAC	2 cut(s)	73, 520
RsaNI	GTAC	2 cut(s)	72, 519
SaqAI	TTAA	3 cut(s)	20, 237, 609
SatI	GCNGC	3 cut(s)	30, 139, 669
Sau3AI	GATC	2 cut(s)	336, 643
Sau96I	GGNCC	3 cut(s)	57, 207, 631
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	542
SetI	ASST	9 cut(s)	62, 140, 190, 222, 230, 319, 498, 507, 666
SfaNI	GCATC	2 cut(s)	352, 643
SfuI	TTCGAA	2 cut(s)	269, 347
SinI	GGWCC	2 cut(s)	57, 207
Sse9I	AATT	7 cut(s)	33, 150, 355, 391, 465, 674, 687
StyD4I	CCNGG	1 cut(s)	540
TaaI	ACNGT	3 cut(s)	253, 280, 419
TaqI	TCGA	2 cut(s)	269, 347
TasI	AATT	7 cut(s)	33, 150, 355, 391, 465, 674, 687
Tru1I	TTAA	3 cut(s)	20, 237, 609
Tru9I	TTAA	3 cut(s)	20, 237, 609
TscAI	CASTG	2 cut(s)	285, 424
TseI	GCWGC	3 cut(s)	29, 138, 668
TspDTI	ATGAA	4 cut(s)	131, 198, 417, 477
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	285, 424
VpaK11BI	GGWCC	2 cut(s)	57, 207
XapI	RAATTY	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.