Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002210

Physical Location & Seq

Genomic Coordinates Reverse (-)

32396037 .. 32397031

Gene Structure 995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018603

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAGGAAGAAGCAGTCAAGAACAATGAACGGAAAAAGAAATCGGAGCTGCCCAAAGTCAATTCAACACAATGCCCAAGAAATCAAACCAGATGAAGGTGGAGGAGAGTGGGATGGGTCCGGTAGGGAGCTGGTAAGGACGTCTGTTGAGTTAGTCAAGACTGTGGAGGCCAAAGTTTCAATTGTTTACACAATCGTATGTACTCGATCTCTAGCCCGAAGTTACGTCGCCGGCCACAATTCGAAGTCAGCCATCCGTTACCCAATTTGCCGGAATCTCCGACCGTCACAAGCACCTCAAATGGCATTTAGAGGGCGTGGATGTGGACGAGGTGGTTTTGGAAGCTATCGCGAAATAAGCAAGAGATCCACTGGGATCGGATTAAGAAGATATTCAAACTGGACAGTGATGAGTGGGAAATCATTGGATGAAATTGGGGGAGAGATAGATGGGGAAACTAAGGTGATTGAGATTCCCACTGTCGGTATGAGTGAAAATGGTCAAGACCGGGTGGGAGAAGAGTTGGGTGACGGAGTATATGCTTCTGAGCTTGCAGCAAAATTGAGATCCAAGGACAAACTTATCATAACATACTTTGGGGATGTCAATTCAAGAAAACTAATTTGGGTGTGGTTTGAGATTGAGAATTTGAGGCTTTCCAGTCCATCCTATCTCCTTCTTACACCTTCTTCTCCACCCCAAACCCAATCATCAAGGCTTGAGAGAATGGTTATTTCTGGGTTTTTCTTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

252

Amino Acids

27.98

Weight (kDa)

9.76

Isoelectric Point (pI)

57.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27860 AT3G27860 AT5G40340 AT5G40340
fragaria_vesca	FvH4_6g50890 FvH4_6g50890
malus_domestica	MD09G1031100.v1.1
prunus_persica	Prupe.3G286500_v2.0.a1
pyrus_communis	pycom111g02480 pycom17g03040
rosa_chinensis	RchiOBHm_Chr2g0172271
rosa_laevigata	RLG00000006622 RLG00000018603 RLG00000022100 RLG00000024336 RLG00000028434 RLG00000037070
rosa_multiflora	Rmu_sc0005277.1_g000016 Rmu_sc0017785.1_g000001 Rmu_sc0017786.1_g000001 Rmu_ssc0000103.1_g000005
rosa_roxburghii	Rroxscaffold_4G00328330 Rroxscaffold_5G00367520
rosa_rugosa	Rorug02G0558300
rosa_samantha	Rh2AG320200 Rh2AG320300 Rh2AG475500 Rh2AG535600 Rh2AG535700 Rh2AG633300 Rh2BG646900 Rh2CG519400 Rh2CG613900 Rh2DG573700 Rh2DG573800 Rh2DG661800 Rh4BG393600 Rh4CG408400 Rh5AG278200 Rh5BG282800 Rh6AG204800 Rh6AG204900
rosa_wichuraiana	Rw2G052440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	143
AccII	CGCG	1 cut(s)	351
AclWI	GGATC	3 cut(s)	360, 383, 561
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	646
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	2 cut(s)	95, 482
AgsI	TTSAA	4 cut(s)	65, 180, 396, 612
AjuI	GAANNNNNNNTTGG	2 cut(s)	607, 639
AluBI	AGCT	4 cut(s)	48, 130, 345, 550
AluI	AGCT	4 cut(s)	48, 130, 345, 550
AlwI	GGATC	3 cut(s)	360, 383, 561
AoxI	GGCC	2 cut(s)	168, 232
ApeKI	GCWGC	2 cut(s)	48, 554
ApoI	RAATTY	1 cut(s)	646
Asp700I	GAANNNNTTC	1 cut(s)	391
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	475, 539
AsuII	TTCGAA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	35, 566
BccI	CCATC	4 cut(s)	107, 260, 443, 673
BcnI	CCSGG	1 cut(s)	509
BfaI	CTAG	1 cut(s)	212
BisI	GCNGC	2 cut(s)	49, 555
BlsI	GCNGC	2 cut(s)	50, 556
Bme1390I	CCNGG	1 cut(s)	509
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	509
BmrI	ACTGGG	1 cut(s)	381
BmuI	ACTGGG	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	740
BpuMI	CCSGG	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	570
BsaWI	WCCGGW	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 482
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	3 cut(s)	376, 404, 660
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	6 cut(s)	118, 252, 326, 433, 607, 665
BseLI	CCNNNNNNNGG	2 cut(s)	95, 482
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	3 cut(s)	376, 404, 660
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	35, 566
Bsh1236I	CGCG	1 cut(s)	351
Bsh1285I	CGRYCG	1 cut(s)	284
BshFI	GGCC	2 cut(s)	170, 234
BsiEI	CGRYCG	1 cut(s)	284
BsiSI	CCGG	4 cut(s)	120, 231, 271, 508
BslI	CCNNNNNNNGG	2 cut(s)	95, 482
BsnI	GGCC	2 cut(s)	170, 234
Bsp119I	TTCGAA	1 cut(s)	242
Bsp143I	GATC	4 cut(s)	206, 365, 375, 566
Bsp68I	TCGCGA	1 cut(s)	351
BspANI	GGCC	2 cut(s)	170, 234
BspCNI	CTCAG	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	3 cut(s)	360, 383, 561
BspT104I	TTCGAA	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	3 cut(s)	376, 404, 660
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	4 cut(s)	206, 365, 375, 566
BssNI	GRCGYC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	570
Bst4CI	ACNGT	4 cut(s)	163, 285, 406, 481
Bst6I	CTCTTC	1 cut(s)	513
BstACI	GRCGYC	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	232, 552
BstDEI	CTNAG	2 cut(s)	459, 546
BstF5I	GGATG	6 cut(s)	118, 252, 326, 433, 607, 665
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	4 cut(s)	209, 368, 378, 569
BstMBI	GATC	4 cut(s)	206, 365, 375, 566
BstMCI	CGRYCG	1 cut(s)	284
BstMWI	GCNNNNNNNGC	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	507
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	35, 566
BstX2I	RGATCY	2 cut(s)	365, 566
BstYI	RGATCY	2 cut(s)	365, 566
BsuRI	GGCC	2 cut(s)	170, 234
BtsCI	GGATG	6 cut(s)	118, 252, 326, 433, 607, 665
BtsIMutI	CAGTG	3 cut(s)	369, 411, 477
BtuMI	TCGCGA	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	232, 552
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	1 cut(s)	753
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	2 cut(s)	459, 546
DpnI	GATC	4 cut(s)	208, 367, 377, 568
DpnII	GATC	4 cut(s)	206, 365, 375, 566
EaeI	YGGCCR	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	570
Eco47I	GGWCC	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	1 cut(s)	756
FaiI	YATR	7 cut(s)	199, 488, 538, 540, 587, 592, 754
FatI	CATG	1 cut(s)	752
Fnu4HI	GCNGC	2 cut(s)	49, 555
FokI	GGATG	6 cut(s)	125, 239, 333, 440, 614, 652
Fsp4HI	GCNGC	2 cut(s)	49, 555
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	2 cut(s)	49, 555
HaeIII	GGCC	2 cut(s)	170, 234
HapII	CCGG	4 cut(s)	120, 231, 271, 508
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	756
HinfI	GANTC	2 cut(s)	274, 472
HpaII	CCGG	4 cut(s)	120, 231, 271, 508
HphI	GGTGA	2 cut(s)	475, 539
Hpy166II	GTNNAC	2 cut(s)	187, 326
Hpy188I	TCNGA	4 cut(s)	45, 281, 380, 547
Hpy188III	TCNNGA	5 cut(s)	18, 157, 350, 503, 612
Hpy8I	GTNNAC	2 cut(s)	187, 326
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	89, 686, 696
HpyCH4III	ACNGT	4 cut(s)	163, 285, 406, 481
HpyCH4IV	ACGT	2 cut(s)	140, 225
HpyCH4V	TGCA	1 cut(s)	554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	357
HpyF3I	CTNAG	2 cut(s)	459, 546
HpySE526I	ACGT	2 cut(s)	140, 225
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	756
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	206, 365, 375, 566
LmnI	GCTCC	2 cut(s)	45, 127
Lsp1109I	GCAGC	2 cut(s)	35, 566
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	2 cut(s)	140, 225
MaeIII	GTNAC	4 cut(s)	221, 257, 285, 527
MalI	GATC	4 cut(s)	208, 367, 377, 568
MboI	GATC	4 cut(s)	206, 365, 375, 566
MboII	GAAGA	5 cut(s)	19, 399, 530, 681, 739
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	2 cut(s)	365, 566
MluCI	AATT	9 cut(s)	60, 180, 238, 264, 432, 560, 607, 621, 646
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	6 cut(s)	95, 160, 305, 306, 323, 645
MroNI	GCCGGC	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	391
MseI	TTAA	1 cut(s)	383
MspI	CCGG	4 cut(s)	120, 231, 271, 508
MspR9I	CCNGG	1 cut(s)	509
MunI	CAATTG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	357
NaeI	GCCGGC	1 cut(s)	232
NciI	CCSGG	1 cut(s)	509
NdeII	GATC	4 cut(s)	206, 365, 375, 566
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	1 cut(s)	756
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	2 cut(s)	285, 527
NruI	TCGCGA	1 cut(s)	351
NspV	TTCGAA	1 cut(s)	242
PdiI	GCCGGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	274, 472
PkrI	GCNGC	2 cut(s)	50, 556
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	117
PsuI	RGATCY	2 cut(s)	365, 566
RruI	TCGCGA	1 cut(s)	351
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	2 cut(s)	49, 555
Sau3AI	GATC	4 cut(s)	206, 365, 375, 566
Sau96I	GGNCC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	509
SfuI	TTCGAA	1 cut(s)	242
SinI	GGWCC	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	9 cut(s)	60, 180, 238, 264, 432, 560, 607, 621, 646
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	4 cut(s)	163, 285, 406, 481
TaiI	ACGT	2 cut(s)	143, 228
TaqI	TCGA	2 cut(s)	205, 242
TasI	AATT	9 cut(s)	60, 180, 238, 264, 432, 560, 607, 621, 646
TatI	WGTACW	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	274, 472
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TscAI	CASTG	3 cut(s)	376, 411, 484
TseFI	GTSAC	2 cut(s)	285, 527
TseI	GCWGC	2 cut(s)	48, 554
Tsp45I	GTSAC	2 cut(s)	285, 527
TspDTI	ATGAA	3 cut(s)	41, 108, 444
TspGWI	ACGGA	3 cut(s)	45, 245, 546
TspRI	CASTG	3 cut(s)	376, 411, 484
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	391
XspI	CTAG	1 cut(s)	212
ZraI	GACGTC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.